BAC Information

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BAC

Clone NameB6Ng01-328E19
Chromosome13 (Build37)
Map Location 113,593,121 - 113,695,812
singlet/doubletdoublet
Overlap genePpap2a, LOC100041282, Skiv2l2
Upstream geneMap3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
Downstream geneDhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328E19.bB6Ng01-328E19.g
ACCGA115603GA115604
length1,2071,135
definitionB6Ng01-328E19.b B6Ng01-328E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,694,592 - 113,695,812)(113,593,121 - 113,594,247)
sequence
gaattcagcccccgcccccccccccccaacacacacacacacacacacac
acacacacacacacacagtgtatgtgcatctccctgcacaatatcatgta
accttacttagattacagctttaccttcctttctctcaatacaaacccag
tcagccagcacctgagactcctgaatgcttctcaatgcttctcgatgcta
atgagacatctcggtaccctaaacctttagccaacgacctttgcccatct
tggatgttcctagtccctgttccccaaatgatataagccttgaattacag
aagccaggttacggtgatctgcttccctgcactggtcccgggctgtcact
caccaggcagactcacagggcttctcatcacccctttagtccccttcagt
ctctgcgccctttgccctctgactgatggactggggcagagagggccaca
gctttttatagacttatttttttaatgagtgaggtttagtaccactgatc
cattttaatatttatgtgccattgaattttttctcatagatgaagaaaag
aagatggttgaagaagttttcaataatgcaattgactgcttgtctgatga
agataaaaagctccctcaggtgggttagcaccagtaaggaaggattttag
caggtagcagctgttaactcattgtcattttattgcattgtggcaacata
tgttggcctataggctcagacaacaccttcatatatgtttcaaatcattg
aaaaggtgccaagtaagatttgctgtttgaaggaattttctttaagagca
tacatagcatagtctagaaactactttttatattcctgaataacaaaaat
tttagtgttgattttaagtcactaaatttctcagtttataagaattctga
acaagagagtatacctaatgaaaattaatttattctttagaaaataaaca
cctcctttgctttaatgtcattcatattttcctttcactgttggaattga
ctgggcatcaaatgtactggtacttggtgccactcccaggggttctgacc
atattttgtctatttcatcttagtggaagaatcctttaaaacctcctgca
tatgactttactatgcattctagaggacaatacttttgactagtatttgt
gaagtagatgggcagggtattggaggtcacgctgtgttcaagataagata
cttggtt
gaattcactctgcgggattcagtcttaggacatccattaggatgtggtga
cctgtagcccaggcacttgtggtgcagaggtaggaaaatgtttagttcaa
gaccagcttgggctacctagggagagcccgggtcactaaccaagaacagc
ctttatagaaacatcttttcagatatcggggtagattattttaagttatt
agtttatgaactatttccccgttctctcttttctgccttctttcctttcc
ctttcttccctctctcctttccttctttcttccttctttctagatagggt
cttgctgtgcaacctggtttggaacctgtgtcctcttcttcctcggcctc
agtgctgggaatatcggcacgctctcccgtgcctggctaaagtatggtgt
tgcttttctacggacccaacattgatgaggagcgctgaaaacaatagggc
ctcacagctaatgttaataacatgaagccatatggtagatttatactttc
taattatactttgtaatttctaattaaaattaattaattttgtttcagta
tacccaagcacagtgctcctagtcctcccccccaccccccccccccagat
ccactcctctgtttcccctcagaaaagagcaggcctcccaggtgtatcca
cggaacatgacataatcagagacagtgagattagccacgaaccctcatat
cagggctggagggaagtttgatgtggttgcctggtgccctgtctcatgtt
tgtaatcccatccctcacatggttaaaataggaagattcctgagttagag
gctggtctgggtttgcgcagcgagttcgggtcagcctcaaatttctattg
aacaaataactgacaaagatcatgtacagtgggaaaacacatatgcagtg
cagttttattaattctgtttttcttgccaggtggcctatttttggcaaca
ttgaacacatcctgttgaccttctgagtcatcttatagtatgtaattggc
cttacagtttcaggaatatgctccttcttaggccattgtcaatatctaac
agtttcttcctatacttcttgtgttttgttttgtttttgaaccatggggc
ctcacagctcagccagtcctagaactcacctatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113694592_113695812
seq2: B6Ng01-328E19.b_43_1249 (reverse)

seq1  AACCAAGTACTCATCTGTGGACCACAGCGTGACCTCCACATTCCCCCTTG  50
      ||||||||| || | | | || |||||||||||||||| || |||   ||
seq2  AACCAAGTA-TCTTATCTTGAACACAGCGTGACCTCCA-ATACCC---TG  45

seq1  CCCCAATCTAACTTTCACACACTACCTTAGTCAAAAGTATTGTCCTCTAG  100
      |||  |||||   |||||| | |||  |||||||||||||||||||||||
seq2  CCC--ATCTA--CTTCACA-AATAC--TAGTCAAAAGTATTGTCCTCTAG  88

seq1  -ATGCATAGTAAAATCATATGCA-GAGGTTTTAAAGGATTCTTCCAACTA  148
       |||||||||||| ||||||||| ||||||||||||||||||||| ||||
seq2  AATGCATAGTAAAGTCATATGCAGGAGGTTTTAAAGGATTCTTCC-ACTA  137

seq1  AGATGAAAATTAGAC-AAATATGGTCAGAACCCCTGGGAGTGGCACCAAG  197
      ||||||||  ||||| ||||||||||||||||||||||||||||||||||
seq2  AGATGAAA--TAGACAAAATATGGTCAGAACCCCTGGGAGTGGCACCAAG  185

seq1  TACCAGTACATTTTGATGCCCAGTCAATTCCAACAGTGAAAGGAAAAATA  247
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  TACCAGTACA-TTTGATGCCCAGTCAATTCCAACAGTGAAAGG-AAAATA  233

seq1  TGAATGACATTAAAGCAAAGGAGGTGTTTATTTTCTAAAGAATAAATTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACATTAAAGCAAAGGAGGTGTTTATTTTCTAAAGAATAAATTAA  283

seq1  TTTTCATTAGGTATACTCTCTTGTTCAGAATTCTTATAAACTGAGAAATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTAGGTATACTCTCTTGTTCAGAATTCTTATAAACTGAGAAATT  333

seq1  TAGTGACTTAAAATCAACACTAAAATTTTTGTTATTCAGGAATATAAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTTAAAATCAACACTAAAATTTTTGTTATTCAGGAATATAAAAA  383

seq1  GTAGTTTCTAGACTATGCTATGTATGCTCTTAAAGAAAATTCCTTCAAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTCTAGACTATGCTATGTATGCTCTTAAAGAAAATTCCTTCAAAC  433

seq1  AGCAAATCTTACTTGGCACCTTTTCAATGATTTGAAACATATATGAAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCTTACTTGGCACCTTTTCAATGATTTGAAACATATATGAAGGT  483

seq1  GTTGTCTGAGCCTATAGGCCAACATATGTTGCCACAATGCAATAAAATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGAGCCTATAGGCCAACATATGTTGCCACAATGCAATAAAATGA  533

seq1  CAATGAGTTAACAGCTGCTACCTGCTAAAATCCTTCCTTACTGGTGCTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGTTAACAGCTGCTACCTGCTAAAATCCTTCCTTACTGGTGCTAA  583

seq1  CCCACCTGAGGGAGCTTTTTATCTTCATCAGACAAGCAGTCAATTGCATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGAGGGAGCTTTTTATCTTCATCAGACAAGCAGTCAATTGCATT  633

seq1  ATTGAAAACTTCTTCAACCATCTTCTTTTCTTCATCTATGAGAAAAAATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAACTTCTTCAACCATCTTCTTTTCTTCATCTATGAGAAAAAATT  683

seq1  CAATGGCACATAAATATTAAAATGGATCAGTGGTACTAAACCTCACTCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCACATAAATATTAAAATGGATCAGTGGTACTAAACCTCACTCAT  733

seq1  TAAAAAAATAAGTCTATAAAAAGCTGTGGCCCTCTCTGCCCCAGTCCATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAAGTCTATAAAAAGCTGTGGCCCTCTCTGCCCCAGTCCATC  783

seq1  AGTCAGAGGGCAAAGGGCGCAGAGACTGAAGGGGACTAAAGGGGTGATGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGGCAAAGGGCGCAGAGACTGAAGGGGACTAAAGGGGTGATGA  833

seq1  GAAGCCCTGTGAGTCTGCCTGGTGAGTGACAGCCCGGGACCAGTGCAGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTGTGAGTCTGCCTGGTGAGTGACAGCCCGGGACCAGTGCAGGG  883

seq1  AAGCAGATCACCGTAACCTGGCTTCTGTAATTCAAGGCTTATATCATTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATCACCGTAACCTGGCTTCTGTAATTCAAGGCTTATATCATTTG  933

seq1  GGGAACAGGGACTAGGAACATCCAAGATGGGCAAAGGTCGTTGGCTAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGGGACTAGGAACATCCAAGATGGGCAAAGGTCGTTGGCTAAAG  983

seq1  GTTTAGGGTACCGAGATGTCTCATTAGCATCGAGAAGCATTGAGAAGCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGTACCGAGATGTCTCATTAGCATCGAGAAGCATTGAGAAGCAT  1033

seq1  TCAGGAGTCTCAGGTGCTGGCTGACTGGGTTTGTATTGAGAGAAAGGAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTCTCAGGTGCTGGCTGACTGGGTTTGTATTGAGAGAAAGGAAG  1083

seq1  GTAAAGCTGTAATCTAAGTAAGGTTACATGATATTGTGCAGGGAGATGCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTGTAATCTAAGTAAGGTTACATGATATTGTGCAGGGAGATGCA  1133

seq1  CATACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGG  1183

seq1  GGGGGGGGGGCGGGGGCTGAATTC  1221
      ||||||||||||||||||||||||
seq2  GGGGGGGGGGCGGGGGCTGAATTC  1207

seq1: chr13_113593121_113594247
seq2: B6Ng01-328E19.g_65_1199

seq1  GAATTCACTCTGCGGGATTCAGTCTTAGGACATCCATTAGGATGTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGCGGGATTCAGTCTTAGGACATCCATTAGGATGTGGTGA  50

seq1  CCTGTAGCCCAGGCACTTGTGGTGCAGAGGTAGGAAAATGTTTAGTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCCCAGGCACTTGTGGTGCAGAGGTAGGAAAATGTTTAGTTCAA  100

seq1  GACCAGCTTGGGCTACCTAGGGAGAGCCCGGGTCACTAACCAAGAACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTTGGGCTACCTAGGGAGAGCCCGGGTCACTAACCAAGAACAGC  150

seq1  CTTTATAGAAACATCTTTTCAGATATCGGGGTAGATTATTTTAAGTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGAAACATCTTTTCAGATATCGGGGTAGATTATTTTAAGTTATT  200

seq1  AGTTTATGAACTATTTCCCCGTTCTCTCTTTTCTGCCTTCTTTCCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGAACTATTTCCCCGTTCTCTCTTTTCTGCCTTCTTTCCTTTCC  250

seq1  CTTTCTTCCCTCTCTCCTTTCCTTCTTTCTTCCTTCTTTCTAGATAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCCTCTCTCCTTTCCTTCTTTCTTCCTTCTTTCTAGATAGGGT  300

seq1  CTTGCTGTGCAACCTGGTTTGGAACCTGTGTCCTCTTCTTCCTCGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTGCAACCTGGTTTGGAACCTGTGTCCTCTTCTTCCTCGGCCTC  350

seq1  AGTGCTGGGAATATCGGCACGCTCTCCCGTGCCTGGCTAAAGTATGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGAATATCGGCACGCTCTCCCGTGCCTGGCTAAAGTATGGTGT  400

seq1  TGCTTTTCTACGGACCCAACATTGATGAGGAGCGCTGAAAACAATAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTACGGACCCAACATTGATGAGGAGCGCTGAAAACAATAGGGC  450

seq1  CTCACAGCTAATGTTAATAACATGAAGCCATATGGTAGATTTATACTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCTAATGTTAATAACATGAAGCCATATGGTAGATTTATACTTTC  500

seq1  TAATTATACTTTGTAATTTCTAATTAAAATTAATTAATTTTGTTTCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATACTTTGTAATTTCTAATTAAAATTAATTAATTTTGTTTCAGTA  550

seq1  TACCCAAGCACAGTGCTCCTAGTCCTCCCCCCCACCCCCCCCCCCCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGCACAGTGCTCCTAGTCCTCCCCCCCACCCCCCCCCCCCAGAT  600

seq1  CCACTCCTCTGTTTCCCCTCAGAAAAGAGCAGGCCTCCCAGGTGTATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTCTGTTTCCCCTCAGAAAAGAGCAGGCCTCCCAGGTGTATCCA  650

seq1  CGGAACATGACATAATCAGAGACAGTGAGATTAGCCACGAACCCTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACATGACATAATCAGAGACAGTGAGATTAGCCACGAACCCTCATAT  700

seq1  CAGGGCTGGAGGGAAG-TTGATGTGGTTGCCTGGTGCCCTGTCTCATGTT  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGGGCTGGAGGGAAGTTTGATGTGGTTGCCTGGTGCCCTGTCTCATGTT  750

seq1  TGTAATCCCATCCCTCACATGGTTAAAATAGGAAGATTCCTGAGTTAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCCATCCCTCACATGGTTAAAATAGGAAGATTCCTGAGTTAGAG  800

seq1  GCTGGTCTGGG-TTGCGCAGCGAGTTCGGGTCAGCCTCAAATTTCTATTG  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTGGGTTTGCGCAGCGAGTTCGGGTCAGCCTCAAATTTCTATTG  850

seq1  AACAAATAAACTGACAAAGATCATGTACAGTGGGAAAACACATATGCAGT  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAT-AACTGACAAAGATCATGTACAGTGGGAAAACACATATGCAGT  899

seq1  GCAGTTTTATTAATTCTGTTTT--CTGCCAGGTGGCCTATATTT-GCAAC  945
      ||||||||||||||||||||||   ||||||||||||||| ||| |||||
seq2  GCAGTTTTATTAATTCTGTTTTTCTTGCCAGGTGGCCTATTTTTGGCAAC  949

seq1  AT--GACACATCCTGTTGACC-TCTGAGTCATCTTATAGTAATGTAATTG  992
      ||   |||||||||||||||| |||||||||||||||||| |||||||||
seq2  ATTGAACACATCCTGTTGACCTTCTGAGTCATCTTATAGT-ATGTAATTG  998

seq1  GCCTTACAGTTTCAGGAATATGCTC--TCCTAAGCCATTGTCAATATCT-  1039
      |||||||||||||||||||||||||  || || |||||||||||||||| 
seq2  GCCTTACAGTTTCAGGAATATGCTCCTTCTTAGGCCATTGTCAATATCTA  1048

seq1  ACAGTTTCTTCCCATACTTCTTGTTGTTTTGTTTTGTTTTTTGAAACATG  1089
      |||||||||||| |||||||||| |||||||||||| |||||||| ||||
seq2  ACAGTTTCTTCCTATACTTCTTG-TGTTTTGTTTTG-TTTTTGAACCATG  1096

seq1  GGGCCTCACAGCTCAGCCAGGCCTAGAACTCA-CTATGT  1127
      |||||||||||||||||||| ||||||||||| ||||||
seq2  GGGCCTCACAGCTCAGCCAGTCCTAGAACTCACCTATGT  1135