BAC Information

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BAC

Clone NameB6Ng01-328J11
Chromosome13 (Build37)
Map Location 55,340,969 - 55,342,041
singlet/doubletsinglet
Overlap geneNsd1
Upstream geneLOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4
Downstream geneRab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328J11.bB6Ng01-328J11.g
ACCGA115813GA115814
length5711,073
definitionB6Ng01-328J11.b B6Ng01-328J11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caaaggtcatgcaatcacagaaactatccatggctggcaaaaccatgcct
ctgctggagcatgaggcaaatcacagtcagctgctgcagacagtccaaag
ctcacatccatattgccagccacacctagggattcttacaatctctctct
ttctctctctctctctctctctctctctctctctctctctctctctctct
ctctctctctcggtccatgtgtgtttgtgttgtattcgcacccgcattcc
cgtgttcgtgaactcaaaatacacaaacctgccaccacctcccgagctct
gtgatgacaagtgagcaaaaacagctatctctgtgtcttgatattcagta
gattcctgggacaaacagatcttgatatctgtgtcacagatgcacacaca
cccctctggacctatgtgtgaagtaccacacaccagatgtggtggatgct
ctggatgtgctccgactctccgttcctgtatagtgagatccgtgacagct
acttatcactctcactcatactctctatgacaatctctcaggatcgtgac
tgcctctccacacctctcttc
gaattccagccgggcatggtggtgcacgcctttaatcccagcactcagga
agcagaggcaggctgatttctgaattcaaggtcagcctcgtctacagagt
gagttccaagacagccagggctacacacagaaaccctgtctgggaaaaaa
caaaaaacaaaaaacaaaaaaaacaagtgttgaattcccagcaccataaa
aattaaggtgatgatgtatttttgtaaaccgagcactctgggggtggagg
taggaggaccaggagttcaaggtcatccacattacaaaaacaacaaataa
agccacctttcgtttgggattaatggcagagtctattaatctcagcactc
caagacagaggcaagtagatctctgagctcaaaagccaacttggtctaca
tattgacttagcaaccttagccacagagaccctacctcaaaaacaaacaa
aagaaaaaaattaacaagcaacaaatgttcataaacctaaacaaatgact
cgtaacatgctatgtttcataaacctaaacaaatgtgtggtgctacccgc
ctatattctcagcattcctcaagactatgggcagagagctgtcgagtttg
aggtctgccttttcaacaggagaccctgactaaaacaaaggaagcaaaac
ccactcactcagagagaaatgttcatgattaaaatataacctaggtatga
aactacaaaactaaaaactggcagaaagcaaaaggaataaaactactaaa
acatcttattaaagtcggatgttacagagacatttctataactcaagtac
tggcaagtatgagagagggaagcctgagttcaagagcagtctaaaatgca
gaacaagaccctggctaaaagcaaacaaacaagccaacaaggtaagtaca
atattcttttttattctttttattttcctgtcaatcttaggataaacaag
gagaatttgggaggcagagcaggcgatttctgagttcaaagccagcctgg
tctacagagtgagtcaggcaagcaggctacacagaagaaccctgtctcga
aatcaaaactaaaaaaaaaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55340969_55342041
seq2: B6Ng01-328J11.g_67_1139 (reverse)

seq1  GGTTTTTTGGTT---------TTTCGAGACAGGGTTTCTCTGTGTAGCCC  41
      ||||||||  ||         |||||||||||||||  ||||||||||| 
seq2  GGTTTTTTTTTTTAGTTTTGATTTCGAGACAGGGTTCTTCTGTGTAGCC-  49

seq1  TGGCTGGCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAA  91
        ||| |||||  |||||||||||||||||||||||| ||||||||||||
seq2  -TGCTTGCCTG--ACTCACTCTGTAGACCAGGCTGGCTTTGAACTCAGAA  96

seq1  ATTCGCCTGCCTCTGCCTCCCAAA-TCT-CTTGTTTTAATCCCTAAGATT  139
      | ||||||| |||||||||||||| ||| |||||||  || |||||||||
seq2  A-TCGCCTG-CTCTGCCTCCCAAATTCTCCTTGTTT--AT-CCTAAGATT  141

seq1  GAACAGGAAAATAAAAAGAATAAAAAAGAAATATTGTACTTACCTTGTTG  189
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  G-ACAGGAAAATAAAAAGAATAAAAAAG-AATATTGTACTTACCTTGTTG  189

seq1  GCTTGTTTGTTTGCTTTTAGCCAGGGTCTTGTTCTGCATTTTAGACTGCT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTGTTTGCTTTTAGCCAGGGTCTTGTTCTGCATTTTAGACTGCT  239

seq1  CTTGAACTCAGGCTTCCCTCTCTCATACTTGCCAGTACTTGAGTTATAGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAGGCTTCCCTCTCTCATACTTGCCAGTACTTGAGTTATAGA  289

seq1  AATGTCTCTGTAACATCCGACTTTAATAAGATGTTTTAGTAGTTTTATTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCTGTAACATCCGACTTTAATAAGATGTTTTAGTAGTTTTATTC  339

seq1  CTTTTGCTTTCTGCCAGTTTTTAGTTTTGTAGTTTCATACCTAGGTTATA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTTCTGCCAGTTTTTAGTTTTGTAGTTTCATACCTAGGTTATA  389

seq1  TTTTAATCATGAACATTTCTCTCTGAGTGAGTGGGTTTTGCTTCCTTTGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCATGAACATTTCTCTCTGAGTGAGTGGGTTTTGCTTCCTTTGT  439

seq1  TTTAGTCAGGGTCTCCTGTTGAAAAGGCAGACCTCAAACTCGACAGCTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCAGGGTCTCCTGTTGAAAAGGCAGACCTCAAACTCGACAGCTCT  489

seq1  CTGCCCATAGTCTTGAGGAATGCTGAGAATATAGGCGGGTAGCACCACAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATAGTCTTGAGGAATGCTGAGAATATAGGCGGGTAGCACCACAC  539

seq1  ATTTGTTTAGGTTTATGAAACATAGCATGTTACGAGTCATTTGTTTAGGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTAGGTTTATGAAACATAGCATGTTACGAGTCATTTGTTTAGGT  589

seq1  TTATGAACATTTGTTGCTTGTTAATTTTTTTCTTTTGTTTGTTTTTGAGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACATTTGTTGCTTGTTAATTTTTTTCTTTTGTTTGTTTTTGAGG  639

seq1  TAGGGTCTCTGTGGCTAAGGTTGCTAAGTCAATATGTAGACCAAGTTGGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCTCTGTGGCTAAGGTTGCTAAGTCAATATGTAGACCAAGTTGGC  689

seq1  TTTTGAGCTCAGAGATCTACTTGCCTCTGTCTTGGAGTGCTGAGATTAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGCTCAGAGATCTACTTGCCTCTGTCTTGGAGTGCTGAGATTAAT  739

seq1  AGACTCTGCCATTAATCCCAAACGAAAGGTGGCTTTATTTGTTGTTTTTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGCCATTAATCCCAAACGAAAGGTGGCTTTATTTGTTGTTTTTG  789

seq1  TAATGTGGATGACCTTGAACTCCTGGTCCTCCTACCTCCACCCCCAGAGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGGATGACCTTGAACTCCTGGTCCTCCTACCTCCACCCCCAGAGT  839

seq1  GCTCGGTTTACAAAAATACATCATCACCTTAATTTTTATGGTGCTGGGAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTTTACAAAAATACATCATCACCTTAATTTTTATGGTGCTGGGAA  889

seq1  TTCAACACTTGTTTTTTTTGTTTTTTGTTTTTTGTTTTTTCCCAGACAGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACTTGTTTTTTTTGTTTTTTGTTTTTTGTTTTTTCCCAGACAGG  939

seq1  GTTTCTGTGTGTAGCCCTGGCTGTCTTGGAACTCACTCTGTAGACGAGGC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTGTGTAGCCCTGGCTGTCTTGGAACTCACTCTGTAGACGAGGC  989

seq1  TGACCTTGAATTCAGAAATCAGCCTGCCTCTGCTTCCTGAGTGCTGGGAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGAATTCAGAAATCAGCCTGCCTCTGCTTCCTGAGTGCTGGGAT  1039

seq1  TAAAGGCGTGCACCACCATGCCCGGCTGGAATTC  1073
      ||||||||||||||||||||||||||||||||||
seq2  TAAAGGCGTGCACCACCATGCCCGGCTGGAATTC  1073