BAC Information

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BAC

Clone NameB6Ng01-328L09
Chromosome13 (Build37)
Map Location 118,731,755 - 118,878,001
singlet/doubletdoublet
Overlap geneHcn1, LOC100041695, LOC674926
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328L09.bB6Ng01-328L09.g
ACCGA115895GA115896
length1,2241,098
definitionB6Ng01-328L09.b B6Ng01-328L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,731,755 - 118,732,988)(118,876,892 - 118,878,001)
sequence
gaattcaatattagtaactcatcagtaacatctgacattaatataatcat
accagacatcagtgagaaagtcaaatactaaaagagatcagaaactttac
ctaaaaataaagtgttttttgaaatcttgaattttctttgtaatgcaata
attcaaattttgtatacatagttacttattctcctatttgtagttatatt
aatctaaattatttatattaatttatattatattttatattacttgtcat
gggatttaaggcatttattactggaaaccatccccatgttttctgcctca
acacaggagtgaaatattgatatagttcatcttgattgttgagggccaaa
aggttgacagagatagtaaaatgattgtatttctgaattctatcatgtca
tatattaaagaaagaagataactgggtgaagctattatcagtctcattag
catttcccatcatgatatgacacaaaataattctctattttgtattgtaa
atatgtccaattttctttgtttgaatagaaagggaatgatgtagggaaat
agtaagtttcctattgtaagattctcagacttactgttcatctctcctct
cctcctctctccctgtcctgaccctcctcttatccatcctcttccccctc
tacctctctcttctccatctctccctccttcttctctccttccttcttct
ctccctcctcctcctctacctcctcctcttcctcctcttcctcctcctcc
tcctcctctttttcttctcctccattcctgtcttacctttattaacttaa
ggataccatgattagctccaaatttcctagggtatcaccttgattagacc
tttagtaatggtcccaaggtagcatacaatactaagtctagaaaacatta
tcagactgcaaatagttgagggccttctagtctgtgatactttctcactg
ttacatctacatttactgtagacatgtggtacagtagagcgagcgaccac
agaaggaataatatgaaaagcatcagtcgtttattctttcttatccctgc
ctcattctctgaagtactcctgtttatgttaggcttctatgatgtcccta
ttgttcaggctatgctagagatgagctgaccgatgaacatatatttataa
aatggattcagatttactctggtagttcaacttggctgctgaacctgaag
aaggtcaagctgctatttccatga

gaattcttgtgaagcataaatggcctaatgaaaggaaagtgtctgccaca
gggccagacacatgataaatgttaaattgatgcaataattaatatcttta
tgattgttttcatgcttttaaagtctgtaaaagatagagtccataccagt
tgggggcttgtactccaggaagactaatgacaaaccaatcatgttgatga
atagagtgctgagtcctgctttggcagatgcatgtggacggggacattac
ttagtggtttttcttagaacagaaggcttggtaagaaagcaaaacaaagt
ttgtcccctacattcaggggacaaagagcaaatcaaagaaaaagactgaa
aataatttcgagaaataaaaataagcattactgggtggcatttagaaggg
aaatgtattttgaggactatcctgagaaagctgttagaaattggaatgtc
tcattgaaagactcaccctggttgggcttggtcgtactcatgtacaatcc
tagcacttggaaggcagaggtaggacatttacaagtttgatgcaagtttg
agctaaatactacttctaacactgttattactactactactactaggccc
caaataagagcaccaatatgaaaaggtagtagttttgaaattggtttatt
gaaaacaatattttgcaatttaatttttcttacattttactaattatcct
ctatggagaaaatattttgttcaaatgaaactggatgaacggactaagaa
ataactgttgtaaaagttcctattgacactaaagacattctaaatgagcc
caaaactaaggagcatctcacaactcagtctggacatggtctggggcttt
taatggcactttgcaaaatgaagcatagcgctttttcttgcactgggctt
cctgccaggcagcacatagtattatttctatctggacataaatcaagaaa
ggtgctccctgagctaagaagtaatgagatgctaccaggtacttggggtc
cttgaagttggctctctaagtgatctctcatgatttagactatatcagta
tcatcctgtgagacgaactatgcgtctttaggctatcaaagactaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118731755_118732988
seq2: B6Ng01-328L09.b_49_1272

seq1  GAATTCAATATTAGTAACTCATCAGTAACATCTGACATTAATATAATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTAGTAACTCATCAGTAACATCTGACATTAATATAATCAT  50

seq1  ACCAGACATCAGTGAGAAAGTCAAATACTAAAAGAGATCAGAAACTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACATCAGTGAGAAAGTCAAATACTAAAAGAGATCAGAAACTTTAC  100

seq1  CTAAAAATAAAGTGTTTTTTGAAATCTTGAATTTTCTTTGTAATGCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATAAAGTGTTTTTTGAAATCTTGAATTTTCTTTGTAATGCAATA  150

seq1  ATTCAAATTTTGTATACATAGTTACTTATTCTCCTATTTGTAGTTATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATTTTGTATACATAGTTACTTATTCTCCTATTTGTAGTTATATT  200

seq1  AATCTAAATTATTTATATTAATTTATATTATATTTTATATTACTTGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATTATTTATATTAATTTATATTATATTTTATATTACTTGTCAT  250

seq1  GGGATTTAAGGCATTTATTACTGGAAACCATCCCCATGTTTTCTGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTAAGGCATTTATTACTGGAAACCATCCCCATGTTTTCTGCCTCA  300

seq1  ACACAGGAGTGAAATATTGATATAGTTCATCTTGATTGTTGAGGGCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAGTGAAATATTGATATAGTTCATCTTGATTGTTGAGGGCCAAA  350

seq1  AGGTTGACAGAGATAGTAAAATGATTGTATTTCTGAATTCTATCATGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGACAGAGATAGTAAAATGATTGTATTTCTGAATTCTATCATGTCA  400

seq1  TATATTAAAGAAAGAAGATAACTGGGTGAAGCTATTATCAGTCTCATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAAGAAAGAAGATAACTGGGTGAAGCTATTATCAGTCTCATTAG  450

seq1  CATTTCCCATCATGATATGACACAAAATAATTCTCTATTTTGTATTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCATCATGATATGACACAAAATAATTCTCTATTTTGTATTGTAA  500

seq1  ATATGTCCAATTTTCTTTGTTTGAATAGAAAGGGAATGATGTAGGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCAATTTTCTTTGTTTGAATAGAAAGGGAATGATGTAGGGAAAT  550

seq1  AGTAAGTTTCCTATTGTAAGATTCTCAGACTTACTGTTCATCTCTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTCCTATTGTAAGATTCTCAGACTTACTGTTCATCTCTCCTCT  600

seq1  CCTCCTCTCTCCCTGTCCTGACCCTCCTCTTATCCATCCTCTTCCCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCTCCCTGTCCTGACCCTCCTCTTATCCATCCTCTTCCCCCTC  650

seq1  TACCTCTCTCTTCTCCATCTCTCCCTCCTTCTTCTCTCCTTCCTTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCTCTTCTCCATCTCTCCCTCCTTCTTCTCTCCTTCCTTCTTCT  700

seq1  CTCCCTCCTCCTCCTCTACCTCCTCCTCTTCCTCCTCTTCCTCCTCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTCCTCCTCTACCTCCTCCTCTTCCTCCTCTTCCTCCTCCTCC  750

seq1  TCCTCCTCTTTTTCTTCTCCTCCATTCCTGTCTTACCTTTATTAACTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTTTTTCTTCTCCTCCATTCCTGTCTTACCTTTATTAACTTAA  800

seq1  GGATACCATGATTAGCTCCAAATTTCCTAGGGTATCACCTTGATTAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCATGATTAGCTCCAAATTTCCTAGGGTATCACCTTGATTAGACC  850

seq1  TTTAGTAATGGTCCCAAGGTAGCATACAATACTAAGTCTAGAAAACATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAATGGTCCCAAGGTAGCATACAATACTAAGTCTAGAAAACATTA  900

seq1  TCAGACTGCAAATAGTTGAGGGCCTTCTAGTCTGTGATACTTTCTCACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTGCAAATAGTTGAGGGCCTTCTAGTCTGTGATACTTTCTCACTG  950

seq1  TTACATCTTACATTTACTGTAGACATGTGGGTACAGTAGAGCGAGCGA-C  999
      ||||||| |||||||||||||||||||| ||||||||||||||||||| |
seq2  TTACATC-TACATTTACTGTAGACATGT-GGTACAGTAGAGCGAGCGACC  998

seq1  ACAGAAGGAATAATATGAAAAGCATCAGTCGTTTATTCTTTCTTATCCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGAATAATATGAAAAGCATCAGTCGTTTATTCTTTCTTATCCCT  1048

seq1  GCCTCATTCTCTGAAGTAACTCTGTTTATGTTTAGGCTTCTAATGAATGT  1099
      ||||||||||||||||||   ||||||||| |||||||||| ||| ||||
seq2  GCCTCATTCTCTGAAGTACTCCTGTTTATG-TTAGGCTTCT-ATG-ATGT  1095

seq1  CCTTATTGTTCAGGCTATGCTAGAGGAATGGAGCTGACAGAATGAACATA  1149
      || ||||||||||||||||||||||  || |||||||| | |||||||||
seq2  CCCTATTGTTCAGGCTATGCTAGAG--AT-GAGCTGACCG-ATGAACATA  1141

seq1  TA-TTATAAAATGGGATTCAGTATTA-TCTGGGTAGTCCAACATTGGCTG  1197
      || ||||||||| ||||||||  ||| ||| |||||| |||| |||||||
seq2  TATTTATAAAAT-GGATTCAGATTTACTCT-GGTAGTTCAAC-TTGGCTG  1188

seq1  TCTGAA-CTGAAGAAAGGTCAAGCTGCTTATTCCATGA  1234
       ||||| |||||| ||||||||||||||  ||||||||
seq2  -CTGAACCTGAAG-AAGGTCAAGCTGCTATTTCCATGA  1224


seq1: chr13_118876892_118878001
seq2: B6Ng01-328L09.g_68_1165 (reverse)

seq1  TTTTAGTCCTTTGAATAGCCTTAAAAGACGCAATAGGTTCGTTCCTCACC  50
      ||||||| ||||| |||||||  |||||||| ||| ||||||  |||| |
seq2  TTTTAGT-CTTTG-ATAGCCT--AAAGACGC-ATA-GTTCGT--CTCA-C  41

seq1  AGGATGATAACTGGATATAGTCTAAACCATGAGAAGGATCACTTAGAGAG  100
      |||||||| ||| ||||||||||||| |||||||  ||||||||||||||
seq2  AGGATGAT-ACT-GATATAGTCTAAATCATGAGA--GATCACTTAGAGAG  87

seq1  CCAACTTCAAGGACCCCAAGTACCTGGTAGCATCTCATTACTTCTTAGCC  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCAACTTCAAGGACCCCAAGTACCTGGTAGCATCTCATTACTTCTTAG-C  136

seq1  TCAGGGAGCACC-TTCTTGATTTATGTCCAGATAGAAAT-ATACTATGTG  198
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  TCAGGGAGCACCTTTCTTGATTTATGTCCAGATAGAAATAATACTATGTG  186

seq1  CTGCCTGGCAGGAAGCCCAGTGCAAGAAAAAGCGCTATGCTTCATTTTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGCAGGAAGCCCAGTGCAAGAAAAAGCGCTATGCTTCATTTTGC  236

seq1  AAAGTGCCATTAAAAGCCCCAGACCATGTCCAGACTGAGTTGTGAGATGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCATTAAAAGCCCCAGACCATGTCCAGACTGAGTTGTGAGATGC  286

seq1  TCCTTAGTTTTGGGCTCATTTAGAATGTCTTTAGTGTCAATAGGAACTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTTTTGGGCTCATTTAGAATGTCTTTAGTGTCAATAGGAACTTT  336

seq1  TACAACAGTTATTTCTTAGTCCGTTCATCCAGTTTCATTTGAACAAAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGTTATTTCTTAGTCCGTTCATCCAGTTTCATTTGAACAAAATA  386

seq1  TTTTCTCCATAGAGGATAATTAGTAAAATGTAAGAAAAATTAAATTGCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCATAGAGGATAATTAGTAAAATGTAAGAAAAATTAAATTGCAA  436

seq1  AATATTGTTTTCAATAAACCAATTTCAAAACTACTACCTTTTCATATTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTTTTCAATAAACCAATTTCAAAACTACTACCTTTTCATATTGG  486

seq1  TGCTCTTATTTGGGGCCTAGTAGTAGTAGTAGTAATAACAGTGTTAGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTATTTGGGGCCTAGTAGTAGTAGTAGTAATAACAGTGTTAGAAG  536

seq1  TAGTATTTAGCTCAAACTTGCATCAAACTTGTAAATGTCCTACCTCTGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTAGCTCAAACTTGCATCAAACTTGTAAATGTCCTACCTCTGCC  586

seq1  TTCCAAGTGCTAGGATTGTACATGAGTACGACCAAGCCCAACCAGGGTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTGCTAGGATTGTACATGAGTACGACCAAGCCCAACCAGGGTGA  636

seq1  GTCTTTCAATGAGACATTCCAATTTCTAACAGCTTTCTCAGGATAGTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAATGAGACATTCCAATTTCTAACAGCTTTCTCAGGATAGTCCT  686

seq1  CAAAATACATTTCCCTTCTAAATGCCACCCAGTAATGCTTATTTTTATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACATTTCCCTTCTAAATGCCACCCAGTAATGCTTATTTTTATTT  736

seq1  CTCGAAATTATTTTCAGTCTTTTTCTTTGATTTGCTCTTTGTCCCCTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAATTATTTTCAGTCTTTTTCTTTGATTTGCTCTTTGTCCCCTGAA  786

seq1  TGTAGGGGACAAACTTTGTTTTGCTTTCTTACCAAGCCTTCTGTTCTAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGACAAACTTTGTTTTGCTTTCTTACCAAGCCTTCTGTTCTAAG  836

seq1  AAAAACCACTAAGTAATGTCCCCGTCCACATGCATCTGCCAAAGCAGGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACTAAGTAATGTCCCCGTCCACATGCATCTGCCAAAGCAGGAC  886

seq1  TCAGCACTCTATTCATCAACATGATTGGTTTGTCATTAGTCTTCCTGGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTCTATTCATCAACATGATTGGTTTGTCATTAGTCTTCCTGGAG  936

seq1  TACAAGCCCCCAACTGGTATGGACTCTATCTTTTACAGACTTTAAAAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCCCCCAACTGGTATGGACTCTATCTTTTACAGACTTTAAAAGCA  986

seq1  TGAAAACAATCATAAAGATATTAATTATTGCATCAATTTAACATTTATCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAATCATAAAGATATTAATTATTGCATCAATTTAACATTTATCA  1036

seq1  TGTGTCTGGCCCTGTGGCAGACACTTTCCTTTCATTAGGCCATTTATGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGGCCCTGTGGCAGACACTTTCCTTTCATTAGGCCATTTATGCT  1086

seq1  TCACAAGAATTC  1110
      ||||||||||||
seq2  TCACAAGAATTC  1098


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