BAC Information

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BAC

Clone NameB6Ng01-329B13
Chromosome13 (Build37)
Map Location 117,466,566 - 117,570,786
singlet/doubletdoublet
Overlap geneLOC100041169
Upstream geneLOC100041045, EG623174, Isl1, EG668276, Gm280
Downstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807, Hcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329B13.bB6Ng01-329B13.g
ACCGA116168GA116169
length6331,054
definitionB6Ng01-329B13.b B6Ng01-329B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,466,566 - 117,467,198)(117,569,734 - 117,570,786)
sequence
gaattcctattcaaatcatcacagggtgagcattccaataacctttacta
aagtttctgtatgggttttgtgttcatctaaattatttagcctcagaaga
ttaccctgtttgggcagtagccagtcagccataggtccctccaatggaaa
taaaatgacttcctggtttttcttatttctgaattcatttgtggattcag
gtggtttcgtttgtttgtttgtttgtttgtttgtttgtttgtttttgcta
actagctctcacataaatgtcccttgtgttaaatacagttgacatgtaac
ccattcctttagtagaaacccaatatgtcttgtactactaagttttatgt
atgcaatactctcttgtctacatgcacacataacataaagctaaccgtat
aaatcacccataagtaatagattagcagcaataattaatgataaaataaa
ataattatactaatacaataaaagttacttagaacttagtgatgatagcc
aagagagtacaagcctttaacctcatggaactaaacaggaaggtcatgag
ttccaggtcggcctggacttaggaaagtaagaaatgaaagaaagaatgag
gaatggataaaggaaaggagggagggaggggga

gaattccaccaaacttggagtgtgatctctgaaaccaagaaccagaataa
gtaattttccccttaagttgtttttcttgggtatgtgccatagttataaa
agagtctgaatagcatgacctttgaacagactgaagtccagtatgaggaa
gagttggggtgcagcagtaaccctacctacttcattgaagtttcttctat
gtcctttcttgcagtgatggtgaacataatgaagagcccctcccctcctc
caacacaaacctgcaccctggaggcaggatattgcctagctctctttttc
ttgtgtgaagaatcatatgacaggggtaggaacaaagaacagagaatgat
gtggtcccccccacacacacacaggaagttaggtaggtagcaggcacctt
cttgcccaccagtaaagaaatagaactgattattctgtaggtggctttct
ccttttcagtttccaactaatcagcatcctgctgtgctggtgagagatgc
taaattgctgaacctgctgcctttcagatgagagcacctgcactcagggc
cctaaataactgatggttatttttcctggggactgagctgttgatcctta
tgttctcaccaaatgctaatttagtgattacactgtgtctgctcgaatta
tcattgtaatttcagtagaaaagcttctgttgggccagaacaaaaaaaga
aagtatgcatttttttacctaaataaaaatttttttgactgtatcctccg
aagtaaaaaaaaaaaaaaaaaatccccaaagaagaaacatactataattg
tttaccatttcttctacttgaatatatataactgtaagtctgtcttggtg
ttctggaaaacaagaataggggccaagtttgacagaaattactctaagca
cagcatgcagtatccagaggcagattagcctggctacataggagaccata
tctcaaagcaaacaagaaaacactgcacaaaagattagagtatagctgcc
atccatttcgtcttatcataatcaaataagcactattccaacatcatcat
atat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117466566_117467198
seq2: B6Ng01-329B13.b_49_681

seq1  GAATTCCTATTCAAATCATCACAGGGTGAGCATTCCAATAACCTTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTCAAATCATCACAGGGTGAGCATTCCAATAACCTTTACTA  50

seq1  AAGTTTCTGTATGGGTTTTGTGTTCATCTAAATTATTTAGCCTCAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTGTATGGGTTTTGTGTTCATCTAAATTATTTAGCCTCAGAAGA  100

seq1  TTACCCTGTTTGGGCAGTAGCCAGTCAGCCATAGGTCCCTCCAATGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGTTTGGGCAGTAGCCAGTCAGCCATAGGTCCCTCCAATGGAAA  150

seq1  TAAAATGACTTCCTGGTTTTTCTTATTTCTGAATTCATTTGTGGATTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGACTTCCTGGTTTTTCTTATTTCTGAATTCATTTGTGGATTCAG  200

seq1  GTGGTTTCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGCTA  250

seq1  ACTAGCTCTCACATAAATGTCCCTTGTGTTAAATACAGTTGACATGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTCTCACATAAATGTCCCTTGTGTTAAATACAGTTGACATGTAAC  300

seq1  CCATTCCTTTAGTAGAAACCCAATATGTCTTGTACTACTAAGTTTTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTTTAGTAGAAACCCAATATGTCTTGTACTACTAAGTTTTATGT  350

seq1  ATGCAATACTCTCTTGTCTACATGCACACATAACATAAAGCTAACCGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATACTCTCTTGTCTACATGCACACATAACATAAAGCTAACCGTAT  400

seq1  AAATCACCCATAAGTAATAGATTAGCAGCAATAATTAATGATAAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCCATAAGTAATAGATTAGCAGCAATAATTAATGATAAAATAAA  450

seq1  ATAATTATACTAATACAATAAAAGTTACTTAGAACTTAGTGATGATAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATACTAATACAATAAAAGTTACTTAGAACTTAGTGATGATAGCC  500

seq1  AAGAGAGTACAAGCCTTTAACCTCATGGAACTAAACAGGAAGGTCATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTACAAGCCTTTAACCTCATGGAACTAAACAGGAAGGTCATGAG  550

seq1  TTCCAGGTCGGCCTGGACTTAGGAAAGTAAGAAATGAAAGAAAGAATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTCGGCCTGGACTTAGGAAAGTAAGAAATGAAAGAAAGAATGAG  600

seq1  GAATGGATAAAGGAAAGGAGGGAGGGAGGGGGA  633
      |||||||||||||||||||||||||||||||||
seq2  GAATGGATAAAGGAAAGGAGGGAGGGAGGGGGA  633


seq1: chr13_117569734_117570786
seq2: B6Ng01-329B13.g_64_1117 (reverse)

seq1  ATATATGATGATGTTGGAATAGTGCTTATTTGATTATGATTAAGACGAAA  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATATATGATGATGTTGGAATAGTGCTTATTTGATTATGA-TAAGACGAAA  49

seq1  TGGATGGCAGCTATACTCTAATCTTTTGTGCAGTG-TTTCTTGTTTGCTT  99
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGATGGCAGCTATACTCTAATCTTTTGTGCAGTGTTTTCTTGTTTGCTT  99

seq1  TGAGATATGGTCTCCCTATGTAGCCCAGGCTAATCTGCCTCTGGATACTG  149
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TGAGATATGGTCT-CCTATGTAG-CCAGGCTAATCTGCCTCTGGATACTG  147

seq1  CATGCTGTGCTTAGAGTAATTTCTGTCAAACTTGG-CCCTATTCTTGTTT  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATGCTGTGCTTAGAGTAATTTCTGTCAAACTTGGCCCCTATTCTTGTTT  197

seq1  TCCAGAACACCAAGACAGACTTACAGTTATATATATTCAAGTAGAAGAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACACCAAGACAGACTTACAGTTATATATATTCAAGTAGAAGAAA  247

seq1  TGGTAAACAATTATAGTATGTTTCTTCTTTGGGGA--TTTTTTTTTTTTT  296
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TGGTAAACAATTATAGTATGTTTCTTCTTTGGGGATTTTTTTTTTTTTTT  297

seq1  TTTACTTCGGAGGATACAGTCAAAAAAATTTTTATTTAGGTAAAAAAATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCGGAGGATACAGTCAAAAAAATTTTTATTTAGGTAAAAAAATG  347

seq1  CATACTTTCTTTTTTTGTTCTGGCCCAACAGAAGCTTTTCTACTGAAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTTCTTTTTTTGTTCTGGCCCAACAGAAGCTTTTCTACTGAAATT  397

seq1  ACAATGATAATTCGAGCAGACACAGTGTAATCACTAAATTAGCATTTGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATAATTCGAGCAGACACAGTGTAATCACTAAATTAGCATTTGGT  447

seq1  GAGAACATAAGGATCAACAGCTCAGTCCCCAGGAAAAATAACCATCAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATAAGGATCAACAGCTCAGTCCCCAGGAAAAATAACCATCAGTT  497

seq1  ATTTAGGGCCCTGAGTGCAGGTGCTCTCATCTGAAAGGCAGCAGGTTCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGCCCTGAGTGCAGGTGCTCTCATCTGAAAGGCAGCAGGTTCAG  547

seq1  CAATTTAGCATCTCTCACCAGCACAGCAGGATGCTGATTAGTTGGAAACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAGCATCTCTCACCAGCACAGCAGGATGCTGATTAGTTGGAAACT  597

seq1  GAAAAGGAGAAAGCCACCTACAGAATAATCAGTTCTATTTCTTTACTGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGAAAGCCACCTACAGAATAATCAGTTCTATTTCTTTACTGGT  647

seq1  GGGCAAGAAGGTGCCTGCTACCTACCTAACTTCCTGTGTGTGTGTGGGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGAAGGTGCCTGCTACCTACCTAACTTCCTGTGTGTGTGTGGGGG  697

seq1  GGACCACATCATTCTCTGTTCTTTGTTCCTACCCCTGTCATATGATTCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACATCATTCTCTGTTCTTTGTTCCTACCCCTGTCATATGATTCTT  747

seq1  CACACAAGAAAAAGAGAGCTAGGCAATATCCTGCCTCCAGGGTGCAGGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGAAAAAGAGAGCTAGGCAATATCCTGCCTCCAGGGTGCAGGTT  797

seq1  TGTGTTGGAGGAGGGGAGGGGCTCTTCATTATGTTCACCATCACTGCAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGAGGAGGGGAGGGGCTCTTCATTATGTTCACCATCACTGCAAG  847

seq1  AAAGGACATAGAAGAAACTTCAATGAAGTAGGTAGGGTTACTGCTGCACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACATAGAAGAAACTTCAATGAAGTAGGTAGGGTTACTGCTGCACC  897

seq1  CCAACTCTTCCTCATACTGGACTTCAGTCTGTTCAAAGGTCATGCTATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTTCCTCATACTGGACTTCAGTCTGTTCAAAGGTCATGCTATTC  947

seq1  AGACTCTTTTATAACTATGGCACATACCCAAGAAAAACAACTTAAGGGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTTATAACTATGGCACATACCCAAGAAAAACAACTTAAGGGGA  997

seq1  AAATTACTTATTCTGGTTCTTGGTTTCAGAGATCACACTCCAAGTTTGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTATTCTGGTTCTTGGTTTCAGAGATCACACTCCAAGTTTGGT  1047

seq1  GGAATTC  1053
      |||||||
seq2  GGAATTC  1054


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