BAC Information

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BAC

Clone NameB6Ng01-329G02
Chromosome13 (Build37)
Map Location 70,121,032 - 70,274,353
singlet/doubletdoublet
Overlap geneEG620143, LOC100042291
Upstream geneAdcy2, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10
Downstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329G02.bB6Ng01-329G02.g
ACCGA116359GA116360
length1,192911
definitionB6Ng01-329G02.b B6Ng01-329G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,121,032 - 70,122,216)(70,273,440 - 70,274,353)
sequence
gaattcaagacctttggaagaactgtcattgctctttaccactgagacat
ctctccagcccagaagagcacccttggtagaaggttctgtcctggtttat
ggctgggatgttctcttcatcttctaacacagatgactggagagagtgag
ggcctttgtgggagtcatctgaagggaaaacgaggctcacactttgcctg
taataattttttcttttttttctggtgtctaatttgcattccctgcatgc
caacatgtaccctactcctgttcttcatagcttggagtgtcctatagccc
aaacttcagccacagagccagactgattctaacaaaacccaccaacagcc
tcagctttccctagacatcatgaagactcaaggatctctcaggagtctgt
cattctagcacctattgccacccattccctgagagcagaatgtgggcaaa
ccatggggtcttctgggtcccatagatatgtgttgatcgggagcaagcta
acagaatcttggatgacaagccacttgaagagtgaacacctcaacagaag
agacccagaagagattctcaactccagggatgagctgatcccatcggcat
tgcactggctggttttgtgggtcaacttgacatagctggagttatcatag
agaaaggagcctcccttgaagaaatgcctttatgagatccagctgcaagg
cattttctcaattataatcaagggtgggagggccctttgtagatggtgcc
atccctggactggtagtcctgggttctataagaaagcaagctgagcaagc
cagggggacacaatccagtaagcagcacccctccgtggtctctgcatcag
ctcctgccctgtgtgagttcctgtcctgacttcctttggtgatgaacaac
aatgtgtaagtgtaagctgaataaatcgtttcttccccaacttgcttctt
ggccatgatgttgtgcaggaatacaaaccctgactgagacagcagtcctt
gtgctagctgggattctggttatgcaaaagcatcaatgggctctgatagc
acccatgtttttaaggaagcttgaagaatcttgcagtggagaacttcaaa
aatagagcctccaacttacttccagatggagcctgtaatggacattaatg
gtttttgaggcaaggaattcaggagtccagcttttgtcaaca

tttgatatatcccaactgacaaggtgcagcacaaagacagaactgcctta
ctgcttcaaattagaaatccattggcgaaataaatgaccaggacttccct
tctaatgcattcgtctgtgaaaatgaaaacggatttcagccaagaaactt
agatgtaaaagggaattggctaccaaaacccagagaaaagaatcctatat
acaaattgttagaacagacaggcaattgtagagtgcccataaaacagaca
aggacaataaaaaggaacagactatttgcacgtgtagaacgagcaagttt
taagcagcatgatttcattcaaaagacatggaactagagagaaaactagc
caggcgtggcagctcacacctgcaatgcatatgtatgctctgaggagctg
aagacaggagggcagagcctactgtgggtgttaccatccttgggcggctg
agcctgggctatataagaaagcaggaagagtttgcctaagaaagcaggct
gagcaaaccagtaagagtgtgcgcgtttgtagttcctgccttggtttccc
cgacaatggactgtgagcagtcagtcaaataagcctgttcttccccaagc
tgcttttgatctaacatagccgcaaaacccaactgtaccagcgatcgtga
aggcattgctggacagataagaatggttacggcagagttgatggtaggat
gggaacgttgtttttacctgctgtggggattgatttccacagaacaggaa
caacttgtctggagttcatcaactccactgaaagtctgtacgtttcacgt
ctgctatcaatcttataatcttaagatacctgcatgactcacccaccagc
cttcataaaactttctgcttttctcactcacagacattttaaatggcaca
gaagggatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_70121032_70122216
seq2: B6Ng01-329G02.b_47_1238

seq1  GAATTCAAGACCTTTGGAAGAACTGTCATTGCTCTTTACCACTGAGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCTTTGGAAGAACTGTCATTGCTCTTTACCACTGAGACAT  50

seq1  CTCTCCAGCCCAGAAGAGCACCCTTGGTAGAAGGTTCTGTCCTGGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCAGAAGAGCACCCTTGGTAGAAGGTTCTGTCCTGGTTTAT  100

seq1  GGCTGGGATGTTCTCTTCATCTTCTAACACAGATGACTGGAGAGAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGATGTTCTCTTCATCTTCTAACACAGATGACTGGAGAGAGTGAG  150

seq1  GGCCTTTGTGGGAGTCATCTGAAGGGAAAACGAGGCTCACACTTTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGTGGGAGTCATCTGAAGGGAAAACGAGGCTCACACTTTGCCTG  200

seq1  TAATAATTTTTTCTTTTTTTTCTGGTGTCTAATTTGCATTCCCTGCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTTTTCTTTTTTTTCTGGTGTCTAATTTGCATTCCCTGCATGC  250

seq1  CAACATGTACCCTACTCCTGTTCTTCATAGCTTGGAGTGTCCTATAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTACCCTACTCCTGTTCTTCATAGCTTGGAGTGTCCTATAGCCC  300

seq1  AAACTTCAGCCACAGAGCCAGACTGATTCTAACAAAACCCACCAACAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAGCCACAGAGCCAGACTGATTCTAACAAAACCCACCAACAGCC  350

seq1  TCAGCTTTCCCTAGACATCATGAAGACTCAAGGATCTCTCAGGAGTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTCCCTAGACATCATGAAGACTCAAGGATCTCTCAGGAGTCTGT  400

seq1  CATTCTAGCACCTATTGCCACCCATTCCCTGAGAGCAGAATGTGGGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGCACCTATTGCCACCCATTCCCTGAGAGCAGAATGTGGGCAAA  450

seq1  CCATGGGGTCTTCTGGGTCCCATAGATATGTGTTGATCGGGAGCAAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGGTCTTCTGGGTCCCATAGATATGTGTTGATCGGGAGCAAGCTA  500

seq1  ACAGAATCTTGGATGACAAGCCACTTGAAGAGTGAACACCTCAACAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCTTGGATGACAAGCCACTTGAAGAGTGAACACCTCAACAGAAG  550

seq1  AGACCCAGAAGAGATTCTCAACTCCAGGGATGAGCTGATCCCATCGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGAAGAGATTCTCAACTCCAGGGATGAGCTGATCCCATCGGCAT  600

seq1  TGCACTGGCTGGTTTTGTGGGTCAACTTGACATAGCTGGAGTTATCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGCTGGTTTTGTGGGTCAACTTGACATAGCTGGAGTTATCATAG  650

seq1  AGAAAGGAGCCTCCCTTGAAGAAATGCCTTTATGAGATCCAGCTGCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGCCTCCCTTGAAGAAATGCCTTTATGAGATCCAGCTGCAAGG  700

seq1  CATTTTCTCAATTATAATCAAGGGTGGGAGGGCCCTTTGTAGATGGTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCAATTATAATCAAGGGTGGGAGGGCCCTTTGTAGATGGTGCC  750

seq1  ATCCCTGGACTGGTAGTCCTGGGTTCTATAAGAAAGCAAGCTGAGCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGACTGGTAGTCCTGGGTTCTATAAGAAAGCAAGCTGAGCAAGC  800

seq1  CAGGGGGACACAATCCAGTAAGCAGCACCCCTCCGTGGTCTCTGCATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGACACAATCCAGTAAGCAGCACCCCTCCGTGGTCTCTGCATCAG  850

seq1  CTCCTGCCCTGTGTGAGTTCCTGTCCTGACTTCCTTTGGTGATGAACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCCTGTGTGAGTTCCTGTCCTGACTTCCTTTGGTGATGAACAAC  900

seq1  AATGTGTAAGTGTAAGCTGAATAAATCGTTTCTTCCCCAACTTGCTTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTAAGTGTAAGCTGAATAAATCGTTTCTTCCCCAACTTGCTTCTT  950

seq1  GGCCATGATGTTTGTGCAGGAATACAAACCCTGACTGAGACAGCAGTCCT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGATG-TTGTGCAGGAATACAAACCCTGACTGAGACAGCAGTCCT  999

seq1  TGTGCTAGCTGGGATTCTGGTTATGCAAAAGCATCAATGGGCTCTGATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAGCTGGGATTCTGGTTATGCAAAAGCATCAATGGGCTCTGATAG  1049

seq1  CACCCCATGTTTT--AGGAAGC-TGA--GATC-TGCAGTGGAGAACT--C  1092
      || ||||||||||  ||||||| |||   ||| ||||||||||||||   
seq2  CA-CCCATGTTTTTAAGGAAGCTTGAAGAATCTTGCAGTGGAGAACTTCA  1098

seq1  AAAATAGAGCCTCCAAC-TACTTCCAGAT-GAG-CTGTAAATTGACATAA  1139
      ||||||||||||||||| ||||||||||| ||| |||| ||| ||||| |
seq2  AAAATAGAGCCTCCAACTTACTTCCAGATGGAGCCTGT-AATGGACATTA  1147

seq1  AATGTTTTTGAGGAAAAGGAGATCAAGGAG-CAAGCTTTTGTCAACA  1185
      |  ||||||||||  ||||| ||  ||||| | ||||||||||||||
seq2  ATGGTTTTTGAGG-CAAGGA-ATTCAGGAGTCCAGCTTTTGTCAACA  1192


seq1: chr13_70273440_70274353
seq2: B6Ng01-329G02.g_78_988 (reverse)

seq1  AGTATCCTTCTGTGTGCTATTTAATATGTCTTGTTGGAGTGAG-AAAGCA  49
      ||||||| | | ||||| |||||| ||||| |||  ||||||| ||||||
seq2  AGTATCCCT-TCTGTGCCATTTAAAATGTC-TGT--GAGTGAGAAAAGCA  46

seq1  GAAGTGTTTTATG-AGGCTGGTGGGTGTAGTCATGCAGGTATCCTTAAGA  98
      |||  |||||||| ||||||||||||| |||||||||||||| |||||||
seq2  GAA-AGTTTTATGAAGGCTGGTGGGTG-AGTCATGCAGGTAT-CTTAAGA  93

seq1  TTAATAAGATATGATTAGCAGACGTGAAACGTACAGACTTTCAGTGGGAG  148
      || ||||||| ||| |||||||||||||||||||||||||||||| ||||
seq2  TT-ATAAGAT-TGA-TAGCAGACGTGAAACGTACAGACTTTCAGT-GGAG  139

seq1  TTTGATGAACT-CAGAC-AGTTGTT-CTG-TCTGT-GAAATCATTCCCCA  193
       |||||||||| ||||| ||||||| ||| ||||| ||||||| ||||||
seq2  -TTGATGAACTCCAGACAAGTTGTTCCTGTTCTGTGGAAATCAATCCCCA  188

seq1  CAGCAGGTAAAA--CACGTTCCCATCCTACCATCAACTCTGCCGTAACCA  241
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTAAAAACAACGTTCCCATCCTACCATCAACTCTGCCGTAACCA  238

seq1  TTCTTATCTGTCCAGCAATGCCTTCACGATCGCTGGTACAGTTGGGTTTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATCTGTCCAGCAATGCCTTCACGATCGCTGGTACAGTTGGGTTTT  288

seq1  GCGGCTATGTTAGATCAAAAGCAGCTTGGGGAAGAACAGGCTTATTTGAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTATGTTAGATCAAAAGCAGCTTGGGGAAGAACAGGCTTATTTGAC  338

seq1  TGACTGCTCACAGTCCATTGTCGGGGAAACCAAGGCAGGAACTACAAACG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTCACAGTCCATTGTCGGGGAAACCAAGGCAGGAACTACAAACG  388

seq1  CGCACACTCTTACTGGTTTGCTCAGCCTGCTTTCTTAGGCAAACTCTTCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACTCTTACTGGTTTGCTCAGCCTGCTTTCTTAGGCAAACTCTTCC  438

seq1  TGCTTTCTTATATAGCCCAGGCTCAGCCGCCCAAGGATGGTAACACCCAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTATATAGCCCAGGCTCAGCCGCCCAAGGATGGTAACACCCAC  488

seq1  AGTAGGCTCTGCCCTCCTGTCTTCAGCTCCTCAGAGCATACATATGCATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTCTGCCCTCCTGTCTTCAGCTCCTCAGAGCATACATATGCATT  538

seq1  GCAGGTGTGAGCTGCCACGCCTGGCTAGTTTTCTCTCTAGTTCCATGTCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTGAGCTGCCACGCCTGGCTAGTTTTCTCTCTAGTTCCATGTCT  588

seq1  TTTGAATGAAATCATGCTGCTTAAAACTTGCTCGTTCTACACGTGCAAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGAAATCATGCTGCTTAAAACTTGCTCGTTCTACACGTGCAAAT  638

seq1  AGTCTGTTCCTTTTTATTGTCCTTGTCTGTTTTATGGGCACTCTACAATT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTCCTTTTTATTGTCCTTGTCTGTTTTATGGGCACTCTACAATT  688

seq1  GCCTGTCTGTTCTAACAATTTGTATATAGGATTCTTTTCTCTGGGTTTTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTGTTCTAACAATTTGTATATAGGATTCTTTTCTCTGGGTTTTG  738

seq1  GTAGCCAATTCCCTTTTACATCTAAGTTTCTTGGCTGAAATCCGTTTTCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAATTCCCTTTTACATCTAAGTTTCTTGGCTGAAATCCGTTTTCA  788

seq1  TTTTCACAGACGAATGCATTAGAAGGGAAGTCCTGGTCATTTATTTCGCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGACGAATGCATTAGAAGGGAAGTCCTGGTCATTTATTTCGCC  838

seq1  AATGGATTTCTAATTTGAAGCAGTAAGGCAGTTCTGTCTTTGTGCTGCAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTTCTAATTTGAAGCAGTAAGGCAGTTCTGTCTTTGTGCTGCAC  888

seq1  CTTGTCAGTTGGGATATATCAAA  914
      |||||||||||||||||||||||
seq2  CTTGTCAGTTGGGATATATCAAA  911


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