BAC Information

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BAC

Clone NameB6Ng01-331J07
Chromosome13 (Build37)
Map Location 86,028,825 - 86,153,262
singlet/doubletdoublet
Overlap geneLOC675662
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
Downstream geneCox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331J07.bB6Ng01-331J07.g
ACCGA117907GA117908
length1,174786
definitionB6Ng01-331J07.b B6Ng01-331J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,028,825 - 86,029,998)(86,152,480 - 86,153,262)
sequence
gaattccatttacagtgtaccacaagataatgagggacccttcccccagt
tggttctgattggtaaataaagatgatgacagtcaatggcagtgcaaata
gaggtgagacttttaggatttccaggctagggacagacaggagtaggaaa
gagatattccatgttgggaggaagagaccccaaccctgagccatgtagga
cagaaagcatagctgccaagtaggagccaggggactgaggcccaagaggg
ctgcatgtctgggttcagggcagcaaagatggagtatagacttcagtaaa
taataactcaggcatatcagagggaaagtggattagccacatggaggtta
ggaagtggccaaaccattaagctgtttaaagcatataaaaataaaaaggc
tgtgtgtatgtgtctttcattaagagcaaagaacattggggctggtaggc
ctccaccactgcaggtattgatttgagtagcattaatttggtaccataat
tggtagatacctaaagacaccactaagcagagcaaacaaagtgtaaaata
ttaaaaggcaaacttggtataagtatagcagaagagctttacaagaacaa
tagtctgctcctaattttatctatacataattggtctacatagttagctt
gagaacatccagagctacaaagtgagacttaaaagaaggaaagagaggag
agagagggcaaagggggcagggagagaaagagaaagagaaagagaaagag
aaagagaaagagaaagagaaagagaaagagagaaagagagagaaagagaa
agagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaag
agaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagag
agagccagaaatttttcaattattttgaatattaggtatcaattatgggt
tgaattacagttttgttagtaagaattggaatgtgacttgattactaaaa
atgttaaaacaagggttaggaaatgatagaacttgtaattaaggaaatcc
tagaaattcaagcactaggaatacaaatgaatgataatccggtcttatct
gctgtttttcagcttgggatcgttcttataatctagcttaaccttgacta
gcgtcagtaagggattcactagtg

gaattcagaaaatagaattcaacatgagaaaggaaagaagaagttagttt
actgggagaatgtgccatttgcacatgaatacagattatgtatttgtgga
catgggttatttgaaatgagttgtggaaagtggacattgcaattggagac
acaaccaacgaaatggggacagaaaatctcggagtatatttgtgaagtag
aaaataactcacttacaagagctacaaggtcatatgttataaaagattca
gtaacaaatgccaagcaaagtagttcaagcggaacccagtaataacgatt
gagcccatgaacaggaagcttgtacacttacaggtctgcattagtaagat
taatctggcattaataggtagaattgactggaatagaaaaagctaaagag
cagtaaaaaggttattatgatcagtcatcagaaaagtatgtgagaagaaa
tcactgtgatgtaacagaaaagaccattccaagagattaaggaagtcaag
ccagtggaatgtagtgattaattgtaggtgattgtaaatggatagaggac
atagagtgacaataagattttaagcttgatagattagaaaattatattat
tatcagaaatacattttatgggatctattgaacctactttgaaattctat
ttagaacttcacttcatatacatggaaaggcagaccttaaaaatgaggta
aaagtcaaaatggtggtggctttgtgatcctggtgtgtatgtgtgcatga
ctgtgttgtgtgagaaagagatgagggggctgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86028825_86029998
seq2: B6Ng01-331J07.b_48_1221

seq1  GAATTCCATTTACAGTGTACCACAAGATAATGAGGGACCCTTCCCCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTACAGTGTACCACAAGATAATGAGGGACCCTTCCCCCAGT  50

seq1  TGGTTCTGATTGGTAAATAAAGATGATGACAGTCAATGGCAGTGCAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGATTGGTAAATAAAGATGATGACAGTCAATGGCAGTGCAAATA  100

seq1  GAGGTGAGACTTTTAGGATTTCCAGGCTAGGGACAGACAGGAGTAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGACTTTTAGGATTTCCAGGCTAGGGACAGACAGGAGTAGGAAA  150

seq1  GAGATATTCCATGTTGGGAGGAAGAGACCCCAACCCTGAGCCATGTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTCCATGTTGGGAGGAAGAGACCCCAACCCTGAGCCATGTAGGA  200

seq1  CAGAAAGCATAGCTGCCAAGTAGGAGCCAGGGGACTGAGGCCCAAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCATAGCTGCCAAGTAGGAGCCAGGGGACTGAGGCCCAAGAGGG  250

seq1  CTGCATGTCTGGGTTCAGGGCAGCAAAGATGGAGTATAGACTTCAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTCTGGGTTCAGGGCAGCAAAGATGGAGTATAGACTTCAGTAAA  300

seq1  TAATAACTCAGGCATATCAGAGGGAAAGTGGATTAGCCACATGGAGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTCAGGCATATCAGAGGGAAAGTGGATTAGCCACATGGAGGTTA  350

seq1  GGAAGTGGCCAAACCATTAAGCTGTTTAAAGCATATAAAAATAAAAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGCCAAACCATTAAGCTGTTTAAAGCATATAAAAATAAAAAGGC  400

seq1  TGTGTGTATGTGTCTTTCATTAAGAGCAAAGAACATTGGGGCTGGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTCTTTCATTAAGAGCAAAGAACATTGGGGCTGGTAGGC  450

seq1  CTCCACCACTGCAGGTATTGATTTGAGTAGCATTAATTTGGTACCATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCACTGCAGGTATTGATTTGAGTAGCATTAATTTGGTACCATAAT  500

seq1  TGGTAGATACCTAAAGACACCACTAAGCAGAGCAAACAAAGTGTAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATACCTAAAGACACCACTAAGCAGAGCAAACAAAGTGTAAAATA  550

seq1  TTAAAAGGCAAACTTGGTATAAGTATAGCAGAAGAGCTTTACAAGAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGCAAACTTGGTATAAGTATAGCAGAAGAGCTTTACAAGAACAA  600

seq1  TAGTCTGCTCCTAATTTTATCTATACATAATTGGTCTACATAGTTAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGCTCCTAATTTTATCTATACATAATTGGTCTACATAGTTAGCTT  650

seq1  GAGAACATCCAGAGCTACAAAGTGAGACTTAAAAGAAGGAAAGAGAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATCCAGAGCTACAAAGTGAGACTTAAAAGAAGGAAAGAGAGGAG  700

seq1  AGAGAGGGCAAAGGGGGCAGGGAGAGAAAGAGAAAGAGAAAGAGAAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGCAAAGGGGGCAGGGAGAGAAAGAGAAAGAGAAAGAGAAAGAG  750

seq1  AAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAGAAAGAGAGAGAAAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAGAAAGAGAGAGAAAGAGAA  800

seq1  AGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAG  850

seq1  AGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAG  900

seq1  AGAGCCAGAAATTTTTCAATTA-TTTGAATATTAGGTATCAATTAT-GGT  948
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  AGAGCCAGAAATTTTTCAATTATTTTGAATATTAGGTATCAATTATGGGT  950

seq1  TGAATTACAGTTTTGTTAGTA--GATTGG-ATGTGACTTGATTACTAAAA  995
      |||||||||||||||||||||   ||||| ||||||||||||||||||||
seq2  TGAATTACAGTTTTGTTAGTAAGAATTGGAATGTGACTTGATTACTAAAA  1000

seq1  ATGTTAAAACAAGGG-TAGG-AATGATAG-ACTTGTAATT-AGGAAATCC  1041
      ||||||||||||||| |||| |||||||| |||||||||| |||||||||
seq2  ATGTTAAAACAAGGGTTAGGAAATGATAGAACTTGTAATTAAGGAAATCC  1050

seq1  TAG-AATTCAAGGCAC-AGGGATACAAATTGAAATGATAATCCGGTCTTT  1089
      ||| ||||||| |||| ||| ||||||||   ||||||||||||||| ||
seq2  TAGAAATTCAA-GCACTAGGAATACAAAT--GAATGATAATCCGGTC-TT  1096

seq1  ATCCTGCTGTTTTTTCAGTCTTGTGATCATTTTCTTTATTATTCTGGGTT  1139
      || |||||| |||||||| |||| ||||   |||||   || ||| | ||
seq2  AT-CTGCTG-TTTTTCAG-CTTGGGATC--GTTCTT--ATAATCTAGCTT  1139

seq1  ACCTTTGACTAGCTGTCAGTAA-GGATGCACTAGTG  1174
      | | ||||||||| |||||||| |||| ||||||||
seq2  AACCTTGACTAGC-GTCAGTAAGGGATTCACTAGTG  1174


seq1: chr13_86152480_86153262
seq2: B6Ng01-331J07.g_69_854 (reverse)

seq1  CATACAGCCCCCTCATCTCTTTCTCACAC-ACACAGTCATGCACACATAC  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATACAGCCCCCTCATCTCTTTCTCACACAACACAGTCATGCACACATAC  50

seq1  ACACCAGGATCAC-AAGCCACCACCATTTTGACTTTTACCTCATTTTTAA  98
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGATCACAAAGCCACCACCATTTTGACTTTTACCTCATTTTTAA  100

seq1  GGTCTGCC-TTCCATGTATATGAAGTGAAGTTCTAAATAGAATTTCAAAG  147
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCCTTTCCATGTATATGAAGTGAAGTTCTAAATAGAATTTCAAAG  150

seq1  TAGGTTCAATAGATCCCATAAAATGTATTTCTGATAATAATATAATTTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCAATAGATCCCATAAAATGTATTTCTGATAATAATATAATTTTC  200

seq1  TAATCTATCAAGCTTAAAATCTTATTGTCACTCTATGTCCTCTATCCATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTATCAAGCTTAAAATCTTATTGTCACTCTATGTCCTCTATCCATT  250

seq1  TACAATCACCTACAATTAATCACTACATTCCACTGGCTTGACTTCCTTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCACCTACAATTAATCACTACATTCCACTGGCTTGACTTCCTTAA  300

seq1  TCTCTTGGAATGGTCTTTTCTGTTACATCACAGTGATTTCTTCTCACATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGAATGGTCTTTTCTGTTACATCACAGTGATTTCTTCTCACATA  350

seq1  CTTTTCTGATGACTGATCATAATAACCTTTTTACTGCTCTTTAGCTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGATGACTGATCATAATAACCTTTTTACTGCTCTTTAGCTTTTT  400

seq1  CTATTCCAGTCAATTCTACCTATTAATGCCAGATTAATCTTACTAATGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCAGTCAATTCTACCTATTAATGCCAGATTAATCTTACTAATGCA  450

seq1  GACCTGTAAGTGTACAAGCTTCCTGTTCATGGGCTCAATCGTTATTACTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTAAGTGTACAAGCTTCCTGTTCATGGGCTCAATCGTTATTACTG  500

seq1  GGTTCCGCTTGAACTACTTTGCTTGGCATTTGTTACTGAATCTTTTATAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGCTTGAACTACTTTGCTTGGCATTTGTTACTGAATCTTTTATAA  550

seq1  CATATGACCTTGTAGCTCTTGTAAGTGAGTTATTTTCTACTTCACAAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGACCTTGTAGCTCTTGTAAGTGAGTTATTTTCTACTTCACAAATA  600

seq1  TACTCCGAGATTTTCTGTCCCCATTTCGTTGGTTGTGTCTCCAATTGCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCGAGATTTTCTGTCCCCATTTCGTTGGTTGTGTCTCCAATTGCAA  650

seq1  TGTCCACTTTCCACAACTCATTTCAAATAACCCATGTCCACAAATACATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTTTCCACAACTCATTTCAAATAACCCATGTCCACAAATACATA  700

seq1  ATCTGTATTCATGTGCAAATGGCACATTCTCCCAGTAAACTAACTTCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATTCATGTGCAAATGGCACATTCTCCCAGTAAACTAACTTCTTC  750

seq1  TTTCCTTTCTCATGTTGAATTCTATTTTCTGAATTC  783
      ||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCTCATGTTGAATTCTATTTTCTGAATTC  786


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