BAC Information

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BAC

Clone NameB6Ng01-331J16
Chromosome13 (Build37)
Map Location 82,232,508 - 82,233,592
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331J16.bB6Ng01-331J16.g
ACCGA117925GA117926
length1,1031,175
definitionB6Ng01-331J16.b B6Ng01-331J16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgcctttcctctgtggtgaagagaacctgcaacaattgctgt
caattatcccatgtgggctggtgagagaaaagaagggactctacaaagta
ggtgagagctttagggttctctgagaaagagggattatgggtcttccaat
tgtaaagattgactgaggaaaatggccagcactgcaatggttgatttccc
tgcttgtccatcagcccatatgcccgcaagggaagggccactgacatctg
agggaccacccttcatctgctctgggttccttgagctggtccctccccag
gcttttctgggtccatgtgtggggctgatggtccaaggatggtggtgaca
cctgcaccctgccggctgatccctggagttggaggaggtggtggtagggc
ggcagcagagaacctgaaagtaggaggtcagcatctgggtctgacaggat
ttttttcttaggcgtttcccggagggtctaagtactaaccagtaggggac
ctgtggaagagagaaaagggcaggcccagagatgtgagtggtttctgtcc
catgattttcaaaacagtcatcagtcagagtccgaacacaaaaagacaca
ccaagacacacaagacacacaatagaaaccttccccaggcgaccaccaca
gaataagaaccgaatcagacgaccttgtcagggtctttctcctagtggga
gactggagcatcctctgatttcctctgttgccacggcacatctgcccaac
gctttggcaactatcagaagcactgaaagcaaagcaaaatcagaaggcag
tctagtaaaggacacacaagtgaacaagacagacagacagacagggatcc
cactttatcttgctctagtaagatgtttactgatccaacgtgttggagcc
cctcagcatgcaggcaagaagagaccccgaaatgaacaaaggaacattat
gttttataccttttaaggggcagaacttagggaacagggctacctggctt
tattcttaattggtgttagcaagtaaccctttcaggcaataggggtgaac
taccctttgggacctagtcccttcacctctgcctggccccttatgaattt
tac
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gggaaaagggtaccagccagataaaatgcgagctaatcggtcaaggaaaa
agccaaaagtggctggcaaaggccagcttgctgcttggcctcctggcagt
cggtttcaaggtcatagtgcacctgcgccctatgcagagccctcgccctg
tatagtgcatcagccctgtgtagtgcatcagccctgcgcagagaggcaat
ggacagagaggcaatgcgcagactcgttcattccaaaggaggaacaaagg
aaaatacaacaggcatttccggtctttgaaggagccgagggtgggcgtgt
ccacgctccggtagaatatgtgcaaattaaagagcttgccgagtcggtcc
gtaaatatggaatcaatgctaattttaccttggtgcagttagacaggctt
gccggcatgacactaactcctgccgactggcaaatgattgcaaaagccgc
tctccctagtatgggcaaatatatggaatggagagctctgtggcaagagg
ctgcacacgcgcaggcccgagcaaacgctgctgctttgactccagagcag
agagattggacttttgacttgttaacgggtcagggagcttattctgctga
tcaaacaaactaccattggggagcttatgcccaaatttcctccacggcta
ttagggcctggaaggcgctctcccgagcaggtgaagccactggactaaca
aagatcgtccagggacctcagagtcattctcagattttgtggccagaatg
acagaggcagcagagcgtatttttggagattcagagcaagccgcacctct
ggtagaacagctcatttatgagcaagccacaaaggagtgccgagcggcca
tagccccaagaaagaacaaaggcttacaagactggctcaggtttgtcggg
agcttgggggactctcacaatgcagcttagcggcgccatcttcatccaga
cgctcgtagcagaatgatcagaggacatgtttactgcggaagcctgggca
tctagaaagatgcagagcctccagaataaaaaagcggggacttcctcact
ctctttgctctaaggttgcaagtatcatacgagcgatcaggtgtcgctct
gtgagaggatatagagggcacgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82232508_82233592
seq2: B6Ng01-331J16.b_50_1152

seq1  GAATTCTCTGCCTTTCCTCTGTGGTGAAGAGAACCTGCAACAATTGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCTTTCCTCTGTGGTGAAGAGAACCTGCAACAATTGCTGT  50

seq1  CAATTATCCCATGTGGGCTGGTGAGAGAAAAGAAGGGACTCTACAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATCCCATGTGGGCTGGTGAGAGAAAAGAAGGGACTCTACAAAGTA  100

seq1  GGTGAGAGCTTTAGGGTTCTCTGAGAAAGAGGGATTATGGGTCTTCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAGCTTTAGGGTTCTCTGAGAAAGAGGGATTATGGGTCTTCCAAT  150

seq1  TGTAAAGATTGACTGAGGAAAATGGCCAGCACTGCAATGGTTGATTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGATTGACTGAGGAAAATGGCCAGCACTGCAATGGTTGATTTCCC  200

seq1  TGCTTGTCCATCAGCCCATATGCCCGCAAGGGAAGGGCCACTGACATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCCATCAGCCCATATGCCCGCAAGGGAAGGGCCACTGACATCTG  250

seq1  AGGGACCACCCTTCATCTGCTCTGGGTTCCTTGAGCTGGTCCCTCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCACCCTTCATCTGCTCTGGGTTCCTTGAGCTGGTCCCTCCCCAG  300

seq1  GCTTTTCTGGGTCCATGTGTGGGGCTGATGGTCCAAGGATGGTGGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTGGGTCCATGTGTGGGGCTGATGGTCCAAGGATGGTGGTGACA  350

seq1  CCTGCACCCTGCCGGCTGATCCCTGGAGTTGGAGGAGGTGGTGGTAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACCCTGCCGGCTGATCCCTGGAGTTGGAGGAGGTGGTGGTAGGGC  400

seq1  GGCAGCAGAGAACCTGAAAGTAGGAGGTCAGCATCTGGGTCTGACAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGAGAACCTGAAAGTAGGAGGTCAGCATCTGGGTCTGACAGGAT  450

seq1  TTTTTTCTTAGGCGTTTCCCGGAGGGTCTAAGTACTAACCAGTAGGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTAGGCGTTTCCCGGAGGGTCTAAGTACTAACCAGTAGGGGAC  500

seq1  CTGTGGAAGAGAGAAAAGGGCAGGCCCAGAGATGTGAGTGGTTTCTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAGAGAGAAAAGGGCAGGCCCAGAGATGTGAGTGGTTTCTGTCC  550

seq1  CATGATTTTCAAAACAGTCATCAGTCAGAGTCCGAACACAAAAAGACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTTCAAAACAGTCATCAGTCAGAGTCCGAACACAAAAAGACACA  600

seq1  CCAAGACACACAAGACACACAATAGAAACCTTCCCCAGGCGACCACCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACACACAAGACACACAATAGAAACCTTCCCCAGGCGACCACCACA  650

seq1  GAATAAGAACCGAATCAGACGACCTTGTCAGGGTCTTTCTCCTAGTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAACCGAATCAGACGACCTTGTCAGGGTCTTTCTCCTAGTGGGA  700

seq1  GACTGGAGCATCCTCTGATTTCCTCTGTTGCCACGGCACATCTGCCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGCATCCTCTGATTTCCTCTGTTGCCACGGCACATCTGCCCAAC  750

seq1  GCTTTGGCAACTATCAGAAGCACTGAAAGCAAAGCAAAATCAGAAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCAACTATCAGAAGCACTGAAAGCAAAGCAAAATCAGAAGGCAG  800

seq1  TCTAGTAAAGGACACACAAGTGAACAAGACAGACAGACAGACAGGGATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAAAGGACACACAAGTGAACAAGACAGACAGACAGACAGGGATCC  850

seq1  CACTTTATCTTGCTCTAGTAAGATGTTTACTGATCCAACGTGTTGGAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATCTTGCTCTAGTAAGATGTTTACTGATCCAACGTGTTGGAGCC  900

seq1  CCTCAGCATGCAGGCAAGAAGAGACCCCG-AATGAACAAA-GAACA-TAT  947
      ||||||||||||||||||||||||||||| |||||||||| ||||| |||
seq2  CCTCAGCATGCAGGCAAGAAGAGACCCCGAAATGAACAAAGGAACATTAT  950

seq1  TGTTTATACCTTTTAAGGGGCAG-ACTTAGGGAACAGGGCTACCTGGC-T  995
        ||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  GTTTTATACCTTTTAAGGGGCAGAACTTAGGGAACAGGGCTACCTGGCTT  1000

seq1  TATTC-TAATTGGTG-TAGCAAGTAACCCTTTCAGGC-ATA-GGGTG-AC  1040
      ||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||
seq2  TATTCTTAATTGGTGTTAGCAAGTAACCCTTTCAGGCAATAGGGGTGAAC  1050

seq1  TA-CCTTTGG--CCTAGTCCC-TCA-CTCTGCCTG--CCCTTATG-ATTT  1082
      || |||||||  ||||||||| ||| |||||||||  |||||||| ||||
seq2  TACCCTTTGGGACCTAGTCCCTTCACCTCTGCCTGGCCCCTTATGAATTT  1100

seq1  TAC  1085
      |||
seq2  TAC  1103