BAC Information

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BAC

Clone NameB6Ng01-331K13
Chromosome13 (Build37)
Map Location 71,497,500 - 71,624,394
singlet/doubletdoublet
Overlap geneLOC627230
Upstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC100042360, Irx1, LOC100042828, LOC100042832, LOC100042836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331K13.bB6Ng01-331K13.g
ACCGA117967GA117968
length994859
definitionB6Ng01-331K13.b B6Ng01-331K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,497,500 - 71,498,326)(71,623,846 - 71,624,394)
sequence
gaattcatcacgatcttactcgaaaaagaagatgaatgttagatgcttta
cataagcctcctgggatcccctgagatgcacaaaaagcagagagaaaggg
ttcgaacatgtccagtccaagagaacaaagaaacagaaagtttgacagct
ggaaagtgaggatagagcagttctacagagaggtttaaaacagtaactac
ttaagtataagcagaataaaatgctaatcaacacacacacaaagcagaca
aatgaacaaaattaaaaaaaataaagagatagagaggttaaagaatacac
ttctgggacagacgcctctacagtttagagaaactgaaaccaagacaaga
gaaatcccacggaaacggcaaatgaaagatgaccacagtggctaagctgg
cattagacaatatatgcactcagctgaaatctgtcagaagagacggagga
gctcattatataatgatgaagagatcaattcatccagaggatactgctat
tatcagtaggtatgcacccaacatcagctcaccaaaatgtataaagcaaa
tattaacagagctacagggagaaatggatagcaatacaatcagagtgggg
aacttcggtagctcactcccaccaaaggctagatcatccggacaggaaat
caataaggacacagcagagtggactgaagtaagggttcgtgcgagctctg
cgccccacagctgcagcgcacgatcccctcaagcacacagatgagcatcc
aggaaagatctctactgggcacagacaaatactgacttaagaaggctgca
cgcatctgtagtatccttttcaaccacaatgttgtgaatctagagatcga
tatcgggagggaaaacaaaaccaaagacaacaccgtgtgtggaggttgaa
caacactcagcagcagcatgtcggcccgcggaagtcgtaagggataaaaa
aacaccatgggatgtggcaagcgcggggtatcggttatcaagga

aatatgttgaaatgaggaagctctaactcagtactgattacttatttagt
tgttaatagaaaaacggagggaaaaatagatggaaatatccttcctataa
ttctgattctattaattgccagagcatgccactatggctgaattcagttc
tcctgcaaaaggaacagaattgaaagacaaaacagcaacagcagactcca
gtctacccaggaagctgtccaacaccctgctggtgaatgtggtcatagac
agggttgacttccaggctgtacttttccgggcttgcccgtctccatggtc
acacctctccttcttagtcctcaataatcgctcactttacagatcaaacc
aactccacctcttaagtggctagagcaggttccgagatctcaaatgttag
caggctttggtctcatcccacccacttccatgttttgttttttggttttt
ggtttttttgtttttttttttttagatttttttaatttaaatatttttta
ttatgtattttcctcaattacatttccaatgctatcccaaaagtccccca
taccctcccccccactcccctacccacccattcccactttttggccctgg
cattcccctgtactggggcatataaagtttgcaagtccaatgggcctctc
tttccagtgatggcctactaggccatcttttgatacatatgcagctagag
tcaagagctctggggtactggttagtttcatattgttgttgcacctacag
ggttgcagatcgctttagctcctttgggtactttctctggctcccccatt
ggaggccctgtgatccatccaatagtttgactgtgagcatccacttctgt
gtttgctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71497500_71498326
seq2: B6Ng01-331K13.b_47_873

seq1  GAATTCATCACGATCTTACTCGAAAAAGAAGATGAATGTTAGATGCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACGATCTTACTCGAAAAAGAAGATGAATGTTAGATGCTTTA  50

seq1  CATAAGCCTCCTGGGATCCCCTGAGATGCACAAAAAGCAGAGAGAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCCTCCTGGGATCCCCTGAGATGCACAAAAAGCAGAGAGAAAGGG  100

seq1  TTCGAACATGTCCAGTCCAAGAGAACAAAGAAACAGAAAGTTTGACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAACATGTCCAGTCCAAGAGAACAAAGAAACAGAAAGTTTGACAGCT  150

seq1  GGAAAGTGAGGATAGAGCAGTTCTACAGAGAGGTTTAAAACAGTAACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGAGGATAGAGCAGTTCTACAGAGAGGTTTAAAACAGTAACTAC  200

seq1  TTAAGTATAAGCAGAATAAAATGCTAATCAACACACACACAAAGCAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATAAGCAGAATAAAATGCTAATCAACACACACACAAAGCAGACA  250

seq1  AATGAACAAAATTAAAAAAAATAAAGAGATAGAGAGGTTAAAGAATACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAAATTAAAAAAAATAAAGAGATAGAGAGGTTAAAGAATACAC  300

seq1  TTCTGGGACAGACGCCTCTACAGTTTAGAGAAACTGAAACCAAGACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGACAGACGCCTCTACAGTTTAGAGAAACTGAAACCAAGACAAGA  350

seq1  GAAATCCCACGGAAACGGCAAATGAAAGATGACCACAGTGGCTAAGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCCACGGAAACGGCAAATGAAAGATGACCACAGTGGCTAAGCTGG  400

seq1  CATTAGACAATATATGCACTCAGCTGAAATCTGTCAGAAGAGACGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACAATATATGCACTCAGCTGAAATCTGTCAGAAGAGACGGAGGA  450

seq1  GCTCATTATATAATGATGAAGAGATCAATTCATCCAGAGGATACTGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTATATAATGATGAAGAGATCAATTCATCCAGAGGATACTGCTAT  500

seq1  TATCAGTAGGTATGCACCCAACATCAGCTCACCAAAATGTATAAAGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTAGGTATGCACCCAACATCAGCTCACCAAAATGTATAAAGCAAA  550

seq1  TATTAACAGAGCTACAGGGAGAAATGGATAGCAATACAATCAGAGTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAGAGCTACAGGGAGAAATGGATAGCAATACAATCAGAGTGGGG  600

seq1  AACTTCGGTAGCTCACTCCCACCAAAGGCTAGATCATCCGGACAGGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCGGTAGCTCACTCCCACCAAAGGCTAGATCATCCGGACAGGAAAT  650

seq1  CAATAAGGACACAGCAGAGTGGACTGAAGTAAGGGTTCGTGCGAGCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGGACACAGCAGAGTGGACTGAAGTAAGGGTTCGTGCGAGCTCTG  700

seq1  CGCCCCACAGCTGCAGCGCACGATCCCCTCAAGCACACAGATGAGCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCACAGCTGCAGCGCACGATCCCCTCAAGCACACAGATGAGCATCC  750

seq1  AGGAAAGATCTCTACTGGGCACAGACAAATACTGACTTAAGAAGGCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATCTCTACTGGGCACAGACAAATACTGACTTAAGAAGGCTGCA  800

seq1  CGCATCTGTAGTATCCTTTTCAACCAC  827
      |||||||||||||||||||||||||||
seq2  CGCATCTGTAGTATCCTTTTCAACCAC  827


seq1: chr13_71623846_71624394
seq2: B6Ng01-331K13.g_79_627 (reverse)

seq1  GGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACATAAT  50

seq1  AAAAAATATTTAAATTAAAAAAATCTAAAAAAAAAAAAACAAAAAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTTAAATTAAAAAAATCTAAAAAAAAAAAAACAAAAAAACCA  100

seq1  AAAACCAAAAAACAAAACATGGAAGTGGGTGGGATGAGACCAAAGCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAAACAAAACATGGAAGTGGGTGGGATGAGACCAAAGCCTGC  150

seq1  TAACATTTGAGATCTCGGAACCTGCTCTAGCCACTTAAGAGGTGGAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGAGATCTCGGAACCTGCTCTAGCCACTTAAGAGGTGGAGTTG  200

seq1  GTTTGATCTGTAAAGTGAGCGATTATTGAGGACTAAGAAGGAGAGGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATCTGTAAAGTGAGCGATTATTGAGGACTAAGAAGGAGAGGTGTG  250

seq1  ACCATGGAGACGGGCAAGCCCGGAAAAGTACAGCCTGGAAGTCAACCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAGACGGGCAAGCCCGGAAAAGTACAGCCTGGAAGTCAACCCTG  300

seq1  TCTATGACCACATTCACCAGCAGGGTGTTGGACAGCTTCCTGGGTAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACCACATTCACCAGCAGGGTGTTGGACAGCTTCCTGGGTAGACT  350

seq1  GGAGTCTGCTGTTGCTGTTTTGTCTTTCAATTCTGTTCCTTTTGCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGCTGTTGCTGTTTTGTCTTTCAATTCTGTTCCTTTTGCAGGAG  400

seq1  AACTGAATTCAGCCATAGTGGCATGCTCTGGCAATTAATAGAATCAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATTCAGCCATAGTGGCATGCTCTGGCAATTAATAGAATCAGAAT  450

seq1  TATAGGAAGGATATTTCCATCTATTTTTCCCTCCGTTTTTCTATTAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAAGGATATTTCCATCTATTTTTCCCTCCGTTTTTCTATTAACAA  500

seq1  CTAAATAAGTAATCAGTACTGAGTTAGAGCTTCCTCATTTCAACATATT  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAGTAATCAGTACTGAGTTAGAGCTTCCTCATTTCAACATATT  549


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