BAC Information

Click to search

BAC

Clone NameB6Ng01-332G08
Chromosome13 (Build37)
Map Location 111,248,565 - 111,415,802
singlet/doubletdoublet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332G08.bB6Ng01-332G08.g
ACCGA118511GA118512
length1,0531,193
definitionB6Ng01-332G08.b B6Ng01-332G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,414,756 - 111,415,802)(111,248,565 - 111,249,783)
sequence
gaattcatacagtgcggtcttggtatctctatactgtgtttttctgtaat
cctggaacctagaatcatggtgtgcagcctttgtaggctgacatcttttg
ctttgcaatatcatccatgctgtggtagaattaccctttgttatgagcaa
tgctctactgttaggttaatatacatttatctattcaccgattgcaggat
attctaattgtgtccatatattgttaactatgactaaaactgttacaagc
acccatgggaaggcttttggtggctacccattttaaaatcatttggataa
atacaaaaatgtacaactgcatctctggcatgggtacagtccattttgta
ggaacctgcccaattgtatctgaagttgctgtcaccaattttcagcctcg
acaacagcaaacaggattttcagtgagttcgattatttttttgagaatgg
tatttggtaaatacaaaaacacaaaagagataagttgtggtgtggaatta
attcagagctttctagctgttgttttgggctgtctttgctgtacacagtg
agggtagtgggggtgagctgaactaggtagtgtctccacttggtacttag
gagcactataaactagtcagtgtcttcacttggtacttaagagcatataa
gaaaagcaaatgtacttggggaggctgagattcatcttgtctaattaaag
aataggatgatggtgccaattcctcaaaatcaagcaaatatgaaaggtaa
aactcatttacaaagactagctagcatcttcatgaccttacggtgagtac
cccatatgagcttctaactccaatgatattgactatgataattttcacca
gttactgtttgtaattgtaagtggattctttattataatgggcaaaattc
tgtttccaaaacaagaaaatgactccagtctttcaaagtgagtggaaatt
tcccagtcatttctacctagtagaactcagagagggataggaattaccat
gggactcacagatcacagattctagcatcctctgaaggatgcagcttctg
tat

gaattcactcatggactacttttagggtgaccttttctccttccagaaga
ttctcaagatcaaatcactcacaaatggcatggctatctcctctgtgtct
ctaaaatcttgcccatagcaccatatctccaaatgatctctaactttccc
tatgtcaggtctgcaccaactttttatttactaagtagtactcatgttag
gtacacagctcacagggcatgagataagggtttgtggaatagaagcgaaa
cttccccacttcaattaataaaagagaaaagcaagattagacggtacact
ctgattaaaaagttcggaatttttggagaaacagacaggctgtttcaggg
gtatcattagttgtgtgctctgaaacttaacctttggcgatactgctaca
gcactaactcacctgagagcactctgtctggatccaaatacctttttttt
tttttaaccaggaaatgtcagtgttgtggctgttaggatagaaagcccag
cttcttcagatctcctgctgggcctaagtaggtcaagtgtctcattgtgt
gaatcagtggtgctgcctgaaatagaacgcagacagatacatcattttgt
tcaagcactgcctagataaacgcagttttgatgcgatgcaagcagagctt
gaaatcaacagcaatgctaatgaaaactatttggggcaaggatttatgag
gatgttaggagctgggcttacacaagtgcccttcaaaggaagtaatacat
tagcgatgataagaacaaatcatttgactagatgtgtttgtgctatgaaa
tatatctgatctataaatttgatttaattcaccttttacaaagatacatt
ctcctgcatattttcttgtcagtggtcttatgagaagcttttaaactcta
tgatcaaggagtgatatgaaacatattcaattttcaaggaatgatccaaa
gtgggcctcccatggttcggtgcctgcctgtctctctgatgattatccct
catgtcctatcatgactttgacagcagctctagaacacttttatcatatc
acagctttcttctctaggactgctaatgtttacttcccacattgtcagct
ttccacccacccttctgtccaaataatgccacgaagttcccagtgttcta
ctttactgggaatgccttcgagtcgaactggccaggagaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111414756_111415802
seq2: B6Ng01-332G08.b_46_1098 (reverse)

seq1  ATACAGAAGCTGCATCC-TCAGA-GATGCTAGAATCTGTGATCTGTGAGT  48
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  ATACAGAAGCTGCATCCTTCAGAGGATGCTAGAATCTGTGATCTGTGAGT  50

seq1  -CCATGGT-ATTTCTAT-CCTCTCTGAGTTCTACTAGGTAGAAATGACTG  95
       ||||||| ||| |||| ||||||||||||||||||||||||||||||||
seq2  CCCATGGTAATTCCTATCCCTCTCTGAGTTCTACTAGGTAGAAATGACTG  100

seq1  GGAAA-TTCCACTCACTTTGAAAAGACTGGAGTCATTTTCTTGTTTTGGA  144
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAAATTTCCACTCACTTTG-AAAGACTGGAGTCATTTTCTTGTTTTGGA  149

seq1  AACAGAATTTTG-CCATTATAATAAAGAATCCACTTACAATTACAAACAG  193
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTTTGCCCATTATAATAAAGAATCCACTTACAATTACAAACAG  199

seq1  TAACTGGTGAAAATTATCATAGTCAATATCATTGGAGTTAGAAGCTCATA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGTGAAAATTATCATAGTCAATATCATTGGAGTTAGAAGCTCATA  249

seq1  TGGGGTACTCACCGTAAGGTCATGAAGATGCTAGCTAGTCTTTGTAAATG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACTCACCGTAAGGTCATGAAGATGCTAGCTAGTCTTTGTAAATG  299

seq1  AGTTTTACCTTTCATATTTGCTTGATTTTGAGGAATTGGCACCATCATCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACCTTTCATATTTGCTTGATTTTGAGGAATTGGCACCATCATCC  349

seq1  TATTCTTTAATTAGACAAGATGAATCTCAGCCTCCCCAAGTACATTTGCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTAATTAGACAAGATGAATCTCAGCCTCCCCAAGTACATTTGCT  399

seq1  TTTCTTATATGCTCTTAAGTACCAAGTGAAGACACTGACTAGTTTATAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATATGCTCTTAAGTACCAAGTGAAGACACTGACTAGTTTATAGT  449

seq1  GCTCCTAAGTACCAAGTGGAGACACTACCTAGTTCAGCTCACCCCCACTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAAGTACCAAGTGGAGACACTACCTAGTTCAGCTCACCCCCACTA  499

seq1  CCCTCACTGTGTACAGCAAAGACAGCCCAAAACAACAGCTAGAAAGCTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTGTGTACAGCAAAGACAGCCCAAAACAACAGCTAGAAAGCTCT  549

seq1  GAATTAATTCCACACCACAACTTATCTCTTTTGTGTTTTTGTATTTACCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATTCCACACCACAACTTATCTCTTTTGTGTTTTTGTATTTACCA  599

seq1  AATACCATTCTCAAAAAAATAATCGAACTCACTGAAAATCCTGTTTGCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATTCTCAAAAAAATAATCGAACTCACTGAAAATCCTGTTTGCTG  649

seq1  TTGTCGAGGCTGAAAATTGGTGACAGCAACTTCAGATACAATTGGGCAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGAGGCTGAAAATTGGTGACAGCAACTTCAGATACAATTGGGCAGG  699

seq1  TTCCTACAAAATGGACTGTACCCATGCCAGAGATGCAGTTGTACATTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAAAATGGACTGTACCCATGCCAGAGATGCAGTTGTACATTTTT  749

seq1  GTATTTATCCAAATGATTTTAAAATGGGTAGCCACCAAAAGCCTTCCCAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATCCAAATGATTTTAAAATGGGTAGCCACCAAAAGCCTTCCCAT  799

seq1  GGGTGCTTGTAACAGTTTTAGTCATAGTTAACAATATATGGACACAATTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTGTAACAGTTTTAGTCATAGTTAACAATATATGGACACAATTA  849

seq1  GAATATCCTGCAATCGGTGAATAGATAAATGTATATTAACCTAACAGTAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCCTGCAATCGGTGAATAGATAAATGTATATTAACCTAACAGTAG  899

seq1  AGCATTGCTCATAACAAAGGGTAATTCTACCACAGCATGGATGATATTGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGCTCATAACAAAGGGTAATTCTACCACAGCATGGATGATATTGC  949

seq1  AAAGCAAAAGATGTCAGCCTACAAAGGCTGCACACCATGATTCTAGGTTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAAGATGTCAGCCTACAAAGGCTGCACACCATGATTCTAGGTTC  999

seq1  CAGGATTACAGAAAAACACAGTATAGAGATACCAAGACCGCACTGTATGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTACAGAAAAACACAGTATAGAGATACCAAGACCGCACTGTATGA  1049

seq1  ATTC  1047
      ||||
seq2  ATTC  1053


seq1: chr13_111248565_111249783
seq2: B6Ng01-332G08.g_66_1258

seq1  GAATTCACTCATGGACTACTTTTAGGGTGACCTTTTCTCCTTCCAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATGGACTACTTTTAGGGTGACCTTTTCTCCTTCCAGAAGA  50

seq1  TTCTCAAGATCAAATCACTCACAAATGGCATGGCTATCTCCTCTGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGATCAAATCACTCACAAATGGCATGGCTATCTCCTCTGTGTCT  100

seq1  CTAAAATCTTGCCCATAGCACCATATCTCCAAATGATCTCTAACTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCTTGCCCATAGCACCATATCTCCAAATGATCTCTAACTTTCCC  150

seq1  TATGTCAGGTCTGCACCAACTTTTTATTTACTAAGTAGTACTCATGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAGGTCTGCACCAACTTTTTATTTACTAAGTAGTACTCATGTTAG  200

seq1  GTACACAGCTCACAGGGCATGAGATAAGGGTTTGTGGAATAGAAGCGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGCTCACAGGGCATGAGATAAGGGTTTGTGGAATAGAAGCGAAA  250

seq1  CTTCCCCACTTCAATTAATAAAAGAGAAAAGCAAGATTAGACGGTACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCACTTCAATTAATAAAAGAGAAAAGCAAGATTAGACGGTACACT  300

seq1  CTGATTAAAAAGTTCGGAATTTTTGGAGAAACAGACAGGCTGTTTCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAAAAAGTTCGGAATTTTTGGAGAAACAGACAGGCTGTTTCAGGG  350

seq1  GTATCATTAGTTGTGTGCTCTGAAACTTAACCTTTGGCGATACTGCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTAGTTGTGTGCTCTGAAACTTAACCTTTGGCGATACTGCTACA  400

seq1  GCACTAACTCACCTGAGAGCACTCTGTCTGGATCCAAATACC-TTTTTTT  449
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCACTAACTCACCTGAGAGCACTCTGTCTGGATCCAAATACCTTTTTTTT  450

seq1  TTTTTAACCAGGAAATGTCAGTGTTGTGGCTGTTAGGATAGAAAGCCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACCAGGAAATGTCAGTGTTGTGGCTGTTAGGATAGAAAGCCCAG  500

seq1  CTTCTTCAGATCTCCTGCTGGGCCTAAGTAGGTCAAGTGTCTCATTGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAGATCTCCTGCTGGGCCTAAGTAGGTCAAGTGTCTCATTGTGT  550

seq1  GAATCAGTGGTGCTGCCTGAAATAGAACGCAGACAGATACATCATTTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGTGGTGCTGCCTGAAATAGAACGCAGACAGATACATCATTTTGT  600

seq1  TCAAGCACTGCCTAGATAAACGCAGTTTTGATGCGATGCAAGCAGAGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACTGCCTAGATAAACGCAGTTTTGATGCGATGCAAGCAGAGCTT  650

seq1  GAAATCAACAGCAATGCTAATGAAAACTATTTGGGGCAAGGATTTATGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAACAGCAATGCTAATGAAAACTATTTGGGGCAAGGATTTATGAG  700

seq1  GATGTTAGGAGCTGGGCTTACACAAGTGCCCTTCAAAGGAAGTAATACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGGAGCTGGGCTTACACAAGTGCCCTTCAAAGGAAGTAATACAT  750

seq1  TAGCGATGATAAGAACAAATCATTTGACTAGATGTGTTTGTGCTATGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGATGATAAGAACAAATCATTTGACTAGATGTGTTTGTGCTATGAAA  800

seq1  TATATCTGATCTATAAATTTGATTTAATTCACCTTTTACAAAGATACATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGATCTATAAATTTGATTTAATTCACCTTTTACAAAGATACATT  850

seq1  CTCCTGCATATTTTCTTGTCAGTGGTCTTATGAGAAGCTTTTAAAACTCT  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCCTGCATATTTTCTTGTCAGTGGTCTTATGAGAAGCTTTT-AAACTCT  899

seq1  ATGATCAAGGAGTGATATGAAACATATTCAATTTTCAAGGAATGATCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAGGAGTGATATGAAACATATTCAATTTTCAAGGAATGATCCAA  949

seq1  AGTGGGCCTCCCATGGTTCGGTGCCTGCCTGTCTTCCTCTGATTGATTTA  999
      ||||||||||||||||||||||||||||||||||  |||||| ||| |||
seq2  AGTGGGCCTCCCATGGTTCGGTGCCTGCCTGTCT--CTCTGA-TGA-TTA  995

seq1  TCCCTCATGTCCTATCATGACCTTTGGACAGCAGCTCTAAGGAACACTTT  1049
      |||||||||||||||||||||  || |||||||||||||  |||||||||
seq2  TCCCTCATGTCCTATCATGAC--TTTGACAGCAGCTCTA--GAACACTTT  1041

seq1  TATCCATATCACAGGCTTTCTTTCCTCTAGGACCTGGCTAATGTTATCTT  1099
      ||| ||||||||| ||||||||  |||||||||   |||||||||  |||
seq2  TAT-CATATCACA-GCTTTCTT--CTCTAGGAC--TGCTAATGTTTACTT  1085

seq1  CCCAAACATTTGTCAGCTTT-CACCCACCC-TCTGTCAAAATAATGCCCC  1147
      |||| |   ||||||||||| ||||||||| |||||| ||||||||  ||
seq2  CCCACA---TTGTCAGCTTTCCACCCACCCTTCTGTCCAAATAATG--CC  1130

seq1  ACGAAG-TCCCACTGTTCCTACATTTCTAACTCTGTGGATGCTTCTGATG  1196
      |||||| ||||| |||| |||| ||       ||| | |||| |  || |
seq2  ACGAAGTTCCCAGTGTT-CTACTTT------ACTGGGAATGCCTTCGA-G  1172

seq1  TCAGGACTGGCCAGGGAGAAGAG  1219
      || | |||||||| |||||||||
seq2  TC-GAACTGGCCA-GGAGAAGAG  1193


| Home | SequenceCutter | Blast | Download |