BAC Information

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BAC

Clone NameB6Ng01-332H13
Chromosome13 (Build37)
Map Location 6,417,207 - 6,481,329
singlet/doubletdoublet
Overlap genenone
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
Downstream genePitrm1, Pfkp, LOC100039532, LOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332H13.bB6Ng01-332H13.g
ACCGA118563GA118564
length1,092541
definitionB6Ng01-332H13.b B6Ng01-332H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,417,207 - 6,418,307)(6,480,789 - 6,481,329)
sequence
gaattccattttgtgttggtcatctactgctgggcatggggcccacactt
aagtttgttgatatatacagtgagacttccaggaactattcttctgcagg
ctgcttttgaacctttgaattgaaattctccaataacaacacaaagtgaa
ttattctttgcaacagtccaaactcacctagctaccaactcttgtttttg
atacacaaacccctaaattggaagttatagcaactacttaaatctatgaa
aaaataagcataaacccactgagaggtaggtgatttggatgtccttccta
cactgaagaaaagtcatacttttctactttgaagaacatgtcacgtaaca
caagaaaaaaaaagattctcctcggttttgacattttatgaaagaagata
tattttgatgatgttctcagttgttcatatgattgagccctgtgagacta
ctgtaatttttctgtaagatatataacaagaaagctcttcacgaatactc
tctcttttgagggaaaagaaaacagcagggttgaagcagacaactatgat
gaaaactcaccaagcagaagcaccatgttggcaattggcaggtatattat
gcattcatgttttgagtagccatgggatgttcttatagccaaacttagaa
agataaatcagaaggcagggtgccattgctggacctactttgcagtgctg
gaagggctcctactcaatccactaaggatgctgtcacagctgagtgatct
gacagagacataatttataagagatttgtacaaatccagttgagaggaaa
agtaagagttagaaatactactccgtacaccatctacttatccctgaagc
acatcgaccacctgcagactctactgctaatgtgcaatttcatcagaaag
tatgaaaagttaagaaaattgaactaaaatgtttcacttcgaacttgaat
taagttcagatacttaaatgaaagctcagacttcaaacttgccagtggtt
gaagatgcagttgggatgaagtccaacatcatatcagctatagtagtact
acggtgtttttgatctctgttgtgtttgtttccttttttctt

gaattcataggtgtggtatccacagatacatagaatcagttgtgagagcg
aaaattcacgtcacatcatgttaaaagaagaaatgtcttaattcatgtta
tagatgaaaaagaaataagaaaggactcatgggaaaaaatgatggtgacc
tgtctctggttggcaacattgcaagcgacctttgctttccttaatctctt
tcagtttccccattttattctgttgaatagatattttataatctgaaaac
atctatatttttctcagacgatgagaaatatggagatgggttaagcacaa
accctgtttggttgaattttaattatgctctgacatattgcttgtttgaa
tcacatgtgtgagagtatgtgagaggttataggctgtaaattcatgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgagcccatgcatgcatgtgtgaa
ggtcagtgatagatgtcagatgcatgtatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6417207_6418307
seq2: B6Ng01-332H13.b_50_1141

seq1  GAATTCCATTTTGTGTTGGTCATCTACTGCTGGGCATGGGGCCCACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTGTGTTGGTCATCTACTGCTGGGCATGGGGCCCACACTT  50

seq1  AAGTTTGTTGATATATACAGTGAGACTTCCAGGAACTATTCTTCTGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTTGATATATACAGTGAGACTTCCAGGAACTATTCTTCTGCAGG  100

seq1  CTGCTTTTGAACCTTTGAATTGAAATTCTCCAATAACAACACAAAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTGAACCTTTGAATTGAAATTCTCCAATAACAACACAAAGTGAA  150

seq1  TTATTCTTTGCAACAGTCCAAACTCACCTAGCTACCAACTCTTGTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTGCAACAGTCCAAACTCACCTAGCTACCAACTCTTGTTTTTG  200

seq1  ATACACAAACCCCTAAATTGGAAGTTATAGCAACTACTTAAATCTATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAACCCCTAAATTGGAAGTTATAGCAACTACTTAAATCTATGAA  250

seq1  AAAATAAGCATAAACCCACTGAGAGGTAGGTGATTTGGATGTCCTTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGCATAAACCCACTGAGAGGTAGGTGATTTGGATGTCCTTCCTA  300

seq1  CACTGAAGAAAAGTCATACTTTTCTACTTTGAAGAACATGTCACGTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGAAAAGTCATACTTTTCTACTTTGAAGAACATGTCACGTAACA  350

seq1  CAAGAAAAAAAAAGATTCTCCTCGGTTTTGACATTTTATGAAAGAAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAAAAAAGATTCTCCTCGGTTTTGACATTTTATGAAAGAAGATA  400

seq1  TATTTTGATGATGTTCTCAGTTGTTCATATGATTGAGCCCTGTGAGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATGATGTTCTCAGTTGTTCATATGATTGAGCCCTGTGAGACTA  450

seq1  CTGTAATTTTTCTGTAAGATATATAACAAGAAAGCTCTTCACGAATACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTTTTCTGTAAGATATATAACAAGAAAGCTCTTCACGAATACTC  500

seq1  TCTCTTTTGAGGGAAAAGAAAACAGCAGGGTTGAAGCAGACAACTATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGAGGGAAAAGAAAACAGCAGGGTTGAAGCAGACAACTATGAT  550

seq1  GAAAACTCACCAAGCAGAAGCACCATGTTGGCAATTGGCAGGTATATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCACCAAGCAGAAGCACCATGTTGGCAATTGGCAGGTATATTAT  600

seq1  GCATTCATGTTTTGAGTAGCCATGGGATGTTCTTATAGCCAAACTTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATGTTTTGAGTAGCCATGGGATGTTCTTATAGCCAAACTTAGAA  650

seq1  AGATAAATCAGAAGGCAGGGTGCCATTGCTGGACCTACTTTGCAGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATCAGAAGGCAGGGTGCCATTGCTGGACCTACTTTGCAGTGCTG  700

seq1  GAAGGGCTCCTACTCAATCCACTAAGGATGCTGTCACAGCTGAGTGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTCCTACTCAATCCACTAAGGATGCTGTCACAGCTGAGTGATCT  750

seq1  GACAGAGACATAATTTATAAGAGATTTGTACAAATCCAGTTGAGAGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACATAATTTATAAGAGATTTGTACAAATCCAGTTGAGAGGAAA  800

seq1  AGTAAGAGTTAGAAATACTACTCCGTACACCATCTACTTATCCCTGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAGTTAGAAATACTACTCCGTACACCATCTACTTATCCCTGAAGC  850

seq1  ACATCGACCACCTGCAGACTCTACTGCTAATGTGCAATTTCATCAGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGACCACCTGCAGACTCTACTGCTAATGTGCAATTTCATCAGAAAG  900

seq1  TATGAAAAGTTAAGAAAATTGAACTAAAATGTTTCACTTCGAACTTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAGTTAAGAAAATTGAACTAAAATGTTTCACTTCGAACTTGAAT  950

seq1  TAAGTTCAGGATACTTAAATGAAAGCTCAGACTTCAAACTTTGCCAGTGG  1000
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  TAAGTTCA-GATACTTAAATGAAAGCTCAGACTTCAAAC-TTGCCAGTGG  998

seq1  TTGAAGATGCAGTTTGGAATGAAGTCCAACAATCATATCAGCTTATAGTA  1050
      |||||||||||| |||| |||||||||||| ||||||||||| |||||| 
seq2  TTGAAGATGCAG-TTGGGATGAAGTCCAAC-ATCATATCAGC-TATAGT-  1044

seq1  AGTACTAAGGGTGTTTTTGAATCTCTGTTGTGTTTTGTTTCCTTTTTTCT  1100
      |||||| | |||||||||| |||||||||||| |||||||||||||||||
seq2  AGTACT-ACGGTGTTTTTG-ATCTCTGTTGTG-TTTGTTTCCTTTTTTCT  1091

seq1  T  1101
      |
seq2  T  1092


seq1: chr13_6480789_6481329
seq2: B6Ng01-332H13.g_64_604 (reverse)

seq1  ATATGTATATATATATATATATATATATATATATATATATATATATATAT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATATATATATATATACATGCATCTGACATCTATCACTGACCTTCACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATACATGCATCTGACATCTATCACTGACCTTCACACAT  100

seq1  GCATGCATGGGCTCACACACACACACACACACACACACACACACACATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGGGCTCACACACACACACACACACACACACACACACACATGA  150

seq1  ATTTACAGCCTATAACCTCTCACATACTCTCACACATGTGATTCAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGCCTATAACCTCTCACATACTCTCACACATGTGATTCAAACAA  200

seq1  GCAATATGTCAGAGCATAATTAAAATTCAACCAAACAGGGTTTGTGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGTCAGAGCATAATTAAAATTCAACCAAACAGGGTTTGTGCTTA  250

seq1  ACCCATCTCCATATTTCTCATCGTCTGAGAAAAATATAGATGTTTTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTCCATATTTCTCATCGTCTGAGAAAAATATAGATGTTTTCAGA  300

seq1  TTATAAAATATCTATTCAACAGAATAAAATGGGGAAACTGAAAGAGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATATCTATTCAACAGAATAAAATGGGGAAACTGAAAGAGATTA  350

seq1  AGGAAAGCAAAGGTCGCTTGCAATGTTGCCAACCAGAGACAGGTCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCAAAGGTCGCTTGCAATGTTGCCAACCAGAGACAGGTCACCAT  400

seq1  CATTTTTTCCCATGAGTCCTTTCTTATTTCTTTTTCATCTATAACATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCCCATGAGTCCTTTCTTATTTCTTTTTCATCTATAACATGAA  450

seq1  TTAAGACATTTCTTCTTTTAACATGATGTGACGTGAATTTTCGCTCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACATTTCTTCTTTTAACATGATGTGACGTGAATTTTCGCTCTCAC  500

seq1  AACTGATTCTATGTATCTGTGGATACCACACCTATGAATTC  541
      |||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTCTATGTATCTGTGGATACCACACCTATGAATTC  541


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