BAC Information

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BAC

Clone NameB6Ng01-332M13
Chromosome13 (Build37)
Map Location 12,912,531 - 13,078,151
singlet/doubletdoublet
Overlap geneLOC100039999, LOC100039754
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
Downstream genePrl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332M13.bB6Ng01-332M13.g
ACCGA118788GA118789
length1,1821,180
definitionB6Ng01-332M13.b B6Ng01-332M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,912,531 - 12,913,209)(13,076,968 - 13,078,151)
sequence
gaattctttgtttagctctgagcgccattttttaatggggttatttgttt
ttctggagttcaccttctttagttcttcatatatattggatattagtccc
ctatctgatttagaataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttgcagaagctttgcaatttta
tgagatcccattagtccatcttatagcacaagccattgctgttctcttca
ggaattttccccctgtacccatatctttggggcttttccctactttctcc
tctataaggtccagtgtctctggttttatgtggagttccttaattcactt
agatttgaccttagtacaaggagataggaatggatcaatttgcattcttc
tacatagtaattgccagttgtgccatcaccatttgttgaaaatgctgtct
tttttccactggatggtttttgctcccttgtcaaagaccaagtgacgata
ggtgtgtgggttcatttctgagtcttcaattctattccattggtctactt
gtctgtcactataccagtaccatgcagtttttatcacaattgctctgtag
tacagctttaggtcaggcatggtgattccaccggaggttcttttatcctt
gagcagagtttttgctatcctaggttttttgttattccagatgaatttgc
agattgccctttctaattcattaaagaattgtgttggaattttgatgggg
attgcattgaacctgtagattgctttttagcaagatagccatttttacta
tattgatcctgccaatccatgagcatggtagatctttccatcttctgaga
tctttaatttctttcttcagagacttgaagttcttatcatacagatcttt
cacttccttagttagagtcatgccaaggtattttatattatttgtgacta
ttgagaaggtgttgtttccctaattactttcttcagcctgtgtatccttt
ggagttttttttcagactagtgttattaaaggtaaatggagttttaattt
tatatattctagatcatgttcttggtttgtaattatggttacgggaaatt
gttcatgtttgagaagtgtaagttgatgatgaaaccatatgatcattttc
aaagaatgccaatttgaagggttatttccagt
gaattcaacacaaaagaaaataaaaggatcaggttctaacaaagcatgca
aataccttaatacttgttccacttctttcatagagcaagcaaatttgggt
gcagcaagggagataggagacactttctttcatacctcttcttaataaaa
taaagtagttagtattccttatcaacgtgaagtaatacaaaatgggacca
gtcttcctagtcttgccacagaaattggcagcacattacccagtgcactg
aatgttcaggcatgaaatttacaggatatattaaacttgcctcaaagttg
agaatgagcaatgtattgcagagtcagaatctctgaaaggagactttcaa
agacaaagtgtgaacttgtagaggtaaagccaaaatggcaatgcctctgc
tagttggtgggaaatactctattttgaggggaaatttttctagagttctc
tttttttattgtatcctggtctatttttattatcagagtaatatcaattc
agataaatgagtctgttagtattccctttctagaaaattttaaatattta
aattaaatgttgaggaagtcaaataatttgtaatttttaattattaggga
atagaaacttacaatgcataaaatatttatcttatcaacttatcctgtaa
aaattaacgggtttcttgacttcctattttaacctaatctaaccatacat
ttataaccccatttcttagttgacaaaatcaggatattttgagggaaaaa
aatcttctttcctaacacatgctgtctttatctcactgtcctgcatttga
tctggttcttcacttaccacacatgtgtctaatcttagaataaaggtaac
cacacagaaacacgggatactttcaaccacttagtgcattcgggtgtacc
acttccactcatatataatatttttctgcaaatttgcatctgcaccattt
actgttttatagacgctattggctgcctgtgtctgtgagatagtaggtag
taataaaattataatgaaagttctcaagattgatttaacatcaatagccc
tggacaataccctaagtatttggggcagaatgtacaattgaagattattc
attactccactccagcctcaaaattacatttgttcggtcaggagacaacg
aagtatgtcttaaacaaacctttgttctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12912531_12913209
seq2: B6Ng01-332M13.b_554_1227

seq1  GGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTTCTGAGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCA  50

seq1  CTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTT  100

seq1  TAGGTCAGGCATGGTGATTCCACCGGAGGTTCTTTTATCCTTGAGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGGCATGGTGATTCCACCGGAGGTTCTTTTATCCTTGAGCAGAG  150

seq1  TTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAGATTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAGATTGCC  200

seq1  CTTTCTAATTCATTAAAGAATTGTGTTGGAATTTTGATGGGGATTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAATTCATTAAAGAATTGTGTTGGAATTTTGATGGGGATTGCATT  250

seq1  GAACCTGTAGATTGCTTTTTAGCAAGATAGCCATTTTTACTATATTGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTAGATTGCTTTTTAGCAAGATAGCCATTTTTACTATATTGATC  300

seq1  CTGCCAATCCATGAGCATGGTAGATCTTTCCATCTTCTGAGATCTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAATCCATGAGCATGGTAGATCTTTCCATCTTCTGAGATCTTTAAT  350

seq1  TTCTTTCTTCAGAGACTTGAAGTTCTTATCATACAGATCTTTCACTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCAGAGACTTGAAGTTCTTATCATACAGATCTTTCACTTCCT  400

seq1  TAGTTAGAGTCATGCCAAGGTATTTTATATTATTTGTGACTATTGAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGTTAGAGTCATGCCAAGGTATTTTATATTATTTGTGACTATTGAGAA-  449

seq1  GGTGTTGTTTCCCTAATTACTTTC-TCAGCCTGTGTATCCTTTGAGTTTT  499
      |||||||||||||||||||||||| ||||||||||||||||||| |  ||
seq2  GGTGTTGTTTCCCTAATTACTTTCTTCAGCCTGTGTATCCTTTG-GAGTT  498

seq1  TTTTTTCAGACTAGTGTTATTAAAGGTAAATGAGTTTTTAATTTTATATA  549
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  TTTTTTCAGACTAGTGTTATTAAAGGTAAATGGAGTTTTAATTTTATATA  548

seq1  TTCTAGATCATGTTCTTGGTTTGTAAATTATTGTTACGGGAAAATTTGTT  599
      |||||||||||||||||||||||| |||||| |||||||||||  |||||
seq2  TTCTAGATCATGTTCTTGGTTTGT-AATTATGGTTACGGGAAA--TTGTT  595

seq1  CATGTTTGAGA--TGTAAGTTGATGATGAAACCAATATTGATCATTTTCA  647
      |||||||||||  |||||||||||||||||||| ||| ||||||||||||
seq2  CATGTTTGAGAAGTGTAAGTTGATGATGAAACC-ATA-TGATCATTTTCA  643

seq1  AAG-ATG-CAATTTGAAGGGGTTTTATTTTCAGT  679
      ||| ||| ||||||||||||   |||||| ||||
seq2  AAGAATGCCAATTTGAAGGG---TTATTTCCAGT  674

seq1: chr13_13076968_13078151
seq2: B6Ng01-332M13.g_66_1245 (reverse)

seq1  CTAG-ACAAAGGTGTTTGTTTTAGACATACATCTGTTGGTCCTCCTGA-C  48
      |||| ||||||  |||||||| |||||||| || ||||   ||||||| |
seq2  CTAGAACAAAG--GTTTGTTTAAGACATACTTC-GTTG--TCTCCTGACC  45

seq1  GAACAAAATTGT-ATTTTGA-GCT-GAGTGGAGTAATGAAT-ATCTTCCA  94
      |||||||  ||| ||||||| ||| |||||||||||||||| |||||| |
seq2  GAACAAA--TGTAATTTTGAGGCTGGAGTGGAGTAATGAATAATCTTCAA  93

seq1  ATGTACA-TCTGCCCCCAAATACTTAGGGGTATTGTCCAGGGCTATTGAT  143
       |||||| |||| ||||||||||||| |||||||||||||||||||||||
seq2  TTGTACATTCTG-CCCCAAATACTTA-GGGTATTGTCCAGGGCTATTGAT  141

seq1  GTTTAAATCAATCTTTGAGAACCTTTCATTAT-ATTTTATTACTACCTAC  192
      | ||||||||||| ||||||| |||||||||| |||||||||||||||||
seq2  G-TTAAATCAATC-TTGAGAA-CTTTCATTATAATTTTATTACTACCTAC  188

seq1  TATCTCACAGACACAGGCAGCCAATAGCGTCTATAAAACAGTAAATGGTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCACAGACACAGGCAGCCAATAGCGTCTATAAAACAGTAAATGGTG  238

seq1  CAGATGCAAATTTGCAGAAAAATATTATATATGAGTGGAAGTGGTACACC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAAATTTGCAGAAAAATATTATATATGAGTGGAAGTGGTACACC  288

seq1  CGAATGCACTAAGTGGTTGAAAGTATCCCGTGTTTCTGTGTGGTTACCTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGCACTAAGTGGTTGAAAGTATCCCGTGTTTCTGTGTGGTTACCTT  338

seq1  TATTCTAAGATTAGACACATGTGTGGTAAGTGAAGAACCAGATCAAATGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAGATTAGACACATGTGTGGTAAGTGAAGAACCAGATCAAATGC  388

seq1  AGGACAGTGAGATAAAGACAGCATGTGTTAGGAAAGAAGATTTTTTTCCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTGAGATAAAGACAGCATGTGTTAGGAAAGAAGATTTTTTTCCC  438

seq1  TCAAAATATCCTGATTTTGTCAACTAAGAAATGGGGTTATAAATGTATGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATCCTGATTTTGTCAACTAAGAAATGGGGTTATAAATGTATGG  488

seq1  TTAGATTAGGTTAAAATAGGAAGTCAAGAAACCCGTTAATTTTTACAGGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTAGGTTAAAATAGGAAGTCAAGAAACCCGTTAATTTTTACAGGA  538

seq1  TAAGTTGATAAGATAAATATTTTATGCATTGTAAGTTTCTATTCCCTAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGATAAGATAAATATTTTATGCATTGTAAGTTTCTATTCCCTAAT  588

seq1  AATTAAAAATTACAAATTATTTGACTTCCTCAACATTTAATTTAAATATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAATTACAAATTATTTGACTTCCTCAACATTTAATTTAAATATT  638

seq1  TAAAATTTTCTAGAAAGGGAATACTAACAGACTCATTTATCTGAATTGAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTCTAGAAAGGGAATACTAACAGACTCATTTATCTGAATTGAT  688

seq1  ATTACTCTGATAATAAAAATAGACCAGGATACAATAAAAAAAGAGAACTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTGATAATAAAAATAGACCAGGATACAATAAAAAAAGAGAACTC  738

seq1  TAGAAAAATTTCCCCTCAAAATAGAGTATTTCCCACCAACTAGCAGAGGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATTTCCCCTCAAAATAGAGTATTTCCCACCAACTAGCAGAGGC  788

seq1  ATTGCCATTTTGGCTTTACCTCTACAAGTTCACACTTTGTCTTTGAAAGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCATTTTGGCTTTACCTCTACAAGTTCACACTTTGTCTTTGAAAGT  838

seq1  CTCCTTTCAGAGATTCTGACTCTGCAATACATTGCTCATTCTCAACTTTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCAGAGATTCTGACTCTGCAATACATTGCTCATTCTCAACTTTG  888

seq1  AGGCAAGTTTAATATATCCTGTAAATTTCATGCCTGAACATTCAGTGCAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTTTAATATATCCTGTAAATTTCATGCCTGAACATTCAGTGCAC  938

seq1  TGGGTAATGTGCTGCCAATTTCTGTGGCAAGACTAGGAAGACTGGTCCCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATGTGCTGCCAATTTCTGTGGCAAGACTAGGAAGACTGGTCCCA  988

seq1  TTTTGTATTACTTCACGTTGATAAGGAATACTAACTACTTTATTTTATTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTACTTCACGTTGATAAGGAATACTAACTACTTTATTTTATTA  1038

seq1  AGAAGAGGTATGAAAGAAAGTGTCTCCTATCTCCCTTGCTGCACCCAAAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGTATGAAAGAAAGTGTCTCCTATCTCCCTTGCTGCACCCAAAT  1088

seq1  TTGCTTGCTCTATGAAAGAAGTGGAACAAGTATTAAGGTATTTGCATGCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCTCTATGAAAGAAGTGGAACAAGTATTAAGGTATTTGCATGCT  1138

seq1  TTGTTAGAACCTGATCCTTTTATTTTCTTTTGTGTTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAACCTGATCCTTTTATTTTCTTTTGTGTTGAATTC  1180