BAC Information

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BAC

Clone NameB6Ng01-333F12
Chromosome13 (Build37)
Map Location 74,936,660 - 74,937,848
singlet/doubletsinglet
Overlap geneCast
Upstream geneSlc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, LOC622204
Downstream geneEG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333F12.bB6Ng01-333F12.g
ACCGA119182GA119183
length1,1671,243
definitionB6Ng01-333F12.b B6Ng01-333F12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttagagttcttccattcaatatttaccaacacagaatgataa
agtatgaaggaaaatccatgcatacaactgttcctatttatgtttttaca
ttttaattcatgaatagaaccggttttttttctagaaaataatgattgcc
tagacaagatagatataagttttttagtaatttatttatttatgtgcatc
agtgttttatctgcatgcatgactgtgtgaggttgtcatatcctctggaa
ctggagttacagttgtgagctgccatgtgagtgctggggactgaacctgg
tctctggaagagcagtcactgctctaaaactgctgagcagatatataagt
attcttatgaggaacactgatcttcaagaagttcatatgctcatttgcct
tgacaataaggtaaaataagtctattcaatttcctctatcgatcatcttc
ttgagaaagataatatttttatgatctttggaagaggaaacaaaggatta
ttaatttcttacatactgtgagaaatggtagacactgggaaaataagaca
agggagtcaaatataaaacaaatgatagttctctgttggtttcaatcctc
actatccttattgaaaccaaactattagggctaaagatagctccacggct
aagagcactggctgctcttccagagggtattggcttggttaccagtgtcc
acatggtagcctacaatcatccctaactccagtttaaggggaaatccctc
ttctgtcctccttgagcaccagccttatacttggggcatagacatacaga
taaaacacttatacacataaaataataaaataaaaaattaaccaagtttg
aaagtaataattgtattttctagggcaaaaatcataacatggatgtgtag
gcaagttatataaaataagaagagtaatattagtggtaatagtaataatt
ttgtattgtcaacaggtatttatgctcttatttatactgaaaaatgatct
atgtatttttgatgagaaataaagtatatagcaatttgtgtgtttaggca
catatacacctagtaaatgtgagtatgttatagtcacaaagcaagctttt
aactaagactgttgttccacttagcatgtctagacacctcaggtgattgg
acttaactcatgtcagt
gaattctttgtttatctctgtactccaattcttaatagggttatttggtt
ttctggagtccaacttcttgagttctttatatatattggatattagtccc
ctatcagatttaggattggtaaagatcttttcccagtctgtttggtgcct
tttggtcttattgacagtgtcctttgccttacaaaagctttgcagttttg
tgaggtcccatttgtcgattcttgatcttagagcacaagccattggtgtt
atgttcaggaatcttttgcctgtgccctatcttccaggctcttccccact
ttctcctctataattttcagtgtctctgatttatgtgtagttctttgatc
cacttagacttgaactttgtacaaggacataagaatggatcaattcgcat
ttgtctacatgctaactgccagtttacccagcaccatttgttgaagatgc
tgtcctcttccactgaatggttttagctcctttgtcaaagatcaagtgac
cataggtgtgtgggttcatttcttcatcttaaattctgttccattgttct
acctgtctgtcactgtaccagtaccatgcagtttttatcacaattgctct
atagtaaagcttgaggtcaggcatggtgattccacgagaggttattttat
tgttgagaatagtttcgctatcctaggttttcttgttattccagatgaat
ttgcaagttgccctttctaactctgtgaagaactgagttggaactttgat
ggggattgcattgaattgtagatgcaagatagccattttttactatatta
atcctgtcaatccatcagcatgggagatctttccatctttctgagatctt
cttcgatctctttcttcaacgacgagaagtgtaacttacaatatatagat
ctttcccttacttagatacaatcccacgcaatgcatgtcatggttatatg
tgactttattggaaggggttgcacctcctaacttttcttcagacctttaa
attttatactcaatcactgagtggttatcagtgtaagagttctctgttgt
aagttggtgactataatactatcatatcatctgtaaatagtatattgtct
tcttcctttccaatttgtattcccttgatctccttcgttgcctaaatgtt
cgggcctagacttcaagtacctatatggataggaatcgggaaaagagatg
gcagccctccgcctctagagtccccgtgaaatatttagtagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_74936660_74937848
seq2: B6Ng01-333F12.b_48_1214

seq1  GAATTCTCTTAGAGTTCTTCCATTCAATATTTACCAACACAGAATGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGAGTTCTTCCATTCAATATTTACCAACACAGAATGATAA  50

seq1  AGTATGAAGGAAAATCCATGCATACAACTGTTCCTATTTATGTTTTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAGGAAAATCCATGCATACAACTGTTCCTATTTATGTTTTTACA  100

seq1  TTTTAATTCATGAATAGAACCGGTTTTTTTTCTAGAAAATAATGATTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCATGAATAGAACCGGTTTTTTTTCTAGAAAATAATGATTGCC  150

seq1  TAGACAAGATAGATATAAGTTTTTTAGTAATTTATTTATTTATGTGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGATAGATATAAGTTTTTTAGTAATTTATTTATTTATGTGCATC  200

seq1  AGTGTTTTATCTGCATGCATGACTGTGTGAGGTTGTCATATCCTCTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTATCTGCATGCATGACTGTGTGAGGTTGTCATATCCTCTGGAA  250

seq1  CTGGAGTTACAGTTGTGAGCTGCCATGTGAGTGCTGGGGACTGAACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTACAGTTGTGAGCTGCCATGTGAGTGCTGGGGACTGAACCTGG  300

seq1  TCTCTGGAAGAGCAGTCACTGCTCTAAAACTGCTGAGCAGATATATAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAAGAGCAGTCACTGCTCTAAAACTGCTGAGCAGATATATAAGT  350

seq1  ATTCTTATGAGGAACACTGATCTTCAAGAAGTTCATATGCTCATTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATGAGGAACACTGATCTTCAAGAAGTTCATATGCTCATTTGCCT  400

seq1  TGACAATAAGGTAAAATAAGTCTATTCAATTTCCTCTATCGATCATCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAAGGTAAAATAAGTCTATTCAATTTCCTCTATCGATCATCTTC  450

seq1  TTGAGAAAGATAATATTTTTATGATCTTTGGAAGAGGAAACAAAGGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGATAATATTTTTATGATCTTTGGAAGAGGAAACAAAGGATTA  500

seq1  TTAATTTCTTACATACTGTGAGAAATGGTAGACACTGGGAAAATAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTTACATACTGTGAGAAATGGTAGACACTGGGAAAATAAGACA  550

seq1  AGGGAGTCAAATATAAAACAAATGATAGTTCTCTGTTGGTTTCAATCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCAAATATAAAACAAATGATAGTTCTCTGTTGGTTTCAATCCTC  600

seq1  ACTATCCTTATTGAAACCAAACTATTAGGGCTAAAGATAGCTCCACGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTTATTGAAACCAAACTATTAGGGCTAAAGATAGCTCCACGGCT  650

seq1  AAGAGCACTGGCTGCTCTTCCAGAGGGTATTGGCTTGGTTACCAGTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGGCTGCTCTTCCAGAGGGTATTGGCTTGGTTACCAGTGTCC  700

seq1  ACATGGTAGCCTACAATCATCCCTAACTCCAGTTTAAGGGGAAATCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAGCCTACAATCATCCCTAACTCCAGTTTAAGGGGAAATCCCTC  750

seq1  TTCTGTCCTCCTTGAGCACCAGCCTTATACTTGGGGCATAGACATACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCTCCTTGAGCACCAGCCTTATACTTGGGGCATAGACATACAGA  800

seq1  TAAAACACTTATACACATAAAATAATAAAATAAAAAATTAACCAAGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACTTATACACATAAAATAATAAAATAAAAAATTAACCAAGTTTG  850

seq1  AAAGTAATAATTGTATTTTCTAGGGCAAAAATCATAACATGGATGTGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATAATTGTATTTTCTAGGGCAAAAATCATAACATGGATGTGTAG  900

seq1  GCAAGTTATATAAAATAAGAAGAGTAATATTAGTGGTAATAGTAATAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTATATAAAATAAGAAGAGTAATATTAGTGGTAATAGTAATAATT  950

seq1  TTGTATTGTCAACAAGGTATTTTATGCCTCTTATTTAATACTGAAAAAAT  1000
      ||||||||||||| ||||| |||||| ||||||||| |||||| ||||||
seq2  TTGTATTGTCAAC-AGGTA-TTTATG-CTCTTATTT-ATACTG-AAAAAT  995

seq1  GATCTATGTAATTTTTTGAATGAGAAAATAAAGTATAATAGCAATTTGGT  1050
      ||||||||||  |||||| ||||| ||||||||||| |||||||||| ||
seq2  GATCTATGTA--TTTTTG-ATGAG-AAATAAAGTAT-ATAGCAATTT-GT  1039

seq1  GTTGTTTAGGGCACATATACA-CTAGTAAATGTGAGTAAATGTTAAATAG  1099
      | |||||| |||||||||||| |||||||||||||||  |||||  ||||
seq2  G-TGTTTA-GGCACATATACACCTAGTAAATGTGAGT--ATGTT--ATAG  1083

seq1  TCACAAAGCAAGCTTTTTACTTAAAGACTGTTGTTTCCCACTTTAGCATG  1149
      ||||||||||||||||| |||  ||||||||||||  |||| ||||||||
seq2  TCACAAAGCAAGCTTTTAACT--AAGACTGTTGTT--CCAC-TTAGCATG  1128

seq1  -CTAGACAACCTCAGGTGATATTGACCTTACTCATGTCAGT  1189
       |||||| |||||||||||| | ||| | ||||||||||||
seq2  TCTAGAC-ACCTCAGGTGAT-TGGACTTAACTCATGTCAGT  1167