BAC Information

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BAC

Clone NameB6Ng01-333F18
Chromosome13 (Build37)
Map Location 39,869,716 - 39,976,892
singlet/doubletdoublet
Overlap geneA230103O09Rik
Upstream geneSlc35b3, EG666867, LOC100041779, LOC382747
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333F18.bB6Ng01-333F18.g
ACCGA119194GA119195
length1,1751,141
definitionB6Ng01-333F18.b B6Ng01-333F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,869,716 - 39,870,919)(39,975,739 - 39,976,892)
sequence
gaattcagtcttttatggaatcacaatgagttgatataagcaattgcaac
aaaaacaacatcaaaagaaattacaccaccatcaaactatctcataatat
cattagtgacctaaattaaagcaagataattgcccgagcagacaacaaac
agccacgaagaatactaataatgtcgaaagcccgttccaacactctgcca
ggagcccagcttcaaacgctcttgcaatttgtgttcagatctcctgacaa
agctctttctcaagttcagaaaaagaaaacaaaaccagtctcgctcacct
ttatctctgttttctctaaccttcttccaggtccttattacaatcataaa
gcagaaacgggagcctcaaagctaagctgaatgttgacccagaagtgctg
acgtaactgtggttgttgttggggaagcaacgtgtctcaggcatgaagtt
caggtcaatggtgtattggctgaaacacttaattttctgtaataaattgg
atcataaggggaaagttcaccacagtcattccagtcttctgggaatgctg
gttctaacaatgactttcatcagcaatgtctaatgtacatgatactaaaa
aatagggggtgcctgaagtgagactcttatacttctcctctgtttcctag
ggtcagatgtgacaggaatggacctgagtggaaaacttagctatgacttc
atggatccagatgaaccggtttcctcagtagcacatgaacaagacgttct
aagtttttctcaggttctcaaagatagttacatgcatcataagatcagag
ttggaacccagagaaacatcctatttaaaaagccactatggtcttggacc
actattgagttaggtacagaaacaggtacccatggcccatcattggtggg
caatgaagaaagagtacaagcaaagatccttgtaaaacctgcgctcgtta
ttttcatttgtaagtggcgaggaagtgcatttgagctcagtacaaacatc
tctcatatgattttcttctaagtatgatgtattctcactgctcactacgc
tgaaaataaagaggtgtgttcagtggcactgggtggtggtattctctctg
atgctatgaaaaaatcagcaagtgcctcaagtctgcaactgaccgactac
tgaacctttatctcgtcaggactag

gaattctttacaaacaagagattctaatatttcaaggtccagtggttgtt
ctgagaatgaggccagctttcttcttttatcttgtcctgtggctcttcat
tagccaggctccttctttgaaagtgaataaaacacggacatgcaaaagtt
aagattcacatcctcgcagttttgcaactgacagtatttagttcttgatt
cagggcggggaagaggaagccattaaagcagaacctgcccatcagaccag
tttggtttaatccaaattcggccactctcaaggccagttccaccttgcgt
aacactgaaaggttacgttttgcttttcgttggttggtttttcagctgta
gtcaatataagtgaccaaggccccaaaacaaaacacaacaaaacaacaac
aacaacaacaacaacaacaacaacaaacagaaagaaatagatgaaatgac
caaacaaaacaacaaacaaacaacaaaacaaaacaaaacaaaacggagaa
aaaaatcatttaattgtgatggattttattgtataagcaaaactttcagg
aattctaaatccttgtagtattaacagatgatttggagtatagattaatg
tctgtgtcccagtttgggcttaggcataagggaaatagtggattccaata
atttcaattataatattccttagagaataaagaaatatggtagctaccat
ctctctgtcttttagtaaaaacccatttacacacaaatagtgtggctgcc
tttcctaaaacctcacctaccctctttaaaatgaggaaataaaataagta
ggaaaaaatatttctaattcatagctcaattgaaactgggagaaaaaata
tctcacagtcaaagttagattttcttgaaaagattttaataaaatttttg
gaataaagtttaacaaaactttgttgcaaaataaagatccccattgagtc
tttggtaataatcagaagtgaagagacagaaagtcacagtgacagaaaat
cagagcaaaaaagaaggggagagccgactaggtcagcgctaactctgtgt
tctctttgctacagcaggctaatcagttgtaataagaggcaaagtagcag
tctataacagcactgtcaccaatgtcatcttggggatcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_39869716_39870919
seq2: B6Ng01-333F18.b_47_1221

seq1  GAATTCAGTCTTTTATGGAATCACAATGAGTTGATATAAGCAATTGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTTTATGGAATCACAATGAGTTGATATAAGCAATTGCAAC  50

seq1  AAAAACAACATCAAAAGAAATTACACCACCATCAAACTATCTCATAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACATCAAAAGAAATTACACCACCATCAAACTATCTCATAATAT  100

seq1  CATTAGTGACCTAAATTAAAGCAAGATAATTGCCCGAGCAGACAACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTGACCTAAATTAAAGCAAGATAATTGCCCGAGCAGACAACAAAC  150

seq1  AGCCACGAAGAATACTAATAATGTCGAAAGCCCGTTCCAACACTCTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGAAGAATACTAATAATGTCGAAAGCCCGTTCCAACACTCTGCCA  200

seq1  GGAGCCCAGCTTCAAACGCTCTTGCAATTTGTGTTCAGATCTCCTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGCTTCAAACGCTCTTGCAATTTGTGTTCAGATCTCCTGACAA  250

seq1  AGCTCTTTCTCAAGTTCAGAAAAAGAAAACAAAACCAGTCTCGCTCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTCTCAAGTTCAGAAAAAGAAAACAAAACCAGTCTCGCTCACCT  300

seq1  TTATCTCTGTTTTCTCTAACCTTCTTCCAGGTCCTTATTACAATCATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTGTTTTCTCTAACCTTCTTCCAGGTCCTTATTACAATCATAAA  350

seq1  GCAGAAACGGGAGCCTCAAAGCTAAGCTGAATGTTGACCCAGAAGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACGGGAGCCTCAAAGCTAAGCTGAATGTTGACCCAGAAGTGCTG  400

seq1  ACGTAACTGTGGTTGTTGTTGGGGAAGCAACGTGTCTCAGGCATGAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAACTGTGGTTGTTGTTGGGGAAGCAACGTGTCTCAGGCATGAAGTT  450

seq1  CAGGTCAATGGTGTATTGGCTGAAACACTTAATTTTCTGTAATAAATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAATGGTGTATTGGCTGAAACACTTAATTTTCTGTAATAAATTGG  500

seq1  ATCATAAGGGGAAAGTTCACCACAGTCATTCCAGTCTTCTGGGAATGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGGGGAAAGTTCACCACAGTCATTCCAGTCTTCTGGGAATGCTG  550

seq1  GTTCTAACAATGACTTTCATCAGCAATGTCTAATGTACATGATACTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAACAATGACTTTCATCAGCAATGTCTAATGTACATGATACTAAAA  600

seq1  AATAGGGGGTGCCTGAAGTGAGACTCTTATACTTCTCCTCTGTTTCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGGGTGCCTGAAGTGAGACTCTTATACTTCTCCTCTGTTTCCTAG  650

seq1  GGTCAGATGTGACAGGAATGGACCTGAGTGGAAAACTTAGCTATGACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGATGTGACAGGAATGGACCTGAGTGGAAAACTTAGCTATGACTTC  700

seq1  ATGGATCCAGATGAACCGGTTTCCTCAGTAGCACATGAACAAGACGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCCAGATGAACCGGTTTCCTCAGTAGCACATGAACAAGACGTTCT  750

seq1  AAGTTTTTCTCAGGTTCTCAAAGATAGTTACATGCATCATAAGATCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTCTCAGGTTCTCAAAGATAGTTACATGCATCATAAGATCAGAG  800

seq1  TTGGAACCCAGAGAAACATCCTATTTAAAAAGCCACTATGGTCTTGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACCCAGAGAAACATCCTATTTAAAAAGCCACTATGGTCTTGGACC  850

seq1  ACTATTGAGTTAGGTACAGAAACAGGTACCCATGGCCCATCATTGGTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGAGTTAGGTACAGAAACAGGTACCCATGGCCCATCATTGGTGGG  900

seq1  CAATGAAGAAAGAGTACAAGCAAAGATCCTTGTAAAAACCTGCGCTCGTT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAATGAAGAAAGAGTACAAGCAAAGATCCTTGT-AAAACCTGCGCTCGTT  949

seq1  ATTTTCATTTGTAAGTGGCGAGGAAGTGCATTTGAGCTCAGTACAAACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTGTAAGTGGCGAGGAAGTGCATTTGAGCTCAGTACAAACAT  999

seq1  CTTCCTCATTATGATTTTTCCTTCCTTAAGTATGATTGTATTCTCCACCT  1050
      ||  |||| |||||||||  ||||  ||||||||| |||||||||   ||
seq2  CT--CTCA-TATGATTTT--CTTC--TAAGTATGA-TGTATTCTC--ACT  1039

seq1  GCTTCACTAACGCTGAAAAATAAAGAGGTGTGTTCAGTGGGCCACTGGGT  1100
      || ||||| |||||| ||||||||||||||||||||||||  ||||||||
seq2  GC-TCACT-ACGCTG-AAAATAAAGAGGTGTGTTCAGTGG--CACTGGGT  1084

seq1  -GTGGTATTCTCCTCTGATGCTTAATGAAAAAAATCAGCCAAGGTTTGCT  1149
       |||||||||| ||||||||||  ||| |||||||||| ||||   ||| 
seq2  GGTGGTATTCT-CTCTGATGCT--ATG-AAAAAATCAG-CAAG---TGCC  1126

seq1  TCCAGGTCCTGGATACTGACGGACTACTGAGCCTCTTATCTTCGTCAGGA  1199
      || ||   ||| | |||||| ||||||||| ||| ||||| |||||||||
seq2  TCAAG--TCTGCA-ACTGACCGACTACTGAACCT-TTATC-TCGTCAGGA  1171

seq1  TCTAG  1204
       ||||
seq2  -CTAG  1175


seq1: chr13_39975739_39976892
seq2: B6Ng01-333F18.g_62_1202 (reverse)

seq1  ACTGATCACCAAGATGACAACTGGTGACAAGTGCTGTTTATTAGACTGCT  50
      ||||||| |||||||||| | ||||||| |||||||||   |||||||||
seq2  ACTGATCCCCAAGATGAC-ATTGGTGAC-AGTGCTGTT--ATAGACTGCT  46

seq1  ACTTTGCCTCTTAATTACAACTGATTAGCCTGCTGTTAGCAAAGGGAAAC  100
      |||||||||||| |||||||||||||||||||||| |||||||| |||  
seq2  ACTTTGCCTCTT-ATTACAACTGATTAGCCTGCTG-TAGCAAAGAGAACA  94

seq1  AAGAGTTAGCGCTTGAACCTAGTCGGC-CTCCCCTTCCTTTTTTTGCTCT  149
       ||||||||||||   ||||||||||| |||||||||  |||||||||||
seq2  CAGAGTTAGCGCT--GACCTAGTCGGCTCTCCCCTTC--TTTTTTGCTCT  140

seq1  GATTTTCTGTCCACTGTGACTTTTCTGTTCTCTTCACTTCTGATTATTAC  199
      |||||||||| ||||||||| |||||| ||||||||||||||||||||||
seq2  GATTTTCTGT-CACTGTGAC-TTTCTG-TCTCTTCACTTCTGATTATTAC  187

seq1  CAAAGACTCAATGGGGATCTTTATTTTGCAAACAAAGTTTTGTTAAACTT  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAAGACTCAATGGGGATCTTTATTTTGC-AACAAAGTTTTGTTAAACTT  236

seq1  TATTCCAAAAATTTTATTAAAATCTTTTCAAGAAAATCTAACTTTGACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAAAAATTTTATTAAAATCTTTTCAAGAAAATCTAACTTTGACTG  286

seq1  TGAGATATTTTTTCTCCCAGTTTCAATTGAGCTATGAATTAGAAATATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATTTTTTCTCCCAGTTTCAATTGAGCTATGAATTAGAAATATTT  336

seq1  TTTCCTACTTATTTTATTTCCTCATTTTAAAGAGGGTAGGTGAGGTTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACTTATTTTATTTCCTCATTTTAAAGAGGGTAGGTGAGGTTTTA  386

seq1  GGAAAGGCAGCCACACTATTTGTGTGTAAATGGGTTTTTACTAAAAGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCAGCCACACTATTTGTGTGTAAATGGGTTTTTACTAAAAGACA  436

seq1  GAGAGATGGTAGCTACCATATTTCTTTATTCTCTAAGGAATATTATAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGTAGCTACCATATTTCTTTATTCTCTAAGGAATATTATAATT  486

seq1  GAAATTATTGGAATCCACTATTTCCCTTATGCCTAAGCCCAAACTGGGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATTGGAATCCACTATTTCCCTTATGCCTAAGCCCAAACTGGGAC  536

seq1  ACAGACATTAATCTATACTCCAAATCATCTGTTAATACTACAAGGATTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTAATCTATACTCCAAATCATCTGTTAATACTACAAGGATTTA  586

seq1  GAATTCCTGAAAGTTTTGCTTATACAATAAAATCCATCACAATTAAATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAAGTTTTGCTTATACAATAAAATCCATCACAATTAAATGA  636

seq1  TTTTTTTCTCCGTTTTGTTTTGTTTTGTTTTGTTGTTTGTTTGTTGTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCCGTTTTGTTTTGTTTTGTTTTGTTGTTTGTTTGTTGTTTT  686

seq1  GTTTGGTCATTTCATCTATTTCTTTCTGTTTGTTGTTGTTGTTGTTGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTCATTTCATCTATTTCTTTCTGTTTGTTGTTGTTGTTGTTGTTG  736

seq1  TTGTTGTTGTTGTTTTGTTGTGTTTTGTTTTGGGGCCTTGGTCACTTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTTTGTTGTGTTTTGTTTTGGGGCCTTGGTCACTTATA  786

seq1  TTGACTACAGCTGAAAAACCAACCAACGAAAAGCAAAACGTAACCTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTACAGCTGAAAAACCAACCAACGAAAAGCAAAACGTAACCTTTCA  836

seq1  GTGTTACGCAAGGTGGAACTGGCCTTGAGAGTGGCCGAATTTGGATTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACGCAAGGTGGAACTGGCCTTGAGAGTGGCCGAATTTGGATTAAA  886

seq1  CCAAACTGGTCTGATGGGCAGGTTCTGCTTTAATGGCTTCCTCTTCCCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGGTCTGATGGGCAGGTTCTGCTTTAATGGCTTCCTCTTCCCCG  936

seq1  CCCTGAATCAAGAACTAAATACTGTCAGTTGCAAAACTGCGAGGATGTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATCAAGAACTAAATACTGTCAGTTGCAAAACTGCGAGGATGTGA  986

seq1  ATCTTAACTTTTGCATGTCCGTGTTTTATTCACTTTCAAAGAAGGAGCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACTTTTGCATGTCCGTGTTTTATTCACTTTCAAAGAAGGAGCCT  1036

seq1  GGCTAATGAAGAGCCACAGGACAAGATAAAAGAAGAAAGCTGGCCTCATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATGAAGAGCCACAGGACAAGATAAAAGAAGAAAGCTGGCCTCATT  1086

seq1  CTCAGAACAACCACTGGACCTTGAAATATTAGAATCTCTTGTTTGTAAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACAACCACTGGACCTTGAAATATTAGAATCTCTTGTTTGTAAAG  1136

seq1  AATTC  1154
      |||||
seq2  AATTC  1141


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