BAC Information

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BAC

Clone NameB6Ng01-333M14
Chromosome13 (Build37)
Map Location 12,953,291 - 13,089,916
singlet/doubletdoublet
Overlap geneLOC100039999, LOC100039754, Prl2c2
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
Downstream geneLOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333M14.bB6Ng01-333M14.g
ACCGA119466GA119467
length1,1301,079
definitionB6Ng01-333M14.b B6Ng01-333M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,088,770 - 13,089,916)(12,953,291 - 12,954,278)
sequence
gaattctacttcacaatacaatgactatattttatacttttacaattgaa
cttatacaactcataaaactacaaaagattgtaaatatatgtttgtatag
aaaatgggaagattatttcagtcttttgaagaaaaaagtattttaactaa
ctctattatattattcaaatgtggttacttagtatgcagctcttctgaaa
tcaggagccatgattttggatgcctgggaaagccctctggacgatctagt
gagtgaattatctaccataaaaaatgtccctgatataatcatctccaaag
ccacagacataaagaaaaagatcaacgcagtccggaacggggttaatgcc
ctcatgagcaccatggtgagtagtcccatatatgttttttcacttttctt
cttataagagaggtgagcagagcaagcataaagttttgaaggagttcact
ttaaaaaatacaaacaaacataaacaaaaacaaaaccagaaacaaacaaa
caaacaaaaaaccctttggcatccatataactacaagccatactactaat
tggatgatggcaattccaactgtctgagaagagtgttattcagaatctta
cattgcagggctctcaggaaaaaagtaagtgctcctcatttaatttggac
attacctctctcagtggaaaagaaaaaaacagacactacaacacctaagt
acctgagcaggtgttgttaccaccatcattccatgaatatttacatctta
aaccatcaagtataaaaataatttcatctcaggttactcaggttaagaat
atttacattatattaagaattgatttgtccaaaaacaagatatgtgaaaa
agatctgttttcaataaaaagaaaaaatgggcagcatttcaatgcccgta
cctactattttttttaaagcaagtcgtagacttttgaagacatagggatg
atccttatgtgatatataaacatctattgcttaatgtcattctttcagtc
tgtgtctaaaatcagtaagtactgatgtcatctatcacttctgtagagtg
tactgatcagacaaagagacagccacaattctttctgttagctaccttca
catatcatgaaatcaataacttagctgttt
gaattctcctctgaagaaacagacttggaggaggaagcagctcgttatga
gagaaaaaagtaccagccagataaaatgctagctaatcagttaaggaaaa
agccaaaagcggctggcgaaggccagcatgctgttcagcctccaggcagt
cggcttcaaggtcatagtgcacctccgccctatgcggaggccccgccctg
cataagccgtcagctctgcgcagagaggcaatggacagagaggcaatgcg
cagactcgttcattcctagagaggaacaaaggaaaatgcaacaggcattt
ccggtctttgaaggagccgagggtgggcatgtccatgctccggtagaatt
tgtgcagattaaagagcttgccgagtcggtccgtaaatatggaaccaatg
ctaattttaccttggtgcagttagacaggcttgccggcatggcactaact
cctgccgactggcaaatgattgcaaaagccgctctccctagtatgggcaa
atatatggaatggagagctctatggcaagaggctgcacaagtgcaggcct
gagcaaacgctgctgctttgactccagagcagagagattggacttttggt
aggggtaaacccccgtggcggagaaaaagcctcacatgtgattcaacatt
gccttgaggcatggagtgcttgggggaaacccaaactccttaagactgat
aatggaccagcttatacacatcaaaaattccagcagttctgccgtcagat
ggacgtgacccacctgactggacttccatacaaccctcaaggacagggta
ttgttgagcgtgcgcatcgcaccctcaaatcctatctattaaaacagaaa
gggggaggaggctctacaccgagtaccaagagtgtctgtgtctatggcac
tctttacactcaattttttaaatcttgatgctcatggccatactgcggct
gacgtcatgtcagagccagataggcccatgagatggtaaatggaaatggc
ctttgaataaataatggtatgggccgatcctattttgataagaatctcgg
ggagctgtttggtcttccagatgaagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13088770_13089916
seq2: B6Ng01-333M14.b_47_1176 (reverse)

seq1  AAACAAGCTAAGTGTATGAATTTCCATGATATTGGTGAGGGTAGCTAAAA  50
      |||| |||||||| |||  |||| ||||||||  |||| |||||||  ||
seq2  AAAC-AGCTAAGT-TATTGATTT-CATGATAT--GTGAAGGTAGCT--AA  43

seq1  CAGAAGAATTTGTTGCTTGTCTTTTTTGTCTGATCAGTTACACTCTTACA  100
      |||||  | |||| || |||| | ||||||||||||| ||||||| ||||
seq2  CAGAAAGAATTGTGGC-TGTC-TCTTTGTCTGATCAG-TACACTC-TACA  89

seq1  GAAGTTGATAGATGGACAATCAGTAACTTACTTGATTTTAGACACAGACT  150
      |||| |||||||| ||| |||||| |||||| ||||||||||||||||| 
seq2  GAAG-TGATAGAT-GAC-ATCAGT-ACTTAC-TGATTTTAGACACAGAC-  133

seq1  TGAAAGAATGACAATTAAGCAATAGATGTTTATTATATCACATAAGGATC  200
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TGAAAGAATGAC-ATTAAGCAATAGATGTTTA-TATATCACATAAGGATC  181

seq1  ATCCCTATGTCTTCAAAAGTCTACGACTTGCTTTAAAAAAAATAGTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTATGTCTTCAAAAGTCTACGACTTGCTTTAAAAAAAATAGTAGGT  231

seq1  ACGGGCATTGAAATGCTGCCCATTTTTTCTTTTTATTGAAAACAGATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCATTGAAATGCTGCCCATTTTTTCTTTTTATTGAAAACAGATCTT  281

seq1  TTTCACATATCTTGTTTTTGGACAAATCAATTCTTAATATAATGTAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATATCTTGTTTTTGGACAAATCAATTCTTAATATAATGTAAATA  331

seq1  TTCTTAACCTGAGTAACCTGAGATGAAATTATTTTTATACTTGATGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACCTGAGTAACCTGAGATGAAATTATTTTTATACTTGATGGTTT  381

seq1  AAGATGTAAATATTCATGGAATGATGGTGGTAACAACACCTGCTCAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAAATATTCATGGAATGATGGTGGTAACAACACCTGCTCAGGTA  431

seq1  CTTAGGCATTGTAGTGTCTGTTTTTT--TTTTCCACTGAGAGAGGTAATG  498
      ||||||  ||||||||||||||||||  ||||||||||||||||||||||
seq2  CTTAGGTGTTGTAGTGTCTGTTTTTTTCTTTTCCACTGAGAGAGGTAATG  481

seq1  TCCAAATTAAATGAGGAGCACTTACTTTTTTCCTGAGAGCCCTGCAATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTAAATGAGGAGCACTTACTTTTTTCCTGAGAGCCCTGCAATGT  531

seq1  AAGATTCTGAATAACACTCTTCTCAGACAGTTGGAATTGCCATCATCCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTGAATAACACTCTTCTCAGACAGTTGGAATTGCCATCATCCAA  581

seq1  TTAGTAGTATGGCTTGTAGTTATATGGATGCCAAAGGGTTTTTTGTTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGTATGGCTTGTAGTTATATGGATGCCAAAGGGTTTTTTGTTTGT  631

seq1  TTGTTTGTTTCTGGTTTTGTTTTTGTTTATGTTTGTTTGTATTTTTTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTCTGGTTTTGTTTTTGTTTATGTTTGTTTGTATTTTTTAAA  681

seq1  GTGAACTCCTTCAAAACTTTATGCTTGCTCTGCTCACCTCTCTTATAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTCCTTCAAAACTTTATGCTTGCTCTGCTCACCTCTCTTATAAGA  731

seq1  AGAAAAGTGAAAAAACATATATGGGACTACTCACCATGGTGCTCATGAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTGAAAAAACATATATGGGACTACTCACCATGGTGCTCATGAGG  781

seq1  GCATTAACCCCGTTCCGGACTGCGTTGATCTTTTTCTTTATGTCTGTGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAACCCCGTTCCGGACTGCGTTGATCTTTTTCTTTATGTCTGTGGC  831

seq1  TTTGGAGATGATTATATCAGGGACATTTTTTATGGTAGATAATTCACTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGATGATTATATCAGGGACATTTTTTATGGTAGATAATTCACTCA  881

seq1  CTAGATCGTCCAGAGGGCTTTCCCAGGCATCCAAAATCATGGCTCCTGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCGTCCAGAGGGCTTTCCCAGGCATCCAAAATCATGGCTCCTGAT  931

seq1  TTCAGAAGAGCTGAATACTAAGTAACCACATTTGAATAATATAATAGAGT  998
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGAGCTGCATACTAAGTAACCACATTTGAATAATATAATAGAGT  981

seq1  TAGTTAAAATACTTTTTTCTTCAAAAGACTGAAATAATCTTCCCATTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAAATACTTTTTTCTTCAAAAGACTGAAATAATCTTCCCATTTTC  1031

seq1  TATACAAACATATATTTACAATCTTTTGTAGTTTTATGAGTTGTATAAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAACATATATTTACAATCTTTTGTAGTTTTATGAGTTGTATAAGT  1081

seq1  TCAATTGTAAAAGTATAAAATATAGTCATTGTATTGTGAAGTAGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTAAAAGTATAAAATATAGTCATTGTATTGTGAAGTAGAATTC  1130

seq1: chr13_12953291_12954278
seq2: B6Ng01-333M14.g_167_1144

seq1  GCCAAAAGCGGCTGGCGAAGGCCAGCATGCTGTTCAGCCTCCAGGCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGCGGCTGGCGAAGGCCAGCATGCTGTTCAGCCTCCAGGCAGTC  50

seq1  GGCTTCAAGGTCATAGTGCACCTCCGCCCTATGCGGAGGCCCCGCCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAGGTCATAGTGCACCTCCGCCCTATGCGGAGGCCCCGCCCTGC  100

seq1  ATAAGCCGTCAGCTCTGCGCAGAGAGGCAATGGACAGAGAGGCAATGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCGTCAGCTCTGCGCAGAGAGGCAATGGACAGAGAGGCAATGCGC  150

seq1  AGACTCGTTCATTCCTAGAGAGGAACAAAGGAAAATGCAACAGGCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGTTCATTCCTAGAGAGGAACAAAGGAAAATGCAACAGGCATTTC  200

seq1  CGGTCTTTGAAGGAGCCGAGGGTGGGCATGTCCATGCTCCGGTAGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTTTGAAGGAGCCGAGGGTGGGCATGTCCATGCTCCGGTAGAATTT  250

seq1  GTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGGAACCAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGGAACCAATGC  300

seq1  TAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACTAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACTAACTC  350

seq1  CTGCCGACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGTATGGGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGTATGGGCAAA  400

seq1  TATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGTGCAGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGTGCAGGCCTG  450

seq1  AGCAAACGCTGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACGCTGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGGTA  500

seq1  GGGGTAAACCCCCGTGGCGGAGAAAAAGCCTCACATGTGATTCAACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAACCCCCGTGGCGGAGAAAAAGCCTCACATGTGATTCAACATTG  550

seq1  CCTTGAGGCATGGAGTGCTTGGGGGAAACCCAAACTCCTTAAGACTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGCATGGAGTGCTTGGGGGAAACCCAAACTCCTTAAGACTGATA  600

seq1  ATGGACCAGCTTATACACATCAAAAATTCCAGCAGTTCTGCCGTCAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCAGCTTATACACATCAAAAATTCCAGCAGTTCTGCCGTCAGATG  650

seq1  GACGTGACCCACCTGACTGGACTTCCATACAACCCTCAAGGACAGGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGACCCACCTGACTGGACTTCCATACAACCCTCAAGGACAGGGTAT  700

seq1  TGTTGAGCGTGCGCATCGCACCCTCAAATCCTATCTATTAAAACAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGCGTGCGCATCGCACCCTCAAATCCTATCTATTAAAACAGAAAG  750

seq1  GGGGAGGAGGCTCTACACCGAGTACCAAGAGTGTCTGTGTCTATGGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAGGCTCTACACCGAGTACCAAGAGTGTCTGTGTCTATGGCACT  800

seq1  CTTTACACTCAATTTTTTAAATCTTGATGCTCATGGCCATACTGCGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACTCAATTTTTTAAATCTTGATGCTCATGGCCATACTGCGGCTG  850

seq1  AACGTCATTGTTCAGAGCCAGATAGGCCCAATGAGATGGTTAAATGGAAA  900
       |||||||   |||||||||||||||||| ||||||||| |||||||  |
seq2  -ACGTCAT--GTCAGAGCCAGATAGGCCC-ATGAGATGG-TAAATGG--A  893

seq1  AATGTCCTT--GATAATAAATGGTATGGCCCGGATCCTATTTTGATAAG-  947
      |||| ||||   ||||  |||||||||| || ||||||||||||||||| 
seq2  AATGGCCTTTGAATAAATAATGGTATGGGCC-GATCCTATTTTGATAAGA  942

seq1  ATCTCGGGGAGCTGTTTGTGTTTTTCCACAGAATGAAGACA  988
      ||||||||||||||||  || | |||||    |||||||||
seq2  ATCTCGGGGAGCTGTT--TGGTCTTCCA---GATGAAGACA  978