BAC Information

Click to search

BAC

Clone NameB6Ng01-333O05
Chromosome13 (Build37)
Map Location 116,437,951 - 116,534,432
singlet/doubletdoublet
Overlap geneLOC100041045
Upstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
Downstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333O05.bB6Ng01-333O05.g
ACCGA119537GA119538
length1,0951,237
definitionB6Ng01-333O05.b B6Ng01-333O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,533,322 - 116,534,432)(116,437,951 - 116,439,138)
sequence
gaattctaaagctgggtatatctctgagatctttaagatgtgaagttttg
tggattattatctttacaacactgatttattttgtagagtatacttaaaa
ctcatcagttgctgtggcccacagtgtaacgaaataatctctatcctgtc
tatgagggattaagatgcaattattgtacccagggtaaaagttgctggat
ccttgacattatgatggtgtgggttaagagaaaagaactccaatgctttg
ctgtagcaggatgctttatcggcatttcatgtgtttcctaaatgccagtt
agcatgcagactccagcgtatggatttttcaaactttgaaccaatcctat
aaggctgacatgaaatcacttttataggatactgaggacaacttacctcc
tgaatgaatttgcagatgtccattggtccccaatcactatctaaatgtaa
tgcttagaccggggttttaacaatccttttcataaaatcctaccttaaac
acttaaagccatcagataacaaccagatgactaaataaatttcagtagcc
gtttggtacatttttctctaaactggctgctggggttttttttttttttt
ctttctgcttctatttttttttgttttgtttagtttttttttcttctctt
tgccccccagagaagggcagagtggagggagagctgtaagtctctgggtt
gcaggataaatcctgcttggctgcccgtggctacctcatttagcagctgg
tagcactgtgtagcaatgcccagcactcgctcttacagtcttttatgtaa
tataatatatattttttaaattgattgcaattttttgagcactttggggg
ctgctggtggtctccttttcaggctaaatagaccaaccgctgctgctaaa
agagtttattcgacacccacactcggatgcacagccccttctcccgtgtt
tccctgaagtagcagtcagcaagacgtacagtaataactgtgagcagctc
aggctcagaaaaatgtcacagctgatcctcgagcttcagtgccccattca
tcagtgctcactgcatgacgcacctgaaactaaatgaaggctctg

gaattctgttgcaaacccatcccattttgccctagactttttctttagtg
ggaaggatcttaattactatttcagtttcctcatttgttattaattttta
ggtctacttaatttgctttcttcttggtttaatttttatgatttgactca
atctagaaacctatccatttctttttgtttttccagcttaatgatgtata
ggcttttaaaaatattccattataatattctcaacttctttattgtctat
tgtagtatttccctattcgtttctgactatttttattcgggtgttttctt
ttcctttttccttttctcttttgattagttggttcaaggatctgtcaatc
ttgtttattttctgaaaaaataactcttatttggttactcatttgcatta
tatactttgtttctatttcattgatttctactctgatttttatattttcc
tgacatctgctgggtttagatttggtttgttttagtttttaaaaatttga
actatgccattaagtctttaatttgtgttctttcttatttttaatgtcct
tttaaagtatagatgtccatcaactgataaataaaaaataccaatagaaa
agccttattttccaaaaactacaatataaaatttatagggaagttaatgg
aactgaagataatcatgttaagaaaaatactaaactagactaaaaatttg
catatcacatacttcctttcatatgagtaaacaagattttctcactttgt
tttattttaaaataatattaataagcttattctttgactctttatacaca
catacacacagtgaattctcattattgttacatggattgaagtctgctca
ttgaagaattatcagctaacataccattttatatgcaaatgaataccata
tttctctttttgtgtctcagttgcctaagtcaagatgaatttttaatgcc
caccaatttcacatgagatttcatgatttcattatttttacatctgacta
atattcttgttgtctacataataccaacattttgttcatcatgatgggca
tctagctgtttccagaatatgttttctggctatttatgaaaagaacagca
ataccatgctgaatagattctcctggaacagtaggaatgtggagtacttt
gaatataatgttagaactctaatagctgaactctgagtaatctgttctca
gctttcgggaacctcccaatagttctatagtggctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116533322_116534432
seq2: B6Ng01-333O05.b_48_1142 (reverse)

seq1  CAGAGCTTTCATTTTAAGTTTCAGGGTGCGTCATGCAGTTGAGCACTGAT  50
      |||||| |||||||  ||||||| |||||||||||||| |||||||||| 
seq2  CAGAGCCTTCATTT--AGTTTCA-GGTGCGTCATGCAG-TGAGCACTGA-  45

seq1  TGAATGGGGGCACTGGAAGCTCGAGGGATCAAGCTGTGACATTTTTCTGA  100
      ||||| |||||||| ||||||||| ||||| |||||||||||||||||||
seq2  TGAAT-GGGGCACT-GAAGCTCGA-GGATC-AGCTGTGACATTTTTCTGA  91

seq1  GCCTGGAGGCTGCTCACAGTTATTACTGTACGGTCCTTGCTGACTGCTAC  150
      |||||   ||||||||||||||||||||||||   |||||||||||||||
seq2  GCCTG--AGCTGCTCACAGTTATTACTGTACG--TCTTGCTGACTGCTAC  137

seq1  TTCAGGGAAACACGGGGAGAAGGGGGCTGTGCATCCGAGTGTGGGTGGTC  200
      ||||||||||||| ||||||| |||||||||||||||||||||||| |||
seq2  TTCAGGGAAACAC-GGGAGAA-GGGGCTGTGCATCCGAGTGTGGGT-GTC  184

seq1  GAATAAACTCTTTTAGCAGCAGCGGTTGGTCTATTTAGCCTGAAAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACTCTTTTAGCAGCAGCGGTTGGTCTATTTAGCCTGAAAAGGAG  234

seq1  ACCACCAGCAGCCCCCAAAGTGCTCAAAAAATTGCAATCAATTTAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGCAGCCCCCAAAGTGCTCAAAAAATTGCAATCAATTTAAAAAA  284

seq1  TATATATTATATTACATAAAAGACTGTAAGAGCGAGTGCTGGGCATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTATATTACATAAAAGACTGTAAGAGCGAGTGCTGGGCATTGCT  334

seq1  ACACAGTGCTACCAGCTGCTAAATGAGGTAGCCACGGGCAGCCAAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGCTACCAGCTGCTAAATGAGGTAGCCACGGGCAGCCAAGCAGG  384

seq1  ATTTATCCTGCAACCCAGAGACTTACAGCTCTCCCTCCACTCTGCCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCTGCAACCCAGAGACTTACAGCTCTCCCTCCACTCTGCCCTTC  434

seq1  TCTGGGGGGCAAAGAGAAGAAAAAAAAACTAAACAAAACAAAAAAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGGCAAAGAGAAGAAAAAAAAACTAAACAAAACAAAAAAAAATA  484

seq1  GAAGCAGAAAGAAAAAAAAAAAAAAACCCCAGCAGCCAGTTTAGAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAAAGAAAAAAAAAAAAAAACCCCAGCAGCCAGTTTAGAGAAAA  534

seq1  ATGTACCAAACGGCTACTGAAATTTATTTAGTCATCTGGTTGTTATCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCAAACGGCTACTGAAATTTATTTAGTCATCTGGTTGTTATCTGA  584

seq1  TGGCTTTAAGTGTTTAAGGTAGGATTTTATGAAAAGGATTGTTAAAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAAGTGTTTAAGGTAGGATTTTATGAAAAGGATTGTTAAAACCC  634

seq1  CGGTCTAAGCATTACATTTAGATAGTGATTGGGGACCAATGGACATCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTAAGCATTACATTTAGATAGTGATTGGGGACCAATGGACATCTGC  684

seq1  AAATTCATTCAGGAGGTAAGTTGTCCTCAGTATCCTATAAAAGTGATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTCAGGAGGTAAGTTGTCCTCAGTATCCTATAAAAGTGATTTC  734

seq1  ATGTCAGCCTTATAGGATTGGTTCAAAGTTTGAAAAATCCATACGCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCCTTATAGGATTGGTTCAAAGTTTGAAAAATCCATACGCTGGA  784

seq1  GTCTGCATGCTAACTGGCATTTAGGAAACACATGAAATGCCGATAAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATGCTAACTGGCATTTAGGAAACACATGAAATGCCGATAAAGCA  834

seq1  TCCTGCTACAGCAAAGCATTGGAGTTCTTTTCTCTTAACCCACACCATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTACAGCAAAGCATTGGAGTTCTTTTCTCTTAACCCACACCATCA  884

seq1  TAATGTCAAGGATCCAGCAACTTTTACCCTGGGTACAATAATTGCATCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCAAGGATCCAGCAACTTTTACCCTGGGTACAATAATTGCATCTT  934

seq1  AATCCCTCATAGACAGGATAGAGATTATTTCGTTACACTGTGGGCCACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTCATAGACAGGATAGAGATTATTTCGTTACACTGTGGGCCACAG  984

seq1  CAACTGATGAGTTTTAAGTATACTCTACAAAATAAATCAGTGTTGTAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGATGAGTTTTAAGTATACTCTACAAAATAAATCAGTGTTGTAAAG  1034

seq1  ATAATAATCCACAAAACTTCACATCTTAAAGATCTCAGAGATATACCCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATCCACAAAACTTCACATCTTAAAGATCTCAGAGATATACCCAG  1084

seq1  CTTTAGAATTC  1111
      |||||||||||
seq2  CTTTAGAATTC  1095


seq1: chr13_116437951_116439138
seq2: B6Ng01-333O05.g_117_1303

seq1  GGAAGGATCTTAATTACTATTTCAGTTTCCTCATTTGTTATTAATTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATCTTAATTACTATTTCAGTTTCCTCATTTGTTATTAATTTTTA  50

seq1  GGTCTACTTAATTTGCTTTCTTCTTGGTTTAATTTTTATGATTTGACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTTAATTTGCTTTCTTCTTGGTTTAATTTTTATGATTTGACTCA  100

seq1  ATCTAGAAACCTATCCATTTCTTTTTGTTTTTCCAGCTTAATGATGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAACCTATCCATTTCTTTTTGTTTTTCCAGCTTAATGATGTATA  150

seq1  GGCTTTTAAAAATATTCCATTATAATATTCTCAACTTCTTTATTGTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTAAAAATATTCCATTATAATATTCTCAACTTCTTTATTGTCTAT  200

seq1  TGTAGTATTTCCCTATTCGTTTCTGACTATTTTTATTCGGGTGTTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATTTCCCTATTCGTTTCTGACTATTTTTATTCGGGTGTTTTCTT  250

seq1  TTCCTTTTTCCTTTTCTCTTTTGATTAGTTGGTTCAAGGATCTGTCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTCCTTTTCTCTTTTGATTAGTTGGTTCAAGGATCTGTCAATC  300

seq1  TTGTTTATTTTCTGAAAAAATAACTCTTATTTGGTTACTCATTTGCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTTTCTGAAAAAATAACTCTTATTTGGTTACTCATTTGCATTA  350

seq1  TATACTTTGTTTCTATTTCATTGATTTCTACTCTGATTTTTATATTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTGTTTCTATTTCATTGATTTCTACTCTGATTTTTATATTTTCC  400

seq1  TGACATCTGCTGGGTTTAGATTTGGTTTGTTTTAGTTTTTAAAAATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTGCTGGGTTTAGATTTGGTTTGTTTTAGTTTTTAAAAATTTGA  450

seq1  ACTATGCCATTAAGTCTTTAATTTGTGTTCTTTCTTATTTTTAATGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCATTAAGTCTTTAATTTGTGTTCTTTCTTATTTTTAATGTCCT  500

seq1  TTTAAAGTATAGATGTCCATCAACTGATAAATAAAAAATACCAATAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTATAGATGTCCATCAACTGATAAATAAAAAATACCAATAGAAA  550

seq1  AGCCTTATTTTCCAAAAACTACAATATAAAATTTATAGGGAAGTTAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATTTTCCAAAAACTACAATATAAAATTTATAGGGAAGTTAATGG  600

seq1  AACTGAAGATAATCATGTTAAGAAAAATACTAAACTAGACTAAAAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGATAATCATGTTAAGAAAAATACTAAACTAGACTAAAAATTTG  650

seq1  CATATCACATACTTCCTTTCATATGAGTAAACAAGATTTTCTCACTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACATACTTCCTTTCATATGAGTAAACAAGATTTTCTCACTTTGT  700

seq1  TTTATTTTAAAATAATATTAATAAGCTTATTCTTTGACTCTTTATACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAAATAATATTAATAAGCTTATTCTTTGACTCTTTATACACA  750

seq1  CATACACACAGTGAATTCTCATTATTGTTACATGGATTGAAGTCTGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACAGTGAATTCTCATTATTGTTACATGGATTGAAGTCTGCTCA  800

seq1  TTGAAGAATTATCAGCTAACATAC--ATATATATGCAAATGAATACCATA  848
      ||||||||||||||||||||||||   | |||||||||||||||||||||
seq2  TTGAAGAATTATCAGCTAACATACCATTTTATATGCAAATGAATACCATA  850

seq1  TTTCTCTTTTTGTGTCTCAGTTGCCTAAGTCAGGATGAATTTTTTAATG-  897
      |||||||||||||||||||||||||||||||| |||||| ||||||||| 
seq2  TTTCTCTTTTTGTGTCTCAGTTGCCTAAGTCAAGATGAA-TTTTTAATGC  899

seq1  CCACCAATTT-ACATGAGAATTTCATGATTTCATTATTTTTACATCTGAC  946
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  CCACCAATTTCACATGAG-ATTTCATGATTTCATTATTTTTACATCTGAC  948

seq1  TAATATTC-TGTTGTCTACAT-ATACCAACATTTTTGTTCATTCATTGAT  994
      |||||||| |||||||||||| ||||||||| ||||||||| ||| ||||
seq2  TAATATTCTTGTTGTCTACATAATACCAACA-TTTTGTTCA-TCA-TGAT  995

seq1  GGGCATCTAGGCTGTTTCCAGATTATG-TTTCTGGCTA-TTATGAATAGA  1042
      ||||||||| |||||||||||| |||| |||||||||| ||||||| |||
seq2  GGGCATCTA-GCTGTTTCCAGAATATGTTTTCTGGCTATTTATGAAAAGA  1044

seq1  ACAGCAAATACCATGGTTGAATAGTATCTC--TGAACAGTAGG-ATGTGG  1089
      ||||| |||||||| | |||||||  ||||   |||||||||| ||||||
seq2  ACAGC-AATACCAT-GCTGAATAGATTCTCCTGGAACAGTAGGAATGTGG  1092

seq1  AGTACTTTGGATATATGGTTAAGACTCATATAGCTGAATCTTGAGGTATA  1139
      ||||||||| |||||  ||||  ||||  |||||||||   ||| ||| |
seq2  AGTACTTTGAATATAATGTTAGAACTCTAATAGCTGAACTCTGA-GTA-A  1140

seq1  TCTG-TCTCAGCTTTCTGGGAAACTTCACATTAGTTTCTTTAGTGGCTAT  1188
      |||| |||||||||||  || ||| || || ||| |||| ||||||||||
seq2  TCTGTTCTCAGCTTTC--GGGAACCTCCCAATAG-TTCTATAGTGGCTAT  1187


| Home | SequenceCutter | Blast | Download |