BAC Information

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BAC

Clone NameB6Ng01-334D07
Chromosome13 (Build37)
Map Location 13,329,556 - 13,532,252
singlet/doubletdoublet
Overlap geneLOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
Upstream geneMtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611
Downstream geneLyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334D07.bB6Ng01-334D07.g
ACCGA119768GA119769
length9291,111
definitionB6Ng01-334D07.b B6Ng01-334D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,531,326 - 13,532,252)(13,329,556 - 13,330,411)
sequence
gaattccttgaccccagaggtccgtgggccacacttgggagattgcctct
ttggagcattatcaaggatagctgttattttcagaactctaaaattatct
taattctgtttgcttactgagagagtttcttgtaccccaggatatcctca
aactcaaacccgagatcctcttactcctccctcctcggtgctgagagtgc
acgcctacaccaccacctccagtccatgtatgtatttatttactctttcc
ctttgtaaaccaaggtctccagccttccttcctctcccagactgttagct
tgaagcttgagtgtctgctagacacaggatactctccatctggtttcctt
gggggcttccggcaccagagttaaatcaggcccttgacccctagctctgt
ctggcttgtttggtctggtgctttgcttgtttggggagtttttaaaatta
ggaggagtgaggggacacacaggataacttggatgagtcaggtttttttc
ttccactatgtgggtcctagggatgggggtatgaaattaggttgtcagga
ttgacaaataaagtgccttttacccagtgagtcacctcacaggctatttc
ctggcttttaaagacaaactccacagtccaggctggcctgactccagaac
ttcctagccttacctcccaagtgtgggatttcaggcaagtaccactatgg
cccctactcatattctcgcctcgtgtggaatctgacagacactattgata
cacttcagatcacttctcagatccaccctttttaatagttaccaaaccca
ttgctccagcttccactacacatagtgtggtttaaaaggaaacaagaggg
gccagtatatagtgcagtttggtagagttcttatctgttcatgcaggaag
tcctggttttgattcctacctcctcccta
gaattcccttgtgtacatgtaccacattttgtcagttcatcagttaagga
tattaaggctgtttctatttcttcagtacagggaaagaagtagtgacaaa
catgcccaaggaagtacttgcaaagttgatgttgtgtcttttgggaaaat
gtgaagcagtggtatacctgggtcacatggtatatttattttgatgtcta
cacactgattcctacagtgacaaaagcagtttgcaatttcactaatgatc
agcagaggtttatcttttcccatatctttgccagcatttgtcctcaactg
ttttcttgatctcagttataaatattgggatgatacgaaacagtagcttg
gttttaatttgcatttctctaattggcaatgatgttgactaactcttgag
atgtttatgagtcatctttaatttcttcatttgaaaaatctccattcata
accctatctaattttattggatttttgttgttgttgttgttgttgttgcc
tcttttgtttttgaagtccattctgtgttctgggtagtaattctttgctg
gatgaatagctatcaatttctctcccatggtagataacatatgaatgcag
tacctcaggtggccagaagagggcatccaacgttctagaactggacttaa
agatggttgtgatcagctatgtgtttataggacactaaaacttggtcttc
tggaagaccagaaaatatcctcaacatcagctatcagtctagctcctctg
ccaggtggtttaaaaattttttttgtggcataatatctgtacttcatctt
caaatcctaatattctttcttctactctacttaatgctttccatttgctt
ttgtaaaggggttatagaatttttcaattccatactaatttcttattatt
tgtgtcttgatgatgagacatcagcattttttatttctttcctccaacga
gtgcccttgtattagagtctagctgtttaacagcaagtcaattgtacact
tctgtgaggcatgggttgtggttttgctatgccatggaagatgtggttta
agaacttattctaggctggccatataacatagaacatatgtcaaggggca
aacctacatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13531326_13532252
seq2: B6Ng01-334D07.b_47_975 (reverse)

seq1  TAGGGAGGAGTTAGGAATCAAAACCAGGACTTCCTGCATG-ACAGATAAG  49
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TAGGGAGGAGGTAGGAATCAAAACCAGGACTTCCTGCATGAACAGATAAG  50

seq1  AACTCTACC-AACTGCACTATATACTGGCCCCTCTTGTTTCCTTTTAAAC  98
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACCAAACTGCACTATATACTGGCCCCTCTTGTTTCCTTTTAAAC  100

seq1  CACACTATGTGTAGTGGAAGCTGGAGCAATGGGTTTGGTAACTATTAAAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATGTGTAGTGGAAGCTGGAGCAATGGGTTTGGTAACTATTAAAA  150

seq1  AGGGTGGATCTGAGAAGTGATCTGAAGTGTATCAATAGTGTCTGTCAGAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGATCTGAGAAGTGATCTGAAGTGTATCAATAGTGTCTGTCAGAT  200

seq1  TCCACACGAGGCGAGAATATGAGTAGGGGCCATAGTGGTACTTGCCTGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACGAGGCGAGAATATGAGTAGGGGCCATAGTGGTACTTGCCTGAA  250

seq1  ATCCCACACTTGGGAGGTAAGGCTAGGAAGTTCTGGAGTCAGGCCAGCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACACTTGGGAGGTAAGGCTAGGAAGTTCTGGAGTCAGGCCAGCCT  300

seq1  GGACTGTGGAGTTTGTCTTTAAAAGCCAGGAAATAGCCTGTGAGGTGACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGGAGTTTGTCTTTAAAAGCCAGGAAATAGCCTGTGAGGTGACT  350

seq1  CACTGGGTAAAAGGCACTTTATTTGTCAATCCTGACAACCTAATTTCATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTAAAAGGCACTTTATTTGTCAATCCTGACAACCTAATTTCATA  400

seq1  CCCCCATCCCTAGGACCCACATAGTGGAAGAAAAAAACCTGACTCATCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCCCTAGGACCCACATAGTGGAAGAAAAAAACCTGACTCATCCA  450

seq1  AGTTATCCTGTGTGTCCCCTCACTCCTCCTAATTTTAAAAACTCCCCAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCCTGTGTGTCCCCTCACTCCTCCTAATTTTAAAAACTCCCCAAA  500

seq1  CAAGCAAAGCACCAGACCAAACAAGCCAGACAGAGCTAGGGGTCAAGGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAGCACCAGACCAAACAAGCCAGACAGAGCTAGGGGTCAAGGGC  550

seq1  CTGATTTAACTCTGGTGCCGGAAGCCCCCAAGGAAACCAGATGGAGAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTAACTCTGGTGCCGGAAGCCCCCAAGGAAACCAGATGGAGAGTA  600

seq1  TCCTGTGTCTAGCAGACACTCAAGCTTCAAGCTAACAGTCTGGGAGAGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTCTAGCAGACACTCAAGCTTCAAGCTAACAGTCTGGGAGAGGA  650

seq1  AGGAAGGCTGGAGACCTTGGTTTACAAAGGGAAAGAGTAAATAAATACAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCTGGAGACCTTGGTTTACAAAGGGAAAGAGTAAATAAATACAT  700

seq1  ACATGGACTGGAGGTGGTGGTGTAGGCGTGCACTCTCAGCACCGAGGAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGACTGGAGGTGGTGGTGTAGGCGTGCACTCTCAGCACCGAGGAGG  750

seq1  GAGGAGTAAGAGGATCTCGGGTTTGAGTTTGAGGATATCCTGGGGTACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTAAGAGGATCTCGGGTTTGAGTTTGAGGATATCCTGGGGTACAA  800

seq1  GAAACTCTCTCAGTAAGCAAACAGAATTAAGATAATTTTAGAGTTCTGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTCTCAGTAAGCAAACAGAATTAAGATAATTTTAGAGTTCTGAA  850

seq1  AATAACAGCTATCCTTGATAATGCTCCAAAGAGGCAATCTCCCAAGTGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGCTATCCTTGATAATGCTCCAAAGAGGCAATCTCCCAAGTGTG  900

seq1  GCCCACGGACCTCTGGGGTCAAGGAATTC  927
      |||||||||||||||||||||||||||||
seq2  GCCCACGGACCTCTGGGGTCAAGGAATTC  929

seq1: chr13_13329556_13330411
seq2: B6Ng01-334D07.g_316_1176

seq1  AGCAGAGGTTTATCTTTTCCCATATCTTTGCCAGCATTTGTCCTCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGTTTATCTTTTCCCATATCTTTGCCAGCATTTGTCCTCAACTG  50

seq1  TTTTCTTGATCTCAGTTATAAATATTGGGATGATACGAAACAGTAGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGATCTCAGTTATAAATATTGGGATGATACGAAACAGTAGCTTG  100

seq1  GTTTTAATTTGCATTTCTCTAATTGGCAATGATGTTGACTAACTCTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATTTGCATTTCTCTAATTGGCAATGATGTTGACTAACTCTTGAG  150

seq1  ATGTTTATGAGTCATCTTTAATTTCTTCATTTGAAAAATCTCCATTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGAGTCATCTTTAATTTCTTCATTTGAAAAATCTCCATTCATA  200

seq1  ACCCTATCTAATTTTATTGGATTTTTGTTGTTGTTGTTGTTGTTGTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATCTAATTTTATTGGATTTTTGTTGTTGTTGTTGTTGTTGTTGCC  250

seq1  TCTTTTGTTTTTGAAGTCCATTCTGTGTTCTGGGTAGTAATTCTTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTTTTGAAGTCCATTCTGTGTTCTGGGTAGTAATTCTTTGCTG  300

seq1  GATGAATAGCTATCAATTTCTCTCCCATGGTAGATAACATATGAATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATAGCTATCAATTTCTCTCCCATGGTAGATAACATATGAATGCAG  350

seq1  TACCTCAGGTGGCCAGAAGAGGGCATCCAACGTTCTAGAACTGGACTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGGTGGCCAGAAGAGGGCATCCAACGTTCTAGAACTGGACTTAA  400

seq1  AGATGGTTGTGATCAGCTATGTGTTTATAGGACACTAAAACTTGGTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGTGATCAGCTATGTGTTTATAGGACACTAAAACTTGGTCTTC  450

seq1  TGGAAGACCAGAAAATATCCTCAACATCAGCTATCAGTCTAGCTCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGACCAGAAAATATCCTCAACATCAGCTATCAGTCTAGCTCCTCTG  500

seq1  CCAGGTGGTTTAAAAATTTTTTTTGTGGCATAATATCTGTACTTCATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGTTTAAAAATTTTTTTTGTGGCATAATATCTGTACTTCATCTT  550

seq1  CAAATCCTAATATTCTTTCTTCTACTCTACTTAATGCTTTCCATTTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTAATATTCTTTCTTCTACTCTACTTAATGCTTTCCATTTGCTT  600

seq1  TTGTAAAGGGGTTATAGAATTTTTCAATTCCATACTAATTTCTTATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGGGGTTATAGAATTTTTCAATTCCATACTAATTTCTTATTATT  650

seq1  TGTGTCTTGATGATGAGACATCAGCA-TTTTTATTTCTTTCCTCCAACGA  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTGTCTTGATGATGAGACATCAGCATTTTTTATTTCTTTCCTCCAACGA  700

seq1  GTGCCC-TGTATTAGAGTCTAGGCTGTTTAACAGCAGGTCAA-TGTACAC  747
      |||||| |||||||||||||| |||||||||||||| ||||| |||||||
seq2  GTGCCCTTGTATTAGAGTCTA-GCTGTTTAACAGCAAGTCAATTGTACAC  749

seq1  -TCTGTGAGGCATGGGTTGTGGTTTTGCTATGCCATTGGAAGATGTGGTT  796
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTGTGAGGCATGGGTTGTGGTTTTGCTATGCCA-TGGAAGATGTGGTT  798

seq1  TTAAGACCTA-TCTAGGCTGGCTATAT-ACATAG-ACATATGTCAGGGGC  843
      | |  || || ||||||||||| |||| |||||| |||||||||| ||| 
seq2  TAAGAACTTATTCTAGGCTGGCCATATAACATAGAACATATGTCAAGGGG  848

seq1  AAAACCTACATGT  856
       ||||||||||||
seq2  CAAACCTACATGT  861