BAC Information

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BAC

Clone NameB6Ng01-334L17
Chromosome13 (Build37)
Map Location 7,301,262 - 7,465,496
singlet/doubletdoublet
Overlap geneLOC667611, EG623516
Upstream geneLOC100039395, Pitrm1, Pfkp, LOC100039532
Downstream geneLOC791083, LOC382722, Adarb2, EG666941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334L17.bB6Ng01-334L17.g
ACCGA120164GA120165
length1,180690
definitionB6Ng01-334L17.b B6Ng01-334L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,301,262 - 7,302,467)(7,464,958 - 7,465,496)
sequence
gaattcttgagggaagaaaacagcacctccttctactgacatcagtttct
ctgtctttacccaagttccttgtaataaagaataacaaatggcatcatag
tgcctaacaggatctcagtgtgtataagaggcagacatggcagcaagcat
tagattttaaataaacacaccaaacaatcacaattttgttcttacaaaga
tgtattgaacagcattgccctttaggggctatggaggatagaactgagct
actaaaaatggaaatttattcctctacacatatagctatttaaataggga
atattctgatttctctaaggtttttctggataattttatcagtttatgac
cctaatacttcaaggctaaatactagactcctgcttttacttctttagga
caatttggagcaggtcaccattcctgttgaccaattcctatattacacag
gaccttgttagttgacatgatagaaagcatagaccatgatctagcagcag
cagatattgcttagctgtatttactaacaatgaagcaaagccaccaacaa
tgtttatgaaattttctttagtgatattttaatatttttgaaatgcaagc
aaatatttatggctgtgctttgggtacttctccagtttcttgtgaactga
atgtctgacacgatgcttgatgaagtgtgccaaggtctgtaaatgtgaaa
ttcctatagtagcaacatatctatgataatactgaagaaccccaatctat
taccagaggcaacaatattaagccttgctaattttctatacccttgagct
aaaaaattatttaaggcaagaaaaagagtgattttatgtatacaagcttt
aagcccaatcataactcaaactcatatttctcatacacctatatttttac
tttaagaaacttttcttttggagcactgtttcatactagaaagttttatg
gtaagcataattttgtttagtaagtgtgtctcgatgcattttgttcattt
tcagtatatgcaataagctttgtctcatttaatctttatgttattaaatt
tcactgacattacttatttgtcacattatgacatctttatgtcatatagc
tagttctactagcacattgagtttaagatacaattctttttggcagcgta
acctaggaacctgaattttagtcttaggaa

gaattcatatttaatatgtgtattgcctcttgttaaaattgaatatttaa
aaataagttcattcgacttccttattattctgaaaaaaaatgtgattaat
aactaagtcaccaaatattctttgagttgttgaatttaacaagatgtagt
ttattatgtttgtaattaaattatttttgtggaaacttaaaaaatataga
cattttctcagtgtgttcctagatagtaaacccttttaacctttcattta
aaatcattttattacataccaattagaaatgatgagtttcattgtgacat
tttcattcatatagataatatacttgatcatattcactcctgtgattact
ctcttttaacccctttgactcctactggcccctgttatttccccaactag
ttccaaagagctttaatgtctatttcttttacattgtgagtcacattagg
actgcttacaggagcatgggagagatggtaacaggaacaatggcacctta
gcattgtctgtccctcccctagcttctattaagtccctgtaagtcctgta
agtgttggagcatggaaaccttccttactcgatgacagaatgcttgtggg
ttggtaggccagccttgtacagacatccttagttgccttgagttcaaaag
ttctcttttattaatggggtttctttgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_7301262_7302467
seq2: B6Ng01-334L17.b_45_1224

seq1  GAATTCTTGAGGGAAGAAAACAGCACCTCCTTCTACTGACATCAGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGGAAGAAAACAGCACCTCCTTCTACTGACATCAGTTTCT  50

seq1  CTGTCTTTACCCAAGTTCCTTGTAATAAAGAATAACAAATGGCATCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTACCCAAGTTCCTTGTAATAAAGAATAACAAATGGCATCATAG  100

seq1  TGCCTAACAGGATCTCAGTGTGTATAAGAGGCAGACATGGCAGCAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAACAGGATCTCAGTGTGTATAAGAGGCAGACATGGCAGCAAGCAT  150

seq1  TAGATTTTAAATAAACACACCAAACAATCACAATTTTGTTCTTACAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTAAATAAACACACCAAACAATCACAATTTTGTTCTTACAAAGA  200

seq1  TGTATTGAACAGCATTGCCCTTTAGGGGCTATGGAGGATAGAACTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGAACAGCATTGCCCTTTAGGGGCTATGGAGGATAGAACTGAGCT  250

seq1  ACTAAAAATGGAAATTTATTCCTCTACACATATAGCTATTTAAATAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATGGAAATTTATTCCTCTACACATATAGCTATTTAAATAGGGA  300

seq1  ATATTCTGATTTCTCTAAGGTTTTTCTGGATAATTTTATCAGTTTATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGATTTCTCTAAGGTTTTTCTGGATAATTTTATCAGTTTATGAC  350

seq1  CCTAATACTTCAAGGCTAAATACTAGACTCCTGCTTTTACTTCTTTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATACTTCAAGGCTAAATACTAGACTCCTGCTTTTACTTCTTTAGGA  400

seq1  CAATTTGGAGCAGGTCACCATTCCTGTTGACCAATTCCTATATTACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGGAGCAGGTCACCATTCCTGTTGACCAATTCCTATATTACACAG  450

seq1  GACCTTGTTAGTTGACATGATAGAAAGCATAGACCATGATCTAGCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTTAGTTGACATGATAGAAAGCATAGACCATGATCTAGCAGCAG  500

seq1  CAGATATTGCTTAGCTGTATTTACTAACAATGAAGCAAAGCCACCAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTGCTTAGCTGTATTTACTAACAATGAAGCAAAGCCACCAACAA  550

seq1  TGTTTATGAAATTTTCTTTAGTGATATTTTAATATTTTTGAAATGCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGAAATTTTCTTTAGTGATATTTTAATATTTTTGAAATGCAAGC  600

seq1  AAATATTTATGGCTGTGCTTTGGGTACTTCTCCAGTTTCTTGTGAACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATGGCTGTGCTTTGGGTACTTCTCCAGTTTCTTGTGAACTGA  650

seq1  ATGTCTGACACGATGCTTGATGAAGTGTGCCAAGGTCTGTAAATGTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGACACGATGCTTGATGAAGTGTGCCAAGGTCTGTAAATGTGAAA  700

seq1  TTCCTATAGTAGCAACATATCTATGATAATACTGAAGAACCCCAATCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATAGTAGCAACATATCTATGATAATACTGAAGAACCCCAATCTAT  750

seq1  TACCAGAGGCAACAATATTAAGCCTTGCTAATTTTCTATACCCTTGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGGCAACAATATTAAGCCTTGCTAATTTTCTATACCCTTGAGCT  800

seq1  AAAAAATTATTTAAGGCAAGAAAAAGAGTGATTTTATGTATACAAGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTATTTAAGGCAAGAAAAAGAGTGATTTTATGTATACAAGCTTT  850

seq1  AAGCCCAATCATAACTCAAACTCATATTTCTCATACACCTATATTTTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAATCATAACTCAAACTCATATTTCTCATACACCTATATTTTTAC  900

seq1  TTTAAGAAACTTTTCTTTTGGAGCACTGTTTCATACTAGAAAGTTTTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAACTTTTCTTTTGGAGCACTGTTTCATACTAGAAAGTTTTATG  950

seq1  GTAAGCATAATTTTGTTTAGTAAGTGTGTCTCGATGCATTTTGTTCATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATAATTTTGTTTAGTAAGTGTGTCTCGATGCATTTTGTTCATTT  1000

seq1  TCAAGTAATAATGCAAATAAGCTTTGTCTCATTTAATCTTTATGTTATTA  1050
      || ||||   |||| |||||||||||||||||||||||||||||||||||
seq2  TC-AGTA--TATGC-AATAAGCTTTGTCTCATTTAATCTTTATGTTATTA  1046

seq1  AATTTCAACTGACATTAACTTATTTGTCACATTAATTGACAATCTTTAAT  1100
      |||||| ||||||||| |||||||||||||||||  |||| |||||| ||
seq2  AATTTC-ACTGACATT-ACTTATTTGTCACATTA--TGAC-ATCTTT-AT  1090

seq1  GTCCATATTAGCTAGTTCTACTTAGCACATTTGAGGTTTAGGAATTACAA  1150
      || |||| ||||||||||||| ||||||| |||| ||||| ||  ||| |
seq2  GT-CATA-TAGCTAGTTCTAC-TAGCACA-TTGA-GTTTAAGA--TAC-A  1132

seq1  ATTCTTTTTGGAAAGCAGTAAACACTAAGAAAACTGAATATTTTAGTCTT  1200
      |||||||||||  ||| |||   ||  || || ||||  ||||||||| |
seq2  ATTCTTTTTGG-CAGC-GTA---ACCTAGGAACCTGA--ATTTTAGTC-T  1174

seq1  TAGGAA  1206
      ||||||
seq2  TAGGAA  1180


seq1: chr13_7464958_7465496
seq2: B6Ng01-334L17.g_219_757 (reverse)

seq1  ACACACACACACACAAAGAAACCCCATTAATAAAAGAGAACTTTTGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAAAGAAACCCCATTAATAAAAGAGAACTTTTGAACT  50

seq1  CAAGGCAACTAAGGATGTCTGTACAAGGCTGGCCTACCAACCCACAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAACTAAGGATGTCTGTACAAGGCTGGCCTACCAACCCACAAGCA  100

seq1  TTCTGTCATCGAGTAAGGAAGGTTTCCATGCTCCAACACTTACAGGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCATCGAGTAAGGAAGGTTTCCATGCTCCAACACTTACAGGACTT  150

seq1  ACAGGGACTTAATAGAAGCTAGGGGAGGGACAGACAATGCTAAGGTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACTTAATAGAAGCTAGGGGAGGGACAGACAATGCTAAGGTGCCA  200

seq1  TTGTTCCTGTTACCATCTCTCCCATGCTCCTGTAAGCAGTCCTAATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTGTTACCATCTCTCCCATGCTCCTGTAAGCAGTCCTAATGTGA  250

seq1  CTCACAATGTAAAAGAAATAGACATTAAAGCTCTTTGGAACTAGTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATGTAAAAGAAATAGACATTAAAGCTCTTTGGAACTAGTTGGGG  300

seq1  AAATAACAGGGGCCAGTAGGAGTCAAAGGGGTTAAAAGAGAGTAATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAGGGGCCAGTAGGAGTCAAAGGGGTTAAAAGAGAGTAATCACA  350

seq1  GGAGTGAATATGATCAAGTATATTATCTATATGAATGAAAATGTCACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAATATGATCAAGTATATTATCTATATGAATGAAAATGTCACAAT  400

seq1  GAAACTCATCATTTCTAATTGGTATGTAATAAAATGATTTTAAATGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCATCATTTCTAATTGGTATGTAATAAAATGATTTTAAATGAAAG  450

seq1  GTTAAAAGGGTTTACTATCTAGGAACACACTGAGAAAATGTCTATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGGGTTTACTATCTAGGAACACACTGAGAAAATGTCTATATTTT  500

seq1  TTAAGTTTCCACAAAAATAATTTAATTACAAACATAATA  539
      |||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCCACAAAAATAATTTAATTACAAACATAATA  539


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