BAC Information

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BAC

Clone NameB6Ng01-335F14
Chromosome13 (Build37)
Map Location 78,954,422 - 78,955,482
singlet/doubletsinglet
Overlap genenone
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneEG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335F14.bB6Ng01-335F14.g
ACCGA120608GA120609
length1,1801,058
definitionB6Ng01-335F14.b B6Ng01-335F14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtaagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccaatgttggtg
ggattgcaagcttttacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccagaggatccagccatacctctcctgggc
atatatccagaagatgtcccaacgggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gccccgcaacagaggaatggatacaaataatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcgcaggcaa
atggatggacctggagggcattatcctgagtgaggtaacacaatcacaga
agaactccaatgatatatactcactgataagtggatattagcccagaaac
ttagtataccagagatataagatacaatttgcaaaacacatgaaactgaa
gaagaacaaagaccaaagtgaggacactttgccccttcttagaattggaa
acaatcactcatggaaggatttacagagaaaaagtttggagctgagacaa
aaggatggaccatctagagactgccatatccggagatccatcccataatt
agcctccaaacgatgacaccattgcatacactagcaagattttgctgaaa
ggaccctgatatagctgtctcttgtgagactaggccggggcctagcaaac
acataagtagatgctcatagtcaactattggatggatcacagggccccca
atggagagctagagaaagtatccaaagagctaaagagatctgcacccctg
tagtgtaacacatatgactaccagtaccccggagctcttgaagctagctg
catgtgtatcaaaagatgggccctagtcgcaatcactgggaagagagagg
tccatggacatgcacctttaatatgcccagtcaggtaatgccaggccaaa
tggattggtgtgataagggcaagtcggtga
gaattctttctcatctcatccctagacctctgtggcatggattcatgcag
tgttctgatgctcagtgataaggcacaagagattaggtgagttctgaact
gaatcgtgctctttctttttagttgcctaggaggaagagatctttagaaa
aaaacgtttcagaaaaacactcttctgtgttgatgcgtggtttatttctg
cttttctttttacacaaggtgacagtgttgtaagacgtgaagatgagttt
gctcaggcaattgccccttgttgataggagattatttcctctggcaaact
caaaaataacttgttggtgtataagttactgctgttctgttatttagtat
tttgctctctgtctttttaaaaaaataagcatatgtattttaatcagtac
acctctgaatgactccttttcatcctgaatcactgacttctggagttgta
tatcttgtaacacataaggaagaaggtcctgggtagacaggtgcattcct
ggaggtgaaaatgttcttagcaaaagaaatcgtaccctaggatctggttt
tttttttccttaacatcctaaaaccatagcatttattttctacaactcta
gtcctagtacaaattatttttctagaacaatgaccttgatgaaaagttca
catctgtcttgtctagcagaggaacacagtatactctcctccactggggg
agttgacatcatacaactgatgtaggttgaaggagaacatgaaagaatgc
aggttagagccttctatgcaactcttaagagatataccagataatacatc
tctgccagcctagtctacagagtgagttccaggacagcaggaccatctgg
gctatactgtgaaaccctgtctcgaaaaaataaaagaagtttagggaaaa
gatagaacagagattgagggaaaagccaacaaagactggccaaacttaga
ttcatccaatgggcaggaaacatctcgacactattagtgatactgggcta
cgccatgtagacaggaggcatactgcctctgagaggcctccacacagcag
cttgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_78954422_78955482
seq2: B6Ng01-335F14.g_66_1123 (reverse)

seq1  CAGTC-AGCTGCTGTGTGGA-GCCTCTCAGAAGGCAGTAATGCCTCTTGT  48
      ||||| |||||||||||||| ||||||||| ||||||| ||||||| |||
seq2  CAGTCAAGCTGCTGTGTGGAGGCCTCTCAG-AGGCAGT-ATGCCTCCTGT  48

seq1  CTACAT-GCGTAGCCCAGTATCACTAATAGTGTCGAGATTGTTTCCTGCC  97
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  CTACATGGCGTAGCCCAGTATCACTAATAGTGTCGAGA-TGTTTCCTGCC  97

seq1  CATTGGATGAATCTTAAGTTTGGCCAGTCTTTGTTGGCTTTTCCCTCAAT  147
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATTGGATGAATC-TAAGTTTGGCCAGTCTTTGTTGGCTTTTCCCTCAAT  146

seq1  CTCTGTTCTATCTTTTTCCCTAAACTTCTTTTATTTTTTTCGAGACAGGG  197
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  CTCTGTTCTATC-TTTTCCCTAAACTTCTTTTA-TTTTTTCGAGACAGGG  194

seq1  TTTCACAGTATAGCCCAGATGGTCCTGCTGTCCTGGAACTCACTCTGTAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGTATAGCCCAGATGGTCCTGCTGTCCTGGAACTCACTCTGTAG  244

seq1  ACTAGGCTGGCAGAGATGTATTATCTGGTATATCTCTTAAGAGTTGCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCTGGCAGAGATGTATTATCTGGTATATCTCTTAAGAGTTGCATA  294

seq1  GAAGGCTCTAACCTGCATTCTTTCATGTTCTCCTTCAACCTACATCAGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCTAACCTGCATTCTTTCATGTTCTCCTTCAACCTACATCAGTT  344

seq1  GTATGATGTCAACTCCCCCAGTGGAGGAGAGTATACTGTGTTCCTCTGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATGTCAACTCCCCCAGTGGAGGAGAGTATACTGTGTTCCTCTGCT  394

seq1  AGACAAGACAGATGTGAACTTTTCATCAAGGTCATTGTTCTAGAAAAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGACAGATGTGAACTTTTCATCAAGGTCATTGTTCTAGAAAAATA  444

seq1  ATTTGTACTAGGACTAGAGTTGTAGAAAATAAATGCTATGGTTTTAGGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACTAGGACTAGAGTTGTAGAAAATAAATGCTATGGTTTTAGGAT  494

seq1  GTTAAGGAAAAAAAAAACCAGATCCTAGGGTACGATTTCTTTTGCTAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGAAAAAAAAAACCAGATCCTAGGGTACGATTTCTTTTGCTAAGA  544

seq1  ACATTTTCACCTCCAGGAATGCACCTGTCTACCCAGGACCTTCTTCCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCACCTCCAGGAATGCACCTGTCTACCCAGGACCTTCTTCCTTA  594

seq1  TGTGTTACAAGATATACAACTCCAGAAGTCAGTGATTCAGGATGAAAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTACAAGATATACAACTCCAGAAGTCAGTGATTCAGGATGAAAAGG  644

seq1  AGTCATTCAGAGGTGTACTGATTAAAATACATATGCTTATTTTTTTAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCAGAGGTGTACTGATTAAAATACATATGCTTATTTTTTTAAAA  694

seq1  AGACAGAGAGCAAAATACTAAATAACAGAACAGCAGTAACTTATACACCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAGCAAAATACTAAATAACAGAACAGCAGTAACTTATACACCA  744

seq1  ACAAGTTATTTTTGAGTTTGCCAGAGGAAATAATCTCCTATCAACAAGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTATTTTTGAGTTTGCCAGAGGAAATAATCTCCTATCAACAAGGG  794

seq1  GCAATTGCCTGAGCAAACTCATCTTCACGTCTTACAACACTGTCACCTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGCCTGAGCAAACTCATCTTCACGTCTTACAACACTGTCACCTTG  844

seq1  TGTAAAAAGAAAAGCAGAAATAAACCACGCATCAACACAGAAGAGTGTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGAAAAGCAGAAATAAACCACGCATCAACACAGAAGAGTGTTT  894

seq1  TTCTGAAACGTTTTTTTCTAAAGATCTCTTCCTCCTAGGCAACTAAAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACGTTTTTTTCTAAAGATCTCTTCCTCCTAGGCAACTAAAAAG  944

seq1  AAAGAGCACGATTCAGTTCAGAACTCACCTAATCTCTTGTGCCTTATCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCACGATTCAGTTCAGAACTCACCTAATCTCTTGTGCCTTATCAC  994

seq1  TGAGCATCAGAACACTGCATGAATCCATGCCACAGAGGTCTAGGGATGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATCAGAACACTGCATGAATCCATGCCACAGAGGTCTAGGGATGAG  1044

seq1  ATGAGAAAGAATTC  1061
      ||||||||||||||
seq2  ATGAGAAAGAATTC  1058