BAC Information

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BAC

Clone NameB6Ng01-335N23
Chromosome13 (Build37)
Map Location 114,394,581 - 114,519,301
singlet/doubletdoublet
Overlap geneSnag1, Hspb3
Upstream geneDdx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888
Downstream geneEG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335N23.bB6Ng01-335N23.g
ACCGA120964GA120965
length9551,121
definitionB6Ng01-335N23.b B6Ng01-335N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,518,349 - 114,519,301)(114,394,581 - 114,395,730)
sequence
gaattcactcaggagacattggaaaatgctgatatgtaggcacattctcc
cagtgttgttacttagcattgatattttatcagcctattgaattatgtat
tttgtacgtggggaggtagatgcgtacgtcccacagactgtgtgtggaag
atggaggcccagtgttgtttattgggttgcaattttggcattgatatttt
attagcttattgtttattttgtatttggggaggttggtgcatatatccca
caggctgtgtgtggaagacagaggaattaagtctctccttgtatcatgta
gttcctgaggaccaaactcaagttgtcagactgggtggcagggtcttttc
ctgctaggccatcttgctaatctgcaatagatatgttttgagagctacag
ataataggacaataatcaaagtcgggcactattactgaactaaattctct
ctacgctttcttctagctctatatttccatgtaaattatgctcaatttaa
aataaatagggtgcttgttttttaatcctataatagaaaattacatgtgg
gttttaaaaaaaaaatagaagcttcccggaaaacacacttgaaacaatta
tttggagcattattctaggttgacttgatgtacttctcttaggagtttgg
ccgtgttgttataaatcacgagtttaagctagaaacaaggaaaaggttgt
gtgtgtgtatacttgttttggaatctgattacagccttgtatcaaagctt
ggccatctgcccacggacctgcatggggtgacctcactgagtaacccaag
ctgtaagtttatggaactctcagtgggaggtcctttgggcggctggtttg
gagcaacacactattgcctgagttggtatcttccctggattagacaaata
aagtctctggccaaagcattttgtcccaaagctaccacaagaaacgggtc
cagga
gaattccatttaaagaattccattctctaagttcggtttggccctaaaaa
taaaaaagaagttgcttgttggtggtacaaaagccctgctacagcctgat
ggccgctagcagagctttgctggctcagctgcaccccagtgaccgaggtc
cacgaggtccacaggtagaaggaccctagtgcacatgagaacatcaggag
gcacactcactaactcactaactgctccgtttgcctccttccccatgaag
cccagagccatggggcccttgaagttgttaaacagaatgttcgtagctgg
aacttcataaagattctgatgaagcctgagctcctgagaaatactaaacc
tgggtgaagcagctcagcggggagccacgctcctcgagcaaagcctgagg
tagagctctggaaccaaggaggcctcacagcaccgggctacatacagtac
gcctttacgcctttacgcttttacgcctttactttggaagaccaggttcc
gggctgagcaccctctacatcaacaaatacagataaagactttaaaactc
tgagtataaaaaaggcaaagcaagtattatttcttttcttgagtgttttc
tggccacacaatcccactaagccgtgccagccagctgcccacacttacat
ttagcagaccctccccaaacaacgccaggaatggttggctaccagtgaga
agtggactcagaaagtacttttaattggagtaaaatcttggtttcttttg
ttctgggaagataaaatggagcttgggctaaaaccgaatctctacagcct
gctaaacagaggagacactccccacggggcaggccagatctagtgggaag
ctggaagcccagagccaaggcctcccaggaggcagggctgtgaagctccc
aggagggcagtgctaacctggaaccacagagtagttccagaggatgtatt
ttgctgtctagtatttttctctcagagtgtccagctatagctgagtacac
cccaccacacaggaagcgctcagtctgctcttcctcttcactgtgccact
catggaggtgcttctgctcaccacttgagagaatcactagatggaaggga
agcatcctaagtcagccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_114518349_114519301
seq2: B6Ng01-335N23.b_48_1002 (reverse)

seq1  TCCTGGACCCGTTTC-TGTGGTAGCTTTGAGACAAAATGCCTTGGCCAGA  49
      ||||||||||||||| ||||||||||||| |||||||||| |||||||||
seq2  TCCTGGACCCGTTTCTTGTGGTAGCTTTGGGACAAAATGCTTTGGCCAGA  50

seq1  GACTTTATTTGTCTAATCCCAGGGAAGATACAAACTCA-GCAATAGTGTG  98
      ||||||||||||||||| ||||||||||||| |||||| |||||||||||
seq2  GACTTTATTTGTCTAAT-CCAGGGAAGATACCAACTCAGGCAATAGTGTG  99

seq1  TTGCTCCAAACCAGCCGCCCAAA-GACCTCCCACTGAGAGTTCCATAAAC  147
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGCTCCAAACCAGCCGCCCAAAGGACCTCCCACTGAGAGTTCCATAAAC  149

seq1  TTACAGCTTGGGTTACTCAGTGAGGTCACCCCATGCAGGTCCGTGGGCAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTTGGGTTACTCAGTGAGGTCACCCCATGCAGGTCCGTGGGCAG  199

seq1  ATGGCCAAGCTTTGATACAAGGCTGTAATCAGATTCCAAAACAAGTATAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAAGCTTTGATACAAGGCTGTAATCAGATTCCAAAACAAGTATAC  249

seq1  ACACACACAACCTTTTCCTTGTTTCTAGCTTAAACTCGTGATTTATAACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAACCTTTTCCTTGTTTCTAGCTTAAACTCGTGATTTATAACA  299

seq1  ACACGGCCAAACTCCTAAGAGAAGTACATCAAGTCAACCTAGAATAATGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGCCAAACTCCTAAGAGAAGTACATCAAGTCAACCTAGAATAATGC  349

seq1  TCCAAATAATTGTTTCAAGTGTGTTTTCCGGGAAGCTTCTATTTTTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATAATTGTTTCAAGTGTGTTTTCCGGGAAGCTTCTATTTTTTTTT  399

seq1  TAAAACCCACATGTAATTTTCTATTATAGGATTAAAAAACAAGCACCCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCACATGTAATTTTCTATTATAGGATTAAAAAACAAGCACCCTA  449

seq1  TTTATTTTAAATTGAGCATAATTTACATGGAAATATAGAGCTAGAAGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAATTGAGCATAATTTACATGGAAATATAGAGCTAGAAGAAA  499

seq1  GCGTAGAGAGAATTTAGTTCAGTAATAGTGCCCGACTTTGATTATTGTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGAGAGAATTTAGTTCAGTAATAGTGCCCGACTTTGATTATTGTCC  549

seq1  TATTATCTGTAGCTCTCAAAACATATCTATTGCAGATTAGCAAGATGGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTGTAGCTCTCAAAACATATCTATTGCAGATTAGCAAGATGGCC  599

seq1  TAGCAGGAAAAGACCCTGCCACCCAGTCTGACAACTTGAGTTTGGTCCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAAAAGACCCTGCCACCCAGTCTGACAACTTGAGTTTGGTCCTC  649

seq1  AGGAACTACATGATACAAGGAGAGACTTAATTCCTCTGTCTTCCACACAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTACATGATACAAGGAGAGACTTAATTCCTCTGTCTTCCACACAC  699

seq1  AGCCTGTGGGATATATGCACCAACCTCCCCAAATACAAAATAAACAATAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGGGATATATGCACCAACCTCCCCAAATACAAAATAAACAATAA  749

seq1  GCTAATAAAATATCAATGCCAAAATTGCAACCCAATAAACAACACTGGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAAAATATCAATGCCAAAATTGCAACCCAATAAACAACACTGGGC  799

seq1  CTCCATCTTCCACACACAGTCTGTGGGACGTACGCATCTACCTCCCCACG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTCCACACACAGTCTGTGGGACGTACGCATCTACCTCCCCACG  849

seq1  TACAAAATACATAATTCAATAGGCTGATAAAATATCAATGCTAAGTAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATACATAATTCAATAGGCTGATAAAATATCAATGCTAAGTAACA  899

seq1  ACACTGGGAGAATGTGCCTACATATCAGCATTTTCCAATGTCTCCTGAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGAGAATGTGCCTACATATCAGCATTTTCCAATGTCTCCTGAGT  949

seq1  GAATTC  953
      ||||||
seq2  GAATTC  955

seq1: chr13_114394581_114395730
seq2: B6Ng01-335N23.g_66_1186

seq1  GAATTCCATTTAAAGAATTCCATTCTCTAAGTTCGGTTTGGCCCTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAAAGAATTCCATTCTCTAAGTTCGGTTTGGCCCTAAAAA  50

seq1  TAAAAAAGAAGTTGCTTGTTGGTGGTACAAAAGCCCTGCTACAGCCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAAGTTGCTTGTTGGTGGTACAAAAGCCCTGCTACAGCCTGAT  100

seq1  GGCCGCTAGCAGAGCTTTGCTGGCTCAGCTGCACCCCAGTGACCGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCTAGCAGAGCTTTGCTGGCTCAGCTGCACCCCAGTGACCGAGGTC  150

seq1  CACGAGGTCCACAGGTAGAAGGACCCTAGTGCACATGAGAACATCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGTCCACAGGTAGAAGGACCCTAGTGCACATGAGAACATCAGGAG  200

seq1  GCACACTCACTAACTCACTAACTGCTCCGTTTGCCTCCTTCCCCATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTCACTAACTCACTAACTGCTCCGTTTGCCTCCTTCCCCATGAAG  250

seq1  CCCAGAGCCATGGGGCCCTTGAAGTTGTTAAACAGAATGTTCGTAGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCCATGGGGCCCTTGAAGTTGTTAAACAGAATGTTCGTAGCTGG  300

seq1  AACTTCATAAAGATTCTGATGAAGCCTGAGCTCCTGAGAAATACTAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATAAAGATTCTGATGAAGCCTGAGCTCCTGAGAAATACTAAACC  350

seq1  TGGGTGAAGCAGCTCAGCGGGGAGCCACGCTCCTCGAGCAAAGCCTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAAGCAGCTCAGCGGGGAGCCACGCTCCTCGAGCAAAGCCTGAGG  400

seq1  TAGAGCTCTGGAACCAAGGAGGCCTCACAGCACCGGGCTACATACAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCTGGAACCAAGGAGGCCTCACAGCACCGGGCTACATACAGTAC  450

seq1  GCCTTTACGCCTTTACGCTTTTACGCCTTTACTTTGGAAGACCAGGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACGCCTTTACGCTTTTACGCCTTTACTTTGGAAGACCAGGTTCC  500

seq1  GGGCTGAGCACCCTCTACATCAACAAATACAGATAAAGACTTTAAAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGCACCCTCTACATCAACAAATACAGATAAAGACTTTAAAACTC  550

seq1  TGAGTATAAAAAAGGCAAAGCAAGTATTATTTCTTTTCTTGAGTGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATAAAAAAGGCAAAGCAAGTATTATTTCTTTTCTTGAGTGTTTTC  600

seq1  TGGCCACACAATCCCACTAAGCCGTGCCAGCCAGCTGCCCACACTTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACACAATCCCACTAAGCCGTGCCAGCCAGCTGCCCACACTTACAT  650

seq1  TTAGCAGACCCTCCCCAAACAACGCCAGGAATGGTTGGCTACCAGTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGACCCTCCCCAAACAACGCCAGGAATGGTTGGCTACCAGTGAGA  700

seq1  AGTGGACTCAGAAAGTACTTTTAATTGGAGTAAAATCTTGGTTTCTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACTCAGAAAGTACTTTTAATTGGAGTAAAATCTTGGTTTCTTTTG  750

seq1  TTCTGGGAAGATAAAATGGAGCTTGGGCTAAAACCGAATCTCTACAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAAGATAAAATGGAGCTTGGGCTAAAACCGAATCTCTACAGCCT  800

seq1  GCTAAACAGAGGAGACACTCCCCACGGGGCAGGCCAGATCTAGTGGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACAGAGGAGACACTCCCCACGGGGCAGGCCAGATCTAGTGGGAAG  850

seq1  CTGGAAGCCCAGAGCCAAGGCCTCCCAGGAGGCAGGGCTGTGAAGGCTCC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGAAGCCCAGAGCCAAGGCCTCCCAGGAGGCAGGGCTGTGAA-GCTCC  899

seq1  CAGGAGGGCAGTGCTAACCTGGAACCACAGGAGTAGTTCCAGAGGATGTA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGGAGGGCAGTGCTAACCTGGAACCACA-GAGTAGTTCCAGAGGATGTA  948

seq1  TTTTTGCTGTCTAGTATTTTTTCTCTCAGAGTGTCCAGCTTATAGCTGAG  1000
       ||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  -TTTTGCTGTCTAGTA-TTTTTCTCTCAGAGTGTCCAGC-TATAGCTGAG  995

seq1  TTACAACCCCCACCACACAAGGAAAGCGGCTCAGGTCTGCTCTTCCTTCT  1050
       ||||  ||||||||||||  | |||| ||||| |||||||||||||   
seq2  -TACA--CCCCACCACACA--GGAAGC-GCTCA-GTCTGCTCTTCCT--C  1036

seq1  TTCACTGTGCCCACTCCATGAGGGTTGCTCCTGCTCACCACCTGAGGAAG  1100
      ||||||||| ||||||   ||||  |||| ||||||||||| ||||  ||
seq2  TTCACTGTG-CCACTCATGGAGG--TGCTTCTGCTCACCACTTGAG--AG  1081

seq1  GATCACTAAGATTGGGGGGCGGGGGGAGGCAGTTCCTAAGTCAGCCACTT  1150
       |||||| ||||        |  |||| |||  |||||||||||||||||
seq2  AATCACT-AGAT-------GGAAGGGAAGCA--TCCTAAGTCAGCCACTT  1121