BAC Information

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BAC

Clone NameB6Ng01-336D01
Chromosome13 (Build37)10 (Build37)
Map Location 110,065,101 - 110,066,26745,327,623 - 45,328,646
singlet/doubletsingletsinglet
Overlap genePde4d, LOC100040968
Upstream geneElovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336D01.bB6Ng01-336D01.g
ACCGA121187GA121188
length1,2031,028
definitionB6Ng01-336D01.b B6Ng01-336D01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,065,101 - 110,066,267)(45,327,623 - 45,328,646)
sequence
gaattctctggccaatttaacagcgagaaagaattaagaatgattatgtt
tgaggcccaagtgataagtcatagctgacattcatggggcttagaagata
ctgggcgacacgtattagggaacgcgatccaagaagttagcgttacattt
ggagtgactactgggtttcaaagtacaagatagtcacttagatcattgtc
tctatgagtccaaagtgcatagcaaagattggcacaatagagccacgtct
ggaaatcattaaaatacagaggtttttgaacttgtgagacttgcagtatg
actgcaccgcgaatgtgtatgaatagagaaagaaagactggtgacagctg
gatacttcaaacattagaaatcagaagatcacagaaacgcagctgaagaa
gccatgagaaggtagcagaagccatgagaaggtagccagtgagtagaacc
aaaaccaagagatggtggcagaccaaaatgtttggtggagaaaagtgtga
tgttagatctgacgatacttatgagcggctaagatgaaggtcagtcactg
agcatgaaactgggccagtggcactagtgggggatcaaacggtgatgaca
caaggccggaggactgattgtttcacatcttctcacctctctttaaacct
cagctacgtatttcttttttcaagttgatgggcttactctttcagtacag
agaaggagcaactaaaacagaccattcagctatgcctgccactacatcca
ccaaactgaccatgcaaacttccagaaccttctactttgccattctgttc
attattatgagtggaaaaaaatcgttattctcttggatagtaacataaga
aatcactccagaactgaaacacttccttactgttcagcccgaaacaattt
gtgatctcataaattatatggtagttaatagtcaggcaaccagcttgtca
gataacggcaatattttgtagtgacctgctgaggaaggcttctctagggc
ttatgacatcagtttcctaggatggtgctgtttacagctaccttgttttt
cactagtatgacagaagacttggtgtcttttctttgtgactctcaaaggt
tgagtttctttgaattgttagcatcgactgaaggaatcaatgagatctat
ataccagtatcatggattagctctttctagcctcacattttcttaactct
cta

gaattcaattctgtgcactattacttgtggtttaggtggttaccattaca
gtcatagtatgcagatttccagtatcacaaagaatttttgccatgctctt
tcacatgccacgttcaaccttcgactgccattctctccatttctaaattc
tgtcatttcaaggatgctaattagacggatcctactatactgaaggcttg
gcttcttctgtgcttattccctggaggttcatctgggttgttgtgtgcat
caagagggtgttcctttataatggtggatggaattgcatggtacatgggt
caaccttctcacctgttaaaagacatttgagtcctctgggttttgggctg
ttatgagtagagctaatataaacatatatattctgtttccttaggataaa
ttctttggaatgaagttgctgcatttgtgcttgcttttaaagcacactac
taactgctgtctacactgagtatcttttcataagcttattttccatgtac
cttacacctgtcctgtcctgtcctggtattttcaagatagggtttctctg
tgtttctctgtatagtcctgactttactggaattctctgtagaccagtct
ggccttgaacttagagatccacctgccctcttgagttctgggactaaaag
aaggtgccaccatggctggcatatatatcactcttatgtgaaatgaaaca
ccagttcatatgtgtcatagttggggttttattgctgtgaaaagatacca
tgaccacgacaactcttataaagaaaccatttaattggggctggcttata
atttcagaggttagtccatgatcattatagcaggacgtggccatgtgcag
gcaaacaaaggtgctagagaaggaactgagacttctatatatcttgatcc
acaggcagcgggagactgccacactgggcatagcttgagcatatgagacc
tcaaagcccaacctcacagtgacacactttcctccagcaggcacactact
cctacagatcacactttgtaatagtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110065101_110066267
seq2: B6Ng01-336D01.b_89_1249

seq1  ATTATGTTTGAGGCCCAAGTGATAAGTCATAGCTGACATTCATGGGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTGAGGCCCAAGTGATAAGTCATAGCTGACATTCATGGGGCTT  50

seq1  AGAAGATACTGGGCGACACGTATTAGGGAACGCGATCCAAGAAGTTAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATACTGGGCGACACGTATTAGGGAACGCGATCCAAGAAGTTAGCG  100

seq1  TTACATTTGGAGTGACTACTGGGTTTCAAAGTACAAGATAGTCACTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGGAGTGACTACTGGGTTTCAAAGTACAAGATAGTCACTTAGA  150

seq1  TCATTGTCTCTATGAGTCCAAAGTGCATAGCAAAGATTGGCACAATAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCTCTATGAGTCCAAAGTGCATAGCAAAGATTGGCACAATAGAG  200

seq1  CCACGTCTGGAAATCATTAAAATACAGAGGTTTTTGAACTTGTGAGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCTGGAAATCATTAAAATACAGAGGTTTTTGAACTTGTGAGACTT  250

seq1  GCAGTATGACTGCACCGCGAATGTGTATGAATAGAGAAAGAAAGACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGACTGCACCGCGAATGTGTATGAATAGAGAAAGAAAGACTGGT  300

seq1  GACAGCTGGATACTTCAAACATTAGAAATCAGAAGATCACAGAAACGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGGATACTTCAAACATTAGAAATCAGAAGATCACAGAAACGCAG  350

seq1  CTGAAGAAGCCATGAGAAGGTAGCAGAAGCCATGAGAAGGTAGCCAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGCCATGAGAAGGTAGCAGAAGCCATGAGAAGGTAGCCAGTGA  400

seq1  GTAGAACCAAAACCAAGAGATGGTGGCAGACCAAAATGTTTGGTGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACCAAAACCAAGAGATGGTGGCAGACCAAAATGTTTGGTGGAGAA  450

seq1  AAGTGTGATGTTAGATCTGACGATACTTATGAGCGGCTAAGATGAAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGATGTTAGATCTGACGATACTTATGAGCGGCTAAGATGAAGGTC  500

seq1  AGTCACTGAGCATGAAACTGGGCCAGTGGCACTAGTGGGGGATCAAACGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGAGCATGAAACTGGGCCAGTGGCACTAGTGGGGGATCAAACGG  550

seq1  TGATGACACAAGGCCGGAGGACTGATTGTTTCACATCTTCTCACCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACACAAGGCCGGAGGACTGATTGTTTCACATCTTCTCACCTCTCT  600

seq1  TTAAACCTCAGCTACGTATTTCTTTTTTCAAGTTGATGGGCTTACTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTCAGCTACGTATTTCTTTTTTCAAGTTGATGGGCTTACTCTTT  650

seq1  CAGTACAGAGAAGGAGCAACTAAAACAGACCATTCAGCTATGCCTGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGAGAAGGAGCAACTAAAACAGACCATTCAGCTATGCCTGCCAC  700

seq1  TACATCCACCAAACTGACCATGCAAACTTCCAGAACCTTCTACTTTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCACCAAACTGACCATGCAAACTTCCAGAACCTTCTACTTTGCCA  750

seq1  TTCTGTTCATTATTATGAGTGGAAAAAAATCGTTATTCTCTTGGATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCATTATTATGAGTGGAAAAAAATCGTTATTCTCTTGGATAGTA  800

seq1  ACATAAGAAATCACTCCAGAACTGAAACACTTCCTTACTGTTCAGCCCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAAATCACTCCAGAACTGAAACACTTCCTTACTGTTCAGCCCGA  850

seq1  AACAATTTGTGATCTCATAAATTATATGGTAGTTAATAGTCAGGCAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTGTGATCTCATAAATTATATGGTAGTTAATAGTCAGGCAACCA  900

seq1  GCTTGTCAGATAACGGCAATATTTTGTAGTGACCTGCTGAGGAAGGCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCAGATAACGGCAATATTTTGTAGTGACCTGCTGAGGAAGGCTTC  950

seq1  TCTAGG--CTATGACATCAG-TTCCTAGGATGGTGCTGTTTACAGGCTAC  997
      ||||||   ||||||||||| ||||||||||||||||||||||| |||||
seq2  TCTAGGGCTTATGACATCAGTTTCCTAGGATGGTGCTGTTTACA-GCTAC  999

seq1  CTTGTTTTTCACTAGTTATTGACAGAAGACTTTGGTGTC-TTTCTTTGTG  1046
      ||||||||||||||||   ||||||||||| |||||||| ||||||||| 
seq2  CTTGTTTTTCACTAGT--ATGACAGAAGAC-TTGGTGTCTTTTCTTTGT-  1045

seq1  GACTTCTTCAAAAGGTTGAGTGTC-TTGA--TGTTAGGGATCGGACTGAG  1093
      ||| |||   ||||||||||| || ||||  ||||| | ||| |||||| 
seq2  GAC-TCT--CAAAGGTTGAGTTTCTTTGAATTGTTA-GCATC-GACTGAA  1090

seq1  GGATACAATAGAGATCTATATACAAGTATCAGTGGGTTTAGCTCTTTCTA  1143
      |||  |||| ||||||||||||| |||||||   || |||||||||||||
seq2  GGAATCAAT-GAGATCTATATACCAGTATCA--TGGATTAGCTCTTTCTA  1137

seq1  AGCCCTCAC-TTTTCTT-ACTCTCTA  1167
         |||||| ||||||| ||||||||
seq2  --GCCTCACATTTTCTTAACTCTCTA  1161


seq1: chr10_45327623_45328646
seq2: B6Ng01-336D01.g_67_1089

seq1  GAATTCAATTCTGTGCACTATTACTTGTGGTTTAGGTGGTTACCATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTGTGCACTATTACTTGTGGTTTAGGTGGTTACCATTACA  50

seq1  GTCATAGTATGCAGATTTCCAGTATCACAAAGAATTTTTGCCATGCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTATGCAGATTTCCAGTATCACAAAGAATTTTTGCCATGCTCTT  100

seq1  TCACATGCCACGTTCAACCTTCGACTGCCATTCTCTCCATTTCTAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCCACGTTCAACCTTCGACTGCCATTCTCTCCATTTCTAAATTC  150

seq1  TGTCATTTCAAGGATGCTAATTAGACGGATCCTACTATACTGAAGGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTCAAGGATGCTAATTAGACGGATCCTACTATACTGAAGGCTTG  200

seq1  GCTTCTTCTGTGCTTATTCCCTGGAGGTTCATCTGGGTTGTTGTGTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCTGTGCTTATTCCCTGGAGGTTCATCTGGGTTGTTGTGTGCAT  250

seq1  CAAGAGGGTGTTCCTTTATAATGGTGGATGGAATTGCATGGTACATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGGTGTTCCTTTATAATGGTGGATGGAATTGCATGGTACATGGGT  300

seq1  CAACCTTCTCACCTGTTAAAAGACATTTGAGTCCTCTGGGTTTTGGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTCTCACCTGTTAAAAGACATTTGAGTCCTCTGGGTTTTGGGCTG  350

seq1  TTATGAGTAGAGCTAATATAAACATATATATTCTGTTTCCTTAGGATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGTAGAGCTAATATAAACATATATATTCTGTTTCCTTAGGATAAA  400

seq1  TTCTTTGGAATGAAGTTGCTGCATTTGTGCTTGCTTTTAAAGCACACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGAATGAAGTTGCTGCATTTGTGCTTGCTTTTAAAGCACACTAC  450

seq1  TAACTGCTGTCTACACTGAGTATCTTTTCATAAGCTTATTTTCCATGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTGTCTACACTGAGTATCTTTTCATAAGCTTATTTTCCATGTAC  500

seq1  CTTACACCTGTCCTGTCCTGTCCTGGTATTTTCAAGATAGGGTTTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACCTGTCCTGTCCTGTCCTGGTATTTTCAAGATAGGGTTTCTCTG  550

seq1  TGTTTCTCTGTATAGTCCTGACTTTACTGGAATTCTCTGTAGACCAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTGTATAGTCCTGACTTTACTGGAATTCTCTGTAGACCAGTCT  600

seq1  GGCCTTGAACTTAGAGATCCACCTGCCCTCTTGAGTTCTGGGACTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAACTTAGAGATCCACCTGCCCTCTTGAGTTCTGGGACTAAAAG  650

seq1  AAGGTGCCACCATGGCTGGCATATATATCACTCTTATGTGAAATGAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCCACCATGGCTGGCATATATATCACTCTTATGTGAAATGAAACA  700

seq1  CCAGTTCATATGTGTCATAGTTGGGGTTTTATTGCTGTGAAAAGATACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCATATGTGTCATAGTTGGGGTTTTATTGCTGTGAAAAGATACCA  750

seq1  TGACCACGACAACTCTTATAAAGAAACCATTTAATTGGGGCTGGCTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACGACAACTCTTATAAAGAAACCATTTAATTGGGGCTGGCTTATA  800

seq1  ATTTCAGAGGTTAGTCCATGATCATTATAGCAGGACGTGGCCATGTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAGGTTAGTCCATGATCATTATAGCAGGACGTGGCCATGTGCAG  850

seq1  GCAAAC-AAGGTGCTAGAGAAGGAACTGAGACTTCTATATATCTTGATCC  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAAGGTGCTAGAGAAGGAACTGAGACTTCTATATATCTTGATCC  900

seq1  ACAGGCAGCGGGAGACTGCCACACTGGGCATAGCTTGAGCATATGAGACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGCGGGAGACTGCCACACTGGGCATAGCTTGAGCATATGAGACC  950

seq1  TCAAAGCCCAACCTCACAGTGACACAC-TTCCTCCAGCAAGGCCACACTA  998
      ||||||||||||||||||||||||||| |||||||||||  | |||||||
seq2  TCAAAGCCCAACCTCACAGTGACACACTTTCCTCCAGCA--GGCACACTA  998

seq1  CTCCTACAAGATCACACTTTGTAATA  1024
      ||||||| ||||||||||||||||||
seq2  CTCCTAC-AGATCACACTTTGTAATA  1023


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