BAC Information

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BAC

Clone NameB6Ng01-336E20
Chromosome13 (Build37)
Map Location 114,849,676 - 114,993,026
singlet/doubletdoublet
Overlap geneArl15, A430090L17Rik
Upstream geneCdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336E20.bB6Ng01-336E20.g
ACCGA121263GA121264
length1,1931,119
definitionB6Ng01-336E20.b B6Ng01-336E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,991,838 - 114,993,026)(114,849,676 - 114,850,813)
sequence
gaattcactactgttgctttagtaaaagtgacatgagctgccttctgaac
acctatgtgtattctcagacaaataccactctcagcctctagcgaagttt
ctcctttgtagtgaatgcagacactgaaagctgcttcagatgctgagagc
agaagacagttgagttctcagcaggaaagaagacgttcataatgcccctt
ctaagactcaggggacaccacacacatgcacacgcacgcacacacataca
cacactcagatgttagtctgataatcaaaggttgacaaagacaagaattt
atgaaactcaactgctgcttggtgtcgaagcatcctaggcaatgggtgac
atagtggaagtcaatgttttgcgggagcatcacgccttataaacacatgc
acttctgtttctaaacaaatccctcagctctgccggataggaggatttgg
tttgtggaaaaagaagcactctactccatataactacatctttatctgag
ccttcacagaaatgtttgtcaaactggaagctaaaaaagaagaagaagaa
gaaaaaaaaaaaaaggcagcagtggctgctatctggtagctagcacattc
aataggaatagcgatttcatctgaataacttcagatgggacacagggtgc
ttcagaaaaggcaggtaaggagatagccctgtcttccacactccagctca
ggcttttgttccgagttctatgtgccttcagcccacccctcacgcttgcc
tcactttcccattctttgggtggatcgcaaaggaaccctcccttcctttc
acctctttcttttccaaccaagctgtgctctctggtcctagcaacttgta
cgctgcaggcctctcctggctcagaagaatgcacttgaactggccgtagc
agtatgcccttcctgggaagatgcggatgctgacattttctgttcacact
cttcttgcccacacacttgtccaattactttcctcctgcatccctcctgg
ctcctcagagagctgtcatcacttagtacatgctttaccctattgtaact
gggttatgtgtatatccactgtgtccggtttctacgctccactgccacat
ccctttgaacgagagtcctatcttcaattccattgtagctcccaggtggg
tcagtgccacacacattgggaggagggccccttctcaaatgta
gaattcttggcagtgtcctctgaaccagatacctaccaatcgagcataat
aggaagctttaaaactccggacgttgcatagccagacaaatcagtactga
atgacaatgttcttttaaaaagcataggactatatttaatcagataaact
aaatgatagatgtcatttttatggaaagctaagaactagtaattttggtt
ggtccgagaaggaaaacaagagtgtcaaatctaaaagttaatgacaatac
tggcttctctcggtcgatacaaatggttgaaagcaactctatgttgtgct
tggacaattcaacagtgatgataaatatggagaactacagaaagaacttt
tgtttttgctgctaaatattagtaggaatccaggggtgtgtacacaccac
acacagattattttaaagtatctgtgctttgttttacgaatttgggagat
ttgttcatactacagcatacgtgttgctaagattcactagtgatgctcag
gccgtttttgggactttggaataaccttaaacacaattcattattagtgt
ttgcttgccttatatttcaaggactttctcagtcagtcgcaagaatgaaa
tgacagtgcgaaaatatatactaggggtgcaaaattatttccaattatcg
atagcaacttactaacgcaagctttagttttccacttggggtgaaaagaa
aagcagcccctctgaggaattctgaggcgcagttgacaaacctttggggg
aaaggtcaaaagcaaggaattaggtagaactgggaaccctcttcagtttc
tcttattcacatgataaagtagcaatcaagatacacccctgtgatttttc
acatctgggaggcatgccaccaccgtagctaaagggacagtctctggctt
tggggcagaaacgagtaaacaggacagtgtgaagaaaagtgtgctgctga
cccttagcctgcagctgtgagctgccagagcacagagtcagaagatgacg
tagagggctcatctgtgctttaaagtttgatgtcagagcccaaagtctgg
gtacaaagttcagcctcgaaccagtttccgagggcatttctgtagtagca
ctgcatcaggccatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_114991838_114993026
seq2: B6Ng01-336E20.b_52_1239 (reverse)

seq1  TCCATTTGA----GGGGCCTCCTCC--ATGTGTG-GGCACTGAACCCACC  43
      | |||||||    ||| ||||||||  ||||||| ||||||| |||||||
seq2  TACATTTGAGAAGGGGCCCTCCTCCCAATGTGTGTGGCACTG-ACCCACC  49

seq1  GTGGGGAGCTACAAAGGAAATGGAAGATAGGGCTCCCTTTGGTCAAAGGA  93
         ||||||||||| || ||| ||||||||| |||   | | ||||||| 
seq2  --TGGGAGCTACAATGG-AATTGAAGATAGGACTC---TCGTTCAAAGGG  93

seq1  TTGT-GCAGTGGAGCCGTAGAAA-CGGACACAGTGGATATACACATTAAC  141
       ||| ||||||||| |||||||| ||||||||||||||||||||| ||||
seq2  ATGTGGCAGTGGAG-CGTAGAAACCGGACACAGTGGATATACACA-TAAC  141

seq1  CAAGTAAC-ATAGGGTAAAGCATGTACCTAAGTGATGACAGCTCTCTGAG  190
      | ||| || ||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGTTACAATAGGGTAAAGCATGTA-CTAAGTGATGACAGCTCTCTGAG  190

seq1  GAGCCAGGAGGGATGCAGGAGGAAAGTAATTGGACAAGTGTGTGGGCAAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGAGGGATGCAGGAGGAAAGTAATTGGACAAGTGTGTGGGCAAG  240

seq1  AAGAGTGTGAACAGAAAATGTCAGCATCCGCATCTTCCCAGGGAAGGGCA  290
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAGTGTGAACAGAAAATGTCAGCATCCGCATCTTCCCA-GGAAGGGCA  289

seq1  TACTGCTACGGCCAGTTCAAGTGCATTCTTCTGAGCCAGGAGAGGCCTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTACGGCCAGTTCAAGTGCATTCTTCTGAGCCAGGAGAGGCCTGC  339

seq1  AGCGTACAAGTTGCTAGGACCAGAGAGCACAGCTTGGTTGGAAAAGAAAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTACAAGTTGCTAGGACCAGAGAGCACAGCTTGGTTGGAAAAGAAAG  389

seq1  AGGTGAAAGGAAGGGAGGGTTCCTTTGCGATCCACCCAAAGAATGGGAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAGGAAGGGAGGGTTCCTTTGCGATCCACCCAAAGAATGGGAAA  439

seq1  GTGAGGCAAGCGTGAGGGGTGGGCTGAAGGCACATAGAACTCGGAACAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAAGCGTGAGGGGTGGGCTGAAGGCACATAGAACTCGGAACAAA  489

seq1  AGCCTGAGCTGGAGTGTGGAAGACAGGGCTATCTCCTTACCTGCCTTTTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGCTGGAGTGTGGAAGACAGGGCTATCTCCTTACCTGCCTTTTC  539

seq1  TGAAGCACCCTGTGTCCCATCTGAAGTTATTCAGATGAAATCGCTATTCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACCCTGTGTCCCATCTGAAGTTATTCAGATGAAATCGCTATTCC  589

seq1  TATTGAATGTGCTAGCTACCAGATAGCAGCCACTGCTGCCTTTTTTTTTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATGTGCTAGCTACCAGATAGCAGCCACTGCTGCCTTTTTTTTTT  639

seq1  TTTCTTCTTCTTCTTCTTTTTTAGCTTCCAGTTTGACAAACATTTCTGTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTCTTCTTCTTTTTTAGCTTCCAGTTTGACAAACATTTCTGTG  689

seq1  AAGGCTCAGATAAAGATGTAGTTATATGGAGTAGAGTGCTTCTTTTTCCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAGATAAAGATGTAGTTATATGGAGTAGAGTGCTTCTTTTTCCA  739

seq1  CAAACCAAATCCTCCTATCCGGCAGAGCTGAGGGATTTGTTTAGAAACAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAATCCTCCTATCCGGCAGAGCTGAGGGATTTGTTTAGAAACAG  789

seq1  AAGTGCATGTGTTTATAAGGCGTGATGCTCCCGCAAAACATTGACTTCCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATGTGTTTATAAGGCGTGATGCTCCCGCAAAACATTGACTTCCA  839

seq1  CTATGTCACCCATTGCCTAGGATGCTTCGACACCAAGCAGCAGTTGAGTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCACCCATTGCCTAGGATGCTTCGACACCAAGCAGCAGTTGAGTT  889

seq1  TCATAAATTCTTGTCTTTGTCAACCTTTGATTATCAGACTAACATCTGAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTCTTGTCTTTGTCAACCTTTGATTATCAGACTAACATCTGAG  939

seq1  TGTGTGTATGTGTGTGCGTGCGTGTGCATGTGTGTGGTGTCCCCTGAGTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTGTGCGTGCGTGTGCATGTGTGTGGTGTCCCCTGAGTC  989

seq1  TTAGAAGGGGCATTATGAACGTCTTCTTTCCTGCTGAGAACTCAACTGTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGGGCATTATGAACGTCTTCTTTCCTGCTGAGAACTCAACTGTC  1039

seq1  TTCTGCTCTCAGCATCTGAAGCAGCTTTCAGTGTCTGCATTCACTACAAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTCAGCATCTGAAGCAGCTTTCAGTGTCTGCATTCACTACAAA  1089

seq1  GGAGAAACTTCGCTAGAGGCTGAGAGTGGTATTTGTCTGAGAATACACAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACTTCGCTAGAGGCTGAGAGTGGTATTTGTCTGAGAATACACAT  1139

seq1  AGGTGTTCAGAAGGCAGCTCATGTCACTTTTACTAAAGCAACAGTAGTG  1189
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCAGAAGGCAGCTCATGTCACTTTTACTAAAGCAACAGTAGTG  1188

seq1: chr13_114849676_114850813
seq2: B6Ng01-336E20.g_64_1182

seq1  GAATTCTTGGCAGTGTCCTCTGAACCAGATACCTACCAATCGAGCATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCAGTGTCCTCTGAACCAGATACCTACCAATCGAGCATAAT  50

seq1  AGGAAGCTTTAAAACTCCGGACGTTGCATAGCCAGACAAATCAGTACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTTTAAAACTCCGGACGTTGCATAGCCAGACAAATCAGTACTGA  100

seq1  ATGACAATGTTCTTTTAAAAAGCATAGGACTATATTTAATCAGATAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGTTCTTTTAAAAAGCATAGGACTATATTTAATCAGATAAACT  150

seq1  AAATGATAGATGTCATTTTTATGGAAAGCTAAGAACTAGTAATTTTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAGATGTCATTTTTATGGAAAGCTAAGAACTAGTAATTTTGGTT  200

seq1  GGTCCGAGAAGGAAAACAAGAGTGTCAAATCTAAAAGTTAATGACAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGAGAAGGAAAACAAGAGTGTCAAATCTAAAAGTTAATGACAATAC  250

seq1  TGGCTTCTCTCGGTCGATACAAATGGTTGAAAGCAACTCTATGTTGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTCTCGGTCGATACAAATGGTTGAAAGCAACTCTATGTTGTGCT  300

seq1  TGGACAATTCAACAGTGATGATAAATATGGAGAACTACAGAAAGAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATTCAACAGTGATGATAAATATGGAGAACTACAGAAAGAACTTT  350

seq1  TGTTTTTGCTGCTAAATATTAGTAGGAATCCAGGGGTGTGTACACACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGCTGCTAAATATTAGTAGGAATCCAGGGGTGTGTACACACCAC  400

seq1  ACACAGATTATTTTAAAGTATCTGTGCTTTGTTTTACGAATTTGGGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATTATTTTAAAGTATCTGTGCTTTGTTTTACGAATTTGGGAGAT  450

seq1  TTGTTCATACTACAGCATACGTGTTGCTAAGATTCACTAGTGATGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATACTACAGCATACGTGTTGCTAAGATTCACTAGTGATGCTCAG  500

seq1  GCCGTTTTTGGGACTTTGGAATAACCTTAAACACAATTCATTATTAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTTTTGGGACTTTGGAATAACCTTAAACACAATTCATTATTAGTGT  550

seq1  TTGCTTGCCTTATATTTCAAGGACTTTCTCAGTCAGTCGCAAGAATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCCTTATATTTCAAGGACTTTCTCAGTCAGTCGCAAGAATGAAA  600

seq1  TGACAGTGCGAAAATATATACTAGGGGTGCAAAATTATTTCCAATTATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGCGAAAATATATACTAGGGGTGCAAAATTATTTCCAATTATCG  650

seq1  ATAGCAACTTACTAACGCAAGCTTTAGTTTTCCACTTGGGGTGAAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACTTACTAACGCAAGCTTTAGTTTTCCACTTGGGGTGAAAAGAA  700

seq1  AAGCAGCCCCTCTGAGGAATTCTGAGGCGCAGTTGACAAACCTTTGGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCCCTCTGAGGAATTCTGAGGCGCAGTTGACAAACCTTTGGGGG  750

seq1  AAAGGTCAAAAGCAAGGAATTAGGTAGAACTGGGAACCCTCTTCAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCAAAAGCAAGGAATTAGGTAGAACTGGGAACCCTCTTCAGTTTC  800

seq1  TCTTATTCACATGATAAAGTAGCAATCAAGATACACCCCTGTGATTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCACATGATAAAGTAGCAATCAAGATACACCCCTGTGATTTTTC  850

seq1  ACATCTGGGAGGCATGCCACCACCGTAGCTAAAGGGACAGTCTCTGGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGGAGGCATGCCACCACCGTAGCTAAAGGGACAGTCTCTGGCTT  900

seq1  TGGGGCAGAAACGAGTAAACAGGACAGTGTGAAGAAAAGTTGTGGCTGCT  950
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  TGGGGCAGAAACGAGTAAACAGGACAGTGTGAAGAAAAG-TGT-GCTGCT  948

seq1  GACCCTTAGCCTGCAAGCTGTGAGCTGCCAGAAGCACAGAGGTCAGAAGG  1000
      |||||||||||||| |||||||||||||||| |||||||| ||||||| |
seq2  GACCCTTAGCCTGC-AGCTGTGAGCTGCCAG-AGCACAGA-GTCAGAA-G  994

seq1  ATGACGTAAGAGGGGCTTCATCTGTGCTTTTAAAGGTTTTGATGTCAGAG  1050
      ||||||| ||||||   |||||||||| |||||||  |||||||||||||
seq2  ATGACGT-AGAGGG--CTCATCTGTGC-TTTAAAG--TTTGATGTCAGAG  1038

seq1  CCCAAAGTTCTGGGTACAAAAGGTTCAGCCCTCGACACAGTTTTCAGAGG  1100
      ||||||| ||||||||||||  |||||| ||||||  ||| |||| ||||
seq2  CCCAAAG-TCTGGGTACAAA--GTTCAG-CCTCGAACCAG-TTTCCGAGG  1083

seq1  GCATTTCTGGTAGGTAGCACTGCATCAGCGCATGGGGG  1138
      |||||||| ||| |||||||||||||||  ||||||||
seq2  GCATTTCT-GTA-GTAGCACTGCATCAGGCCATGGGGG  1119