BAC Information

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BAC

Clone NameB6Ng01-336O19
Chromosome13 (Build37)
Map Location 82,453,156 - 82,575,052
singlet/doubletdoublet
Overlap geneLOC238756
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336O19.bB6Ng01-336O19.g
ACCGA121703GA121704
length1,1821,108
definitionB6Ng01-336O19.b B6Ng01-336O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,453,156 - 82,454,069)(82,573,942 - 82,575,052)
sequence
gaattctttgtttagctttgtaccccatttttaataggattatttggttt
ctgaattctaaattcctgagttctttatatttattggataatagctctct
atcagatttaggatcggtaaaaatcttttcccaatttgttggttgccttt
tttgtcttattgacagtatcctttgtcttacagaagatttgcaagtttat
gagatctcattcttcacagagttagaaagagcaatttgtaaattcatctg
gaataaataaaaaattagtatagtgaaaactattctctacaataaaagaa
cctcagtggaatcactgtaccagatctcaacctgtactacacagcaattg
tgataaaaaaaaaaaaacaaaaaacaaactgcatggtatttgtacaatga
caggcagatagatcaatagaatagaagtgaagaccaagaaataaacccac
acacatatggtcacttgacctttgacaaaggagctaaaaccatccagtgg
aaaaaagagagtattttcagcatatggtgctggcacaactgtctgactgt
tcgcatgtagaataatacaaatcgatccattcttatctctctgtacagaa
ctcaagtcaaagtggatcaaggaactccaaataaaaacagatacactgaa
ccttatagaggagaaagtggggaagagcttcgaacatatgggcacagggg
aaaaattccttaacagaacatcaatggcttgtgctgtaagatcaagaatc
cacaaatgggatctagccatttcctaagaaacaagtttcttgttagattt
gaataagcatgttaactttcttctcacggcctgagagtgcctgatataaa
gaggttaagagaggaggaaggatctactagggcttatggtgttaggttca
tgtttgagtggtcctatgactttgagaaattatcatggcaactatagcat
gtgatggagaactttcttttagttttcctcagacaggaagcagagagaaa
gaagaagagcagcatctagataggagagagctcctgatgtcatgcctcca
ggggcctgacctccttcaataatatatcacctctaacttttctacacttt
ccataataaaagcactcttctggagtcagccatgtgacaaaagagtcttg
gtgaggggctgttcttagcagcacttcctcag
gaattcaagagtctctcctatggcagacctgttgctggaagcaggaaagc
tgaatcaccttaccagattgggagagttgaccctgttggtacaagtgaga
gagaaagaacaagaaaagctgtttggggaaaaaacggtatcccgtgtcat
acacgagcatacaacacagattctatagggagatatttttaaagtcagtg
ctctcttcattcatttttattgttttttttttttgtggggagtttgcaag
gtcagaggatgtagaaatatggagggacagggagataagaggaattgggg
cacatgatgtgaactttgcaaagaattaataaaaagacaaaaaaaataga
atgtttatgccattgtatactagggttgcataactatacttcagtttttg
gggtttttttttttttttttttttataaagcctaacaattaatacattgc
ctgtagtctttgaaaagactttgaattttggacttgtgaacaccatttga
attatgaggctacatggacttttgaagttagtctgaaagcacttcacatt
ctgaaatggacataagcctatagagggtgaaatatgttttgcatgtaaaa
accacacaggctcatgttcttaaacatttggtccccagctgatggtgtta
tcttaggcagttgtagaccattcaggagacaaatcctagctggaggaaat
gggttattggccagaggggtttaaatattatcagcctccttgtggactgt
ttgttcagcactgtttacaaacatgtgccacaacgttttccccaccacgt
tgaactacattcccataaaaccatgagatgaaagaatttttcaattattt
gttcactgcaacaaagaaagtaatactgatactaaatgacagtaaaatat
aatgtgtttgtgtttagctgagaaagacccatgcaaatattctttcatct
actagaatgcttgaacagccacatttaataaatataaaaagggtttctcc
atttaaatacttgcttaggtataatcaaggtgatacctttctttatttct
tcttggaattataaaggtgccaagaaattattagaacatggcctataaat
actaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82453156_82454069
seq2: B6Ng01-336O19.b_312_1226

seq1  GTATAGTGAAAACTATTCTCTACAATAAAAGAACCTCAGTGGAATCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGAAAACTATTCTCTACAATAAAAGAACCTCAGTGGAATCACTG  50

seq1  TACCAGATCTCAACCTGTACTACACAGCAATTGTGATAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATCTCAACCTGTACTACACAGCAATTGTGATAAAAAAAAAAAAA  100

seq1  CAAAAAACAAACTGCATGGTATTTGTACAATGACAGGCAGATAGATCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAACTGCATGGTATTTGTACAATGACAGGCAGATAGATCAAT  150

seq1  AGAATAGAAGTGAAGACCAAGAAATAAACCCACACACATATGGTCACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAAGTGAAGACCAAGAAATAAACCCACACACATATGGTCACTTG  200

seq1  ACCTTTGACAAAGGAGCTAAAACCATCCAGTGGAAAAAAGAGAGTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGACAAAGGAGCTAAAACCATCCAGTGGAAAAAAGAGAGTATTTT  250

seq1  CAGCATATGGTGCTGGCACAACTGTCTGACTGTTCGCATGTAGAATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATGGTGCTGGCACAACTGTCTGACTGTTCGCATGTAGAATAATA  300

seq1  CAAATCGATCCATTCTTATCTCTCTGTACAGAACTCAAGTCAAAGTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGATCCATTCTTATCTCTCTGTACAGAACTCAAGTCAAAGTGGAT  350

seq1  CAAGGAACTCCAAATAAAAACAGATACACTGAACCTTATAGAGGAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACTCCAAATAAAAACAGATACACTGAACCTTATAGAGGAGAAAG  400

seq1  TGGGGAAGAGCTTCGAACATATGGGCACAGGGGAAAAATTCCTTAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGAGCTTCGAACATATGGGCACAGGGGAAAAATTCCTTAACAGA  450

seq1  ACATCAATGGCTTGTGCTGTAAGATCAAGAATCCACAAATGGGATCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATGGCTTGTGCTGTAAGATCAAGAATCCACAAATGGGATCTAGC  500

seq1  CATTTCCTAAGAAACAAGTTTCTTGTTAGATTTGAATAAGCATGTTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAAGAAACAAGTTTCTTGTTAGATTTGAATAAGCATGTTAACT  550

seq1  TTCTTCTCACGGCCTGAGAGTGCCTGATATAAAGAGGTTAAGAGAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCACGGCCTGAGAGTGCCTGATATAAAGAGGTTAAGAGAGGAGG  600

seq1  AAGGATCTACTAGGGCTTATGGTGTTAGGTTCATGTTTGAGTGGTCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTACTAGGGCTTATGGTGTTAGGTTCATGTTTGAGTGGTCCTAT  650

seq1  GACTTTGAGAAAATTATCATGGCAACTATAGCATGTGATGGAGAACTT--  698
      ||||||||| ||||||||||||||||||||||||||||||||||||||  
seq2  GACTTTGAG-AAATTATCATGGCAACTATAGCATGTGATGGAGAACTTTC  699

seq1  CTTTAGTTTTCCTCAGACAGGAAGCAGAGAGAAAGAAGAAGAGCAAGCAT  748
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTAGTTTTCCTCAGACAGGAAGCAGAGAGAAAGAAGAAGAGC-AGCAT  748

seq1  CTAGAATAAGAGAGAGCTCCTGATGTCATGCCTCCAGGGGCCTGA-CTCC  797
      |||| ||| |||||||||||||||||||||||||||||||||||| ||||
seq2  CTAG-ATAGGAGAGAGCTCCTGATGTCATGCCTCCAGGGGCCTGACCTCC  797

seq1  TTCAAT-ATATATCACCTCCTAACTTTCCTACAACCTTCCAT-ATAAAAG  845
      |||||| ||||||||||| |||||||| |||| || |||||| |||||||
seq2  TTCAATAATATATCACCT-CTAACTTTTCTAC-ACTTTCCATAATAAAAG  845

seq1  CACTC-TCTGGAGTCCAAGCATGTGACAAAAGAGCCT--GTGAGGGGCTG  892
      ||||| |||||||| ||  ||||||||||||||| ||  |||||||||||
seq2  CACTCTTCTGGAGT-CAGCCATGTGACAAAAGAGTCTTGGTGAGGGGCTG  894

seq1  TTCCTAGCAGGCCAC-TCCTCAG  914
      ||| ||||||  ||| |||||||
seq2  TTCTTAGCAG--CACTTCCTCAG  915

seq1: chr13_82573942_82575052
seq2: B6Ng01-336O19.g_67_1174 (reverse)

seq1  TATTTAGTATTTATAGGCAATTGTTCTTAATAATTTCTTGGGCACTTTAT  50
      |||||||||||||||||| | ||||| |||||||||||| ||||| ||  
seq2  TATTTAGTATTTATAGGCCA-TGTTC-TAATAATTTCTT-GGCACCTTTA  47

seq1  TAATATCAAAGAAGAAATAAAGAAATGTATCAACTTGATTAATAACTTAA  100
      |||| || ||||||||||||||||| |||||| ||||||||   || |||
seq2  TAAT-TCCAAGAAGAAATAAAGAAAGGTATCACCTTGATTA--TACCTAA  94

seq1  GCAAGTATTTAAATGGAGAAA-CCTTTTTATATTTATTAAATGTGGCTGT  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAAGTATTTAAATGGAGAAACCCTTTTTATATTTATTAAATGTGGCTGT  144

seq1  TCAAGCATTCTAGTAGATGAAAGAATATTTGCATGGGTC-TTCTCAGCTA  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAAGCATTCTAGTAGATGAAAGAATATTTGCATGGGTCTTTCTCAGCTA  194

seq1  AACAC-AACACATTATATTTTACTGTCATTTAGTATCAGTATTACTTTCT  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAACACATTATATTTTACTGTCATTTAGTATCAGTATTACTTTCT  244

seq1  TTGTTGCAGTGAACAAATAATTGAAAAATTCTTTCATCTCATGGTTTTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCAGTGAACAAATAATTGAAAAATTCTTTCATCTCATGGTTTTAT  294

seq1  GGGAATGTAGTTCAACGTGGTGGGGAAAACGTTGTGGCACATGTTTGTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTAGTTCAACGTGGTGGGGAAAACGTTGTGGCACATGTTTGTAA  344

seq1  ACAGTGCTGAACAAACAGTCCACAAGGAGGCTGATAATATTTAAACCCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGAACAAACAGTCCACAAGGAGGCTGATAATATTTAAACCCCT  394

seq1  CTGGCCAATAACCCATTTCCTCCAGCTAGGATTTGTCTCCTGAATGGTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAATAACCCATTTCCTCCAGCTAGGATTTGTCTCCTGAATGGTCT  444

seq1  ACAACTGCCTAAGATAACACCATCAGCTGGGGACCAAATGTTTAAGAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCCTAAGATAACACCATCAGCTGGGGACCAAATGTTTAAGAACA  494

seq1  TGAGCCTGTGTGGTTTTTACATGCAAAACATATTTCACCCTCTATAGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTGTGGTTTTTACATGCAAAACATATTTCACCCTCTATAGGCT  544

seq1  TATGTCCATTTCAGAATGTGAAGTGCTTTCAGACTAACTTCAAAAGTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCATTTCAGAATGTGAAGTGCTTTCAGACTAACTTCAAAAGTCCA  594

seq1  TGTAGCCTCATAATTCAAATGGTGTTCACAAGTCCAAAATTCAAAGTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTCATAATTCAAATGGTGTTCACAAGTCCAAAATTCAAAGTCTT  644

seq1  TTCAAAGACTACAGGCAATGTATTAATTGTTAGGCTTTATAAAAAAAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGACTACAGGCAATGTATTAATTGTTAGGCTTTATAAAAAAAAAA  694

seq1  AAAAAAAAAAACCCCAAAAACTGAAGTATAGTTATGCAACCCTAGTATAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCCCAAAAACTGAAGTATAGTTATGCAACCCTAGTATAC  744

seq1  AATGGCATAAACATTCTATTTTTTTTGTCTTTTTATTAATTCTTTGCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATAAACATTCTATTTTTTTTGTCTTTTTATTAATTCTTTGCAAA  794

seq1  GTTCACATCATGTGCCCCAATTCCTCTTATCTCCCTGTCCCTCCATATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATCATGTGCCCCAATTCCTCTTATCTCCCTGTCCCTCCATATTT  844

seq1  CTACATCCTCTGACCTTGCAAACTCCCCACAAAAAAAAAAAACAATAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCTCTGACCTTGCAAACTCCCCACAAAAAAAAAAAACAATAAAA  894

seq1  ATGAATGAAGAGAGCACTGACTTTAAAAATATCTCCCTATAGAATCTGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAAGAGAGCACTGACTTTAAAAATATCTCCCTATAGAATCTGTG  944

seq1  TTGTATGCTCGTGTATGACACGGGATACCGTTTTTTCCCCAAACAGCTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGCTCGTGTATGACACGGGATACCGTTTTTTCCCCAAACAGCTTT  994

seq1  TCTTGTTCTTTCTCTCTCACTTGTACCAACAGGGTCAACTCTCCCAATCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCTTTCTCTCTCACTTGTACCAACAGGGTCAACTCTCCCAATCT  1044

seq1  GGTAAGGTGATTCAGCTTTCCTGCTTCCAGCAACAGGTCTGCCATAGGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTGATTCAGCTTTCCTGCTTCCAGCAACAGGTCTGCCATAGGAG  1094

seq1  AGACTCTTGAATTC  1111
      ||||||||||||||
seq2  AGACTCTTGAATTC  1108