BAC Information

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BAC

Clone NameB6Ng01-337B20
Chromosome13 (Build37)
Map Location 55,661,575 - 55,821,324
singlet/doubletdoublet
Overlap geneBC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik
Upstream gene4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41
Downstream genePcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337B20.bB6Ng01-337B20.g
ACCGA121836GA121837
length1,112570
definitionB6Ng01-337B20.b B6Ng01-337B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,820,209 - 55,821,324)(55,661,575 - 55,662,148)
sequence
gaattccagtgcccttctgctgccttcagatcaagaactctcaactcctc
cagagccatgtctgcttgcacaccacccgccatgttgataatggactaaa
cctctgaacctgtaagtcagtgccatttaaataagagttgccttggtcat
ggtgtcccttcacagcaataagaccctaactaagacaatatcaaacactt
tcagactgtcatcttgccagagctaagatcaatgtgtaaggccaaaggtc
aaaggttggtgcaagtcgatggagccaggtcaagggagcactgctcctgc
cccaggtgtccgagccgtaacccagactggctcggtcatccgtgtgacaa
caaaacagcccttcagggcctgaggacagtgttctgaccccagatctgga
gaagctgcatgaattaactatgtcatgccctccatgacagtgagccacca
ctgccctcagagctaaggtttgcaaagcaggcacaaggctcccagtcttg
agagagaagagaaactttagcactgtaacactgtaatattccagcgtaaa
tatcaaactgcagtttcagacattcggattttcttttctttaaaaaaaat
catttatttttattatttttttaatcatgtgtgtgtacctgagcgaaggc
actagaggaggccagagaggacattggatcccctggagctagaattccat
gtgattgtgcaccatccaaagtgggtgctgggaattgaacttgggtcctc
tggacgagcagagctcccttagctgtttagccagctctctagcccctcgt
tcagacttctttaaaaacttgggttttttggtggtgctggggattgaacc
cagggccttacacaagcgaggcaagtgctctatccccgagctagtctcag
ctccagaaaagggaaactgctgtgattctgatcgcaagtgcctgggtgtc
cgtccagtagacgttttccatgggccttgtagttggagtagtctaggatt
gactggcctttgttcaccttaaacatcattcttttcttttagacagcagc
tgcatacaaattccccagcactcatatataagcggtgttagtgcagactt
aggacccagcac
ctacagcaggccttcagctgtttgttcctaacaagttcacactaggcatt
agctggtcacaatcctccccttaagtctactgcccttacttcctgttctc
aggaccatgtaatttggaagggccacccccaaaagccctcagattctggt
gtctttctcaggatacaaggcgctgtggggataggagatttgccatttct
ttgttgttttgagaaagggtctcaccacctcaccaccagggatggggcat
ggtgacaatgggagtacctctaatcccagcacttgggaggcagaggcaga
ggactatctaaagtttgaggtcagattgatctccagagtaagtttcagga
cagccttcagaggctttacagagaaaccttgtctcaaggggaaaaagaga
gtgtggggtggggggaggcattcactataagctcaggttaccaccgaaac
tcacagtcttcctgcctcagcctcctaagtgctagggctacaggggtgtg
ccacttatatctgactctcttgacattttcatttctgcttttttattttt
ctaaacttgtttttattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55820209_55821324
seq2: B6Ng01-337B20.b_48_1159 (reverse)

seq1  GTGCTGGGGTCTTAGGTCTGCACTACCA-CGCTTAATATTATGAGGTGCT  49
      ||||| ||||| || |||||||||| || ||||| ||| ||||| |||||
seq2  GTGCT-GGGTCCTAAGTCTGCACTAACACCGCTT-ATA-TATGA-GTGCT  46

seq1  GGGG-ATTTGTATTGCAGCCCTGCTGTCTTAAAAGAAAAG-ATGATGTTT  97
      |||| ||||||| |||||  |||||||| ||||||||||| |||||||||
seq2  GGGGAATTTGTA-TGCAG--CTGCTGTC-TAAAAGAAAAGAATGATGTTT  92

seq1  -AGGTGACCAAAAGCCAGTCATTCCTAGACTACTCCCACTAACAAGG-CC  145
       |||||| |||| |||||||| |||||||||||||| ||| |||||| ||
seq2  AAGGTGAACAAAGGCCAGTCAATCCTAGACTACTCCAACT-ACAAGGCCC  141

seq1  ATGGAAAACGTCCTACTGGACGGACACCCAGGCACTTGCGATCAGAATCA  195
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAACGT-CTACTGGACGGACACCCAGGCACTTGCGATCAGAATCA  190

seq1  CAGCAGTTT-CCTTTTCTGGAGCTGAGACTAGCTCGGGGATAGAGCACTT  244
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTTCCCTTTTCTGGAGCTGAGACTAGCTCGGGGATAGAGCACTT  240

seq1  GCCTCGCTTGTGTAAGGCCCTGGGTTCAATCCCCAGCACCACCAAAAAAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGCTTGTGTAAGGCCCTGGGTTCAATCCCCAGCACCACCAAAAAAC  290

seq1  CCAAGTTTTTAAAGAAGTCTGAACGAGGGGCTAGAGAGCTGGCTAAACAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTTTAAAGAAGTCTGAACGAGGGGCTAGAGAGCTGGCTAAACAG  340

seq1  CTAAGGGAGCTCTGCTCGTCCAGAGGACCCAAGTTCAATTCCCAGCACCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGAGCTCTGCTCGTCCAGAGGACCCAAGTTCAATTCCCAGCACCC  390

seq1  ACTTTGGATGGTGCACAATCACATGGAATTCTAGCTCCAGGGGATCCAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGATGGTGCACAATCACATGGAATTCTAGCTCCAGGGGATCCAAT  440

seq1  GTCCTCTCTGGCCTCCTCTAGTGCCTTCGCTCAGGTACACACACATGATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTCTGGCCTCCTCTAGTGCCTTCGCTCAGGTACACACACATGATT  490

seq1  AAAAAAATAATAAAAATAAATGATTTTTTTTAAAGAAAAGAAAATCCGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAATAAAAATAAATGATTTTTTTTAAAGAAAAGAAAATCCGAA  540

seq1  TGTCTGAAACTGCAGTTTGATATTTACGCTGGAATATTACAGTGTTACAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAACTGCAGTTTGATATTTACGCTGGAATATTACAGTGTTACAG  590

seq1  TGCTAAAGTTTCTCTTCTCTCTCAAGACTGGGAGCCTTGTGCCTGCTTTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGTTTCTCTTCTCTCTCAAGACTGGGAGCCTTGTGCCTGCTTTG  640

seq1  CAAACCTTAGCTCTGAGGGCAGTGGTGGCTCACTGTCATGGAGGGCATGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTAGCTCTGAGGGCAGTGGTGGCTCACTGTCATGGAGGGCATGA  690

seq1  CATAGTTAATTCATGCAGCTTCTCCAGATCTGGGGTCAGAACACTGTCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTAATTCATGCAGCTTCTCCAGATCTGGGGTCAGAACACTGTCCT  740

seq1  CAGGCCCTGAAGGGCTGTTTTGTTGTCACACGGATGACCGAGCCAGTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTGAAGGGCTGTTTTGTTGTCACACGGATGACCGAGCCAGTCTG  790

seq1  GGTTACGGCTCGGACACCTGGGGCAGGAGCAGTGCTCCCTTGACCTGGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACGGCTCGGACACCTGGGGCAGGAGCAGTGCTCCCTTGACCTGGCT  840

seq1  CCATCGACTTGCACCAACCTTTGACCTTTGGCCTTACACATTGATCTTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGACTTGCACCAACCTTTGACCTTTGGCCTTACACATTGATCTTAG  890

seq1  CTCTGGCAAGATGACAGTCTGAAAGTGTTTGATATTGTCTTAGTTAGGGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAAGATGACAGTCTGAAAGTGTTTGATATTGTCTTAGTTAGGGT  940

seq1  CTTATTGCTGTGAAGGGACACCATGACCAAGGCAACTCTTATTTAAATGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGCTGTGAAGGGACACCATGACCAAGGCAACTCTTATTTAAATGG  990

seq1  CACTGACTTACAGGTTCAGAGGTTTAGTCCATTATCAACATGGCGGGTGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTTACAGGTTCAGAGGTTTAGTCCATTATCAACATGGCGGGTGG  1040

seq1  TGTGCAAGCAGACATGGCTCTGGAGGAGTTGAGAGTTCTTGATCTGAAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGCAGACATGGCTCTGGAGGAGTTGAGAGTTCTTGATCTGAAGG  1090

seq1  CAGCAGAAGGGCACTGGAATTC  1116
      ||||||||||||||||||||||
seq2  CAGCAGAAGGGCACTGGAATTC  1112

seq1: chr13_55661575_55662148
seq2: B6Ng01-337B20.g_62_637

seq1  GAATTCCTACAGCAGGCCTTCAGCTGTTTGTTCCTAACAAGTTCACACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAGCAGGCCTTCAGCTGTTTGTTCCTAACAAGTTCACACTA  50

seq1  GGCATTAGCTGGTCACAATCCTCCCCTTAAGTCTACTGCCCTTACTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGCTGGTCACAATCCTCCCCTTAAGTCTACTGCCCTTACTTCCT  100

seq1  GTTCTCAGGACCATGTAATTTGGAAGGGCCACCCCCAAAAGCCCTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGGACCATGTAATTTGGAAGGGCCACCCCCAAAAGCCCTCAGAT  150

seq1  TCTGGTGTCTTTCTCAGGATACAAGGCGCTGTGGGGATAGGAGATTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTCTTTCTCAGGATACAAGGCGCTGTGGGGATAGGAGATTTGCC  200

seq1  ATTTCTTTGTTGTTTTGAGAAAGGGTCTCACCACCTCACCACCAGGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTGTTGTTTTGAGAAAGGGTCTCACCACCTCACCACCAGGGATG  250

seq1  GGGCATGGTGACAATGGGAGTACCTCTAATCCCAGCACTTGGGAGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGTGACAATGGGAGTACCTCTAATCCCAGCACTTGGGAGGCAGA  300

seq1  GGCAGAGGACTATCTAAAGTTTGAGGTCAGATTGATCTCCAGAGTAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGACTATCTAAAGTTTGAGGTCAGATTGATCTCCAGAGTAAGTT  350

seq1  TCAGGACAGCCTTCAGAGGCTTTACAGAGAAACCTTGTCTCAAGGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACAGCCTTCAGAGGCTTTACAGAGAAACCTTGTCTCAAGGGGAAA  400

seq1  AAGAGAGTGTGGGGTGGGGGGAGGCATTCACTATAAGCTCAGGTTACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTGTGGGGTGGGGGGAGGCATTCACTATAAGCTCAGGTTACCAC  450

seq1  CG-AACTCACAGTCTTCCTGCCTCAGCCTCCTAAGTGCTAGGGCTACAGG  499
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACTCACAGTCTTCCTGCCTCAGCCTCCTAAGTGCTAGGGCTACAGG  500

seq1  GGTGTGCCAC-TATATCTGACTCTCTTGACATTTTCATTTCTGCTTTTTT  548
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCCACTTATATCTGACTCTCTTGACATTTTCATTTCTGCTTTTTT  550

seq1  ATTTTTCTAAGTATGTTTTTATTATT  574
      ||||||||||   |||||||||||||
seq2  ATTTTTCTAAACTTGTTTTTATTATT  576