BAC Information

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BAC

Clone NameB6Ng01-338F09
Chromosome13 (Build37)13 (Build37)
Map Location 13,266,262 - 13,267,07312,758,659 - 12,759,795
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723
Downstream genePrl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338F09.bB6Ng01-338F09.g
ACCGA122673GA122674
length1,0061,120
definitionB6Ng01-338F09.b B6Ng01-338F09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,266,262 - 13,267,073)(12,758,659 - 12,759,795)
sequence
gaattcccctaatgtactttaaactaggcccgagctcacttcagggtgtc
tctatcttggtaatgggagtccccagcatgcttgactcctgcagaataaa
acattctttgtatttacatagtattttaatctggggtatcagtcttcagc
aaatcatgaacccttgtgatatgtccctaacctttctggtttctccatgt
cttcctccccatccttttaaggactccccaagctctggctatggatttct
gtatctgctcccatcagttgcaggatgaagtctctttgatgacaattgta
ttaggctttggtctcagcacaaactgtaagccaaaagtattttttaatac
tttttattcggtattttcctcattacatttccaatgctatcccaaaagtc
ccccataccctcccacccatgcctctacccacccactcccactttttggc
cctggcgttccttgtactggggcatataaagtttgcaagtccaatgggcc
tctctttccagtgatggccgactaggccatcttttgatacatatgcaact
agagtcaagagctccagggtactggttagttcataatgttgttctaccta
tagggttgcagatccctttagctacttgggtactttctctagctcctcca
ttgggggccctgtcatgtttatgtccaatcgctccacttgaggtcttgcc
tggttacagaagatggcaagtttaggctccattttttctccattactgaa
tgtctttattaaggttattcccttagattccactgagatttcctttcaat
agatttctacctcaccccccgaaatgcccctcaactctagtaatttctct
tagtattttctccctccacccctaccttggggatcccagcttggtattgc
tggggtcatagtgacatggttcctgcccttggacagtgtcccaatgtgaa
actctgcaatactatgggtataagttttgtttgtggaataatgtacatat
tttgga
gaattcaataaaagacgttgttataggactggggaagaagggaatctgga
aagcctggggctcttcccaggagaagtggagatccaggaattaggaggca
atctggggagtcagtggaacccaaagccaagctgggtgtgacaacgaagg
cctgtgcttccagcacaccagaggcgatagcaggcagatcaacagttcaa
ggacagcctctgctacactgcaaatttgaggccagtttggactatgtgag
gccatgtctcaggaaccaggagaaagaatataaaatcaccctgtggcttc
agtggtgacctttaatacaggatgtcacctcaccacggcttggctgctgg
gacatgactgctaagggtccagcaagagcgccttattaggtagagagcaa
gaggcaacttgctgtgcccctgtgggtgagtgcagatgcgcttagtcagt
gagtcctggaagcagtggggtccacaagggaggaacaagaaatgcatggc
tgtgggcatggaaaccacagacaagaacaatccctgatttgccaaaagcc
tgtgagaatcccaactttctgcgccagtgaaccccagtcactatgaaaat
ggtggacgctggatatgtgtgcccatagcacaggatcccaggctcaggag
atcacatcaccccatacaactcaaacaaacttcaggcatagggttagccc
acagacagagtcgcttttgtaaggaacatctgagtctagaaacagtccca
taggtgagaacgtctattggcaggagagggtgagtatgtcactgggagaa
gtctcatcagaggagcttcctacttcaatctgtgggcaagtctcagccct
acttgtatacttctcctgggtgacgccccacactgagctgtccccacctc
cagaggtttccatatgttcctcttcttggttttagaggcaacaggattga
cacagtgcctggttgctccatggtctgggaaggctaagtagcagctaacc
agtagttacgctaggctgaccagtagggcacgtcttctttcacttgtgac
ctctgtgacgtttgtatatgctgaccagagtgcatattaagggggtgtgc
ccctgatggaatggtgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13266262_13267073
seq2: B6Ng01-338F09.b_47_881

seq1  GAATTCCCCTAATGTACTTTAAACTAGGCCTGAGCTCACTTCAGGGTGTC  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCCCCTAATGTACTTTAAACTAGGCCCGAGCTCACTTCAGGGTGTC  50

seq1  TCTATCTTGGTAATGGGAGACCCCAGCAGGCTTGACTTCTGCAGAATAAA  100
      ||||||||||||||||||| |||||||| |||||||| ||||||||||||
seq2  TCTATCTTGGTAATGGGAGTCCCCAGCATGCTTGACTCCTGCAGAATAAA  100

seq1  ACATTCTTTGTGTTTACATAGTATTTTAATCTGGGGTATCAGTCTTCAGC  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTTGTATTTACATAGTATTTTAATCTGGGGTATCAGTCTTCAGC  150

seq1  AAATCATGGACCCTTGTGATATGTCCCTAACCTTTCTGGTTTCTCCAAGT  200
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  AAATCATGAACCCTTGTGATATGTCCCTAACCTTTCTGGTTTCTCCATGT  200

seq1  CTTCCTCCCCATCCTTTTAAGGACTCCCCAAGCTCTGGCTATGGGTTTCT  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTCCTCCCCATCCTTTTAAGGACTCCCCAAGCTCTGGCTATGGATTTCT  250

seq1  GTATCTGCTCCCATCAGTTGCAGGATGAAGTCTCTTTGATGACAATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGCTCCCATCAGTTGCAGGATGAAGTCTCTTTGATGACAATTGTA  300

seq1  TTAGGCTTTGGTCTCAGCACAAACTGTAAGCCAAAAGTATTTTTTAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTTGGTCTCAGCACAAACTGTAAGCCAAAAGTATTTTTTAATAC  350

seq1  TTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTAACCCAAAAGT  400
      |||||||| ||||||||||||| ||||||||||||||||| |||||||||
seq2  TTTTTATTCGGTATTTTCCTCA-TTACATTTCCAATGCTATCCCAAAAGT  399

seq1  CCCGCATACCCTCCCACCAATGCCCCTACCGACCCACTCCCACTTTTTGG  450
      ||| |||||||||||||| ||||| ||||| |||||||||||||||||||
seq2  CCCCCATACCCTCCCACCCATGCCTCTACCCACCCACTCCCACTTTTTGG  449

seq1  CCCTGGCATTCCCCTGTACTGGGGCATATAATGTTTGCAAATCCAGTGGG  500
      ||||||| || || ||||||||||||||||| |||||||| |||| ||||
seq2  CCCTGGCGTT-CCTTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGG  498

seq1  GCTCTCTTTTCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAA  550
       |||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  CCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAA  548

seq1  CTAGAGTCAAGAGCTCTGGGGTATTGGTTAGTTCATAATGTTGTTCTACC  600
      ||||||||||||||||  ||||| ||||||||||||||||||||||||||
seq2  CTAGAGTCAAGAGCTCCAGGGTACTGGTTAGTTCATAATGTTGTTCTACC  598

seq1  TATGGGGT------------------------TACTTTCTCTAGTTCCTC  626
      ||| ||||                        |||||||||||| |||||
seq2  TATAGGGTTGCAGATCCCTTTAGCTACTTGGGTACTTTCTCTAGCTCCTC  648

seq1  CATTGGAGGCCCTGTCATGTTTATGTCCAATCGCTCCACTTGAGGTCTTG  676
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGGCCCTGTCATGTTTATGTCCAATCGCTCCACTTGAGGTCTTG  698

seq1  CCTGGTTACAGAAGATGGCAAGTTTAGGCTCCATTTTTTCTCCATTACTG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTACAGAAGATGGCAAGTTTAGGCTCCATTTTTTCTCCATTACTG  748

seq1  AATGTCTTTATTAAGGTTATTCCCTTAGATTCCACTGAGACTTCCTTTCA  776
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATGTCTTTATTAAGGTTATTCCCTTAGATTCCACTGAGATTTCCTTTCA  798

seq1  ATAGATTTCTACCTCA-CCCCAGAAATGCCCCTCAAC  812
      |||||||||||||||| |||| |||||||||||||||
seq2  ATAGATTTCTACCTCACCCCCCGAAATGCCCCTCAAC  835

seq1: chr13_12758659_12759795
seq2: B6Ng01-338F09.g_66_1184

seq1  GAATTCAATAAAAGACGTTGTTATAGGACTGGGGAAGAAGGGAATCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAAGACGTTGTTATAGGACTGGGGAAGAAGGGAATCTGGA  50

seq1  AAGCCTGGGGCTCTTCCCAGGAGAAGTGGAGATCCAGGAATTAGGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGGGCTCTTCCCAGGAGAAGTGGAGATCCAGGAATTAGGAGGCA  100

seq1  ATCTGGGGAGTCAGTGGAACCCAAAGCCAAGCTGGGTGTGACAACGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGAGTCAGTGGAACCCAAAGCCAAGCTGGGTGTGACAACGAAGG  150

seq1  CCTGTGCTTCCAGCACACCAGAGGCGATAGCAGGCAGATCAACAGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTTCCAGCACACCAGAGGCGATAGCAGGCAGATCAACAGTTCAA  200

seq1  GGACAGCCTCTGCTACACTGCAAATTTGAGGCCAGTTTGGACTATGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCTCTGCTACACTGCAAATTTGAGGCCAGTTTGGACTATGTGAG  250

seq1  GCCATGTCTCAGGAACCAGGAGAAAGAATATAAAATCACCCTGTGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTCTCAGGAACCAGGAGAAAGAATATAAAATCACCCTGTGGCTTC  300

seq1  AGTGGTGACCTTTAATACAGGATGTCACCTCACCACGGCTTGGCTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGACCTTTAATACAGGATGTCACCTCACCACGGCTTGGCTGCTGG  350

seq1  GACATGACTGCTAAGGGTCCAGCAAGAGCGCCTTATTAGGTAGAGAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGACTGCTAAGGGTCCAGCAAGAGCGCCTTATTAGGTAGAGAGCAA  400

seq1  GAGGCAACTTGCTGTGCCCCTGTGGGTGAGTGCAGATGCGCTTAGTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACTTGCTGTGCCCCTGTGGGTGAGTGCAGATGCGCTTAGTCAGT  450

seq1  GAGTCCTGGAAGCAGTGGGGTCCACAAGGGAGGAACAAGAAATGCATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGGAAGCAGTGGGGTCCACAAGGGAGGAACAAGAAATGCATGGC  500

seq1  TGTGGGCATGGAAACCACAGACAAGAACAATCCCTGATTTGCCAAAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCATGGAAACCACAGACAAGAACAATCCCTGATTTGCCAAAAGCC  550

seq1  TGTGAGAATCCCAACTTTCTGCGCCAGTGAACCCCAGTCACTATGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAATCCCAACTTTCTGCGCCAGTGAACCCCAGTCACTATGAAAAT  600

seq1  GGTGGACGCTGGATATGTGTGCCCATAGCACAGGATCCCAGGCTCAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACGCTGGATATGTGTGCCCATAGCACAGGATCCCAGGCTCAGGAG  650

seq1  ATCACATCACCCCATACAACTCAAACAAACTTCAGGCATAGGGTTAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATCACCCCATACAACTCAAACAAACTTCAGGCATAGGGTTAGCCC  700

seq1  ACAGACAGAGTCGCTTTTGTAAGGAACATCTGAGTCTAGAAACAGTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGAGTCGCTTTTGTAAGGAACATCTGAGTCTAGAAACAGTCCCA  750

seq1  TAGGTGAGAACGTCTATTGGCAGGAGAGGGTGAGTATGTCACTGGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAGAACGTCTATTGGCAGGAGAGGGTGAGTATGTCACTGGGAGAA  800

seq1  GTCTCATCAGAGGAGCTTCCTACTTCAATCTGTGGGCAAGTCTCAGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCAGAGGAGCTTCCTACTTCAATCTGTGGGCAAGTCTCAGCCCT  850

seq1  ACTTGTATACTTCTCCTGGGTGACGCCCCACACTGAGCTGTCCCCACCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATACTTCTCCTGGGTGACGCCCCACACTGAGCTGTCCCCACCTC  900

seq1  CAGAGGTTTCCATATGTTCCTCTTCTTGGTTTTAGAGGCAACAAGATTGA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGAGGTTTCCATATGTTCCTCTTCTTGGTTTTAGAGGCAACAGGATTGA  950

seq1  CACAGTTGCCTGGTTGCTCCCATGGGTCTGGGAAGGCTAAGTAGCAGGCT  1000
      ||||| |||||||||||| |||| |||||||||||||||||||||| |||
seq2  CACAG-TGCCTGGTTGCT-CCAT-GGTCTGGGAAGGCTAAGTAGCA-GCT  996

seq1  AACCAGTAGGTTTACCGCTAGGCTGACCAGTAGGGCACGTCTTCCTTTTT  1050
      |||||||||  ||| |||||||||||||||||||||||||||||   |||
seq2  AACCAGTAG--TTA-CGCTAGGCTGACCAGTAGGGCACGTCTTC---TTT  1040

seq1  CACTTGTTGACCTCTGTGACGTTTTGTATATGCTTGACCCAGGAGGTGGC  1100
      |||||| |||||||||||||| ||||||||||| |||||    ||   ||
seq2  CACTTG-TGACCTCTGTGACG-TTTGTATATGC-TGACC----AGAGTGC  1083

seq1  ATTATTAGGGGGTGTGGCCCTGTTGGAATGGGTGTGT  1137
      ||  | |||||||||| ||||| |||||| |||||||
seq2  ATATTAAGGGGGTGTGCCCCTGATGGAAT-GGTGTGT  1119