BAC Information

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BAC

Clone NameB6Ng01-338G12
Chromosome13 (Build37)
Map Location 56,856,498 - 56,982,813
singlet/doubletdoublet
Overlap geneTrpc7
Upstream genePcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415
Downstream geneLOC100040995, Spock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338G12.bB6Ng01-338G12.g
ACCGA122721GA122722
length2371,065
definitionB6Ng01-338G12.b B6Ng01-338G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,856,498 - 56,856,734)(56,981,753 - 56,982,813)
sequence
acctgggcaaaatggcctgaagatgagttgttcatactgtggggactcag
gcttccgcgggagttggtcacttgctcagcaacccttgcctgctccactc
tcccataaagagtcaagaagagaacgtgagctggtcatgggcgactcaga
tggagaggcctgggaaaggcttggtaactagaactttctagtgggcagtc
cgagggactggggatggtgtgtgtggtgtgtgtgtgt
gaattctcacgggtcaaggcgggtcggacgagatggagaatgtaggaaca
taagaccatctacagggagcctcaacacaacgggcacggctgatggagac
tcccttctggtttctgggatcagcaccacagcttgcccctccatgaacac
agcttacgtttcagcacctctgctttttagagggtctcctggagtctagc
tacgcttcccacccccttagcagatcttcacagaacgagaaaaaaaaaaa
aatccaggctgtatatttgagctccatgattcgaaacaagtcaaaggggt
gttttcaattggaaaaacggggcaactgaaatcggataagctaagagtcc
tgctaaaatattactgtgaacagaaatttatgtgggctggaaagagacag
agaagaggagggagacagaagagggcaagcctgaccaaacacacacagat
cattttttgaaaaatatctccatgaaaagtgtcttcaacacacatacata
cacaccaccaccacacacatatacacataccacacacacacacacacacc
atacacacacaccatacaccacacacacacacacacacaccaaccacata
aaaaatgatttcccacagaagtgtaactgtcagtctgaaatatcagagat
ctaaagaaaatggggagggttgttcaaggaaattagccagtgagaagtac
cacaaattaaatcaaatggatgcacacttctctctgagaagaaaaggtta
caaggctgtgcaaattgatcagattgatcatcttagctgcacagactatt
agcacgggagatgggtgttttttttagcagtagattcgtgttttcattgt
atataaaagtctacgtgctgggttggggaagaggcaggacccagtctcac
agaatgacctcgagctaccgaactctctgaaacctcggcatgtgatgcta
gagtgtggtgtgcaagctgcaggctcaggcaggagataagcaatgaccgt
tatttgtctggtgggagacatgggcatttctccagagtcgtgaaatgagc
acagcaccccaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_56856498_56856734
seq2: B6Ng01-338G12.b_51_287

seq1  ACCTGGGCAAAATGGCCTGAAGATGAGTTGTTCATACTGTGGGGACTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCAAAATGGCCTGAAGATGAGTTGTTCATACTGTGGGGACTCAG  50

seq1  GCTTCCGCGGGAGTTGGTCACTTGCTCAGCAACCCTTGCCTGCTCCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGCGGGAGTTGGTCACTTGCTCAGCAACCCTTGCCTGCTCCACTC  100

seq1  TCCCATAAAGAGTCAAGAAGAGAACGTGAGCTGGTCATGGGCGACTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAAAGAGTCAAGAAGAGAACGTGAGCTGGTCATGGGCGACTCAGA  150

seq1  TGGAGAGGCCTGGGAAAGGCTTGGTAACTAGAACTTTCTAGTGGGCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGCCTGGGAAAGGCTTGGTAACTAGAACTTTCTAGTGGGCAGTC  200

seq1  CGAGGGACTGGGGATGGTGTGTGTGGTGTGTGTGTGT  237
      |||||||||||||||||||||||||||||||||||||
seq2  CGAGGGACTGGGGATGGTGTGTGTGGTGTGTGTGTGT  237

seq1: chr13_56981753_56982813
seq2: B6Ng01-338G12.g_67_1131 (reverse)

seq1  GGTTTGGGGTGCTGTGCTCATTTTCACGACTCTTGGAAGAATGCCCATGT  50
      |||||||||||||||||||| ||||||||||| ||||  |||||||||||
seq2  GGTTTGGGGTGCTGTGCTCA-TTTCACGACTC-TGGAGAAATGCCCATGT  48

seq1  CTCCCACCAGACAA--TACCGTCATGGCTTTATCTCTGCCCTGAGCCTGC  98
      ||||||||||||||   || ||||| || |||||||   |||||||||||
seq2  CTCCCACCAGACAAATAACGGTCATTGC-TTATCTCCTGCCTGAGCCTGC  97

seq1  AGCTTGCACACCACACTCTAGCATCACATGCCGAGGTTTCAGAGAGTTCG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCACACCACACTCTAGCATCACATGCCGAGGTTTCAGAGAGTTCG  147

seq1  GTAGCTCGAGGTCA-TCTGTGAGGCTGGGTCCTGCCTCTTCCCC-ACCCA  196
      |||||||||||||| |||||||| |||||||||||||||||||| |||||
seq2  GTAGCTCGAGGTCATTCTGTGAGACTGGGTCCTGCCTCTTCCCCAACCCA  197

seq1  GCACGTAGACTTTTATATACAATGTAAACACGAATCTACTGCT-AATAAA  245
      |||||||||||||||||||||||| |||||||||||||||||| || |||
seq2  GCACGTAGACTTTTATATACAATGAAAACACGAATCTACTGCTAAAAAAA  247

seq1  ACACCCATCT-CCGTGCTAATAGTCTGTGCAGCTAAGATGATCAATCTGA  294
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATCTCCCGTGCTAATAGTCTGTGCAGCTAAGATGATCAATCTGA  297

seq1  TCAATTTGCACAGCCTTGTAACCTTTTCTTCTCAGAGAGAAGTGTGCATC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGCACAGCCTTGTAACCTTTTCTTCTCAGAGAGAAGTGTGCATC  347

seq1  CATTTGATTTAATTTGTGGTACTTCTCACTGGCTAATTTCCTTGAACAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATTTAATTTGTGGTACTTCTCACTGGCTAATTTCCTTGAACAAC  397

seq1  CCTCCCCATTTTCTTTAGATCTCTGATATTTCAGACTGACAGTTACACTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCATTTTCTTTAGATCTCTGATATTTCAGACTGACAGTTACACTT  447

seq1  CTGTGGGAAATCATTTTTTATGTGGTTGGTGTGTGTGTGTGTGTGTGTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAAATCATTTTTTATGTGGTTGGTGTGTGTGTGTGTGTGTGTGG  497

seq1  TGTATGGTGTGTGTGTATGGTGTGTGTGTGTGTGTGTGGTATGTGTATAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTGTGTGTGTATGGTGTGTGTGTGTGTGTGTGGTATGTGTATAT  547

seq1  GTGTGTGGTGGTGGTGTGTATGTATGTGTGTTGAAGACACTTTTCATGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTGGTGGTGTGTATGTATGTGTGTTGAAGACACTTTTCATGGA  597

seq1  GATATTTTTCAAAAAATGATCTGTGTGTGTTTGGTCAGGCTTGCCCTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTTCAAAAAATGATCTGTGTGTGTTTGGTCAGGCTTGCCCTCTT  647

seq1  CTGTCTCCCTCCTCTTCTCTGTCTCTTTCCAGCCCACATAAATTTCTGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCCTCCTCTTCTCTGTCTCTTTCCAGCCCACATAAATTTCTGTT  697

seq1  CACAGTAATATTTTAGCAGGACTCTTAGCTTATCCGATTTCAGTTGCCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAATATTTTAGCAGGACTCTTAGCTTATCCGATTTCAGTTGCCCC  747

seq1  GTTTTTCCAATTGAAAACACCCCTTTGACTTGTTTCGAATCATGGAGCTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCAATTGAAAACACCCCTTTGACTTGTTTCGAATCATGGAGCTC  797

seq1  AAATATACAGCCTGGATTTTTTTTTTTTTCTCGTTCTGTGAAGATCTGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACAGCCTGGATTTTTTTTTTTTTCTCGTTCTGTGAAGATCTGCT  847

seq1  AAGGGGGTGGGAAGCGTAGCTAGACTCCAGGAGACCCTCTAAAAAGCAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGTGGGAAGCGTAGCTAGACTCCAGGAGACCCTCTAAAAAGCAGA  897

seq1  GGTGCTGAAACGTAAGCTGTGTTCATGGAGGGGCAAGCTGTGGTGCTGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGAAACGTAAGCTGTGTTCATGGAGGGGCAAGCTGTGGTGCTGAT  947

seq1  CCCAGAAACCAGAAGGGAGTCTCCATCAGCCGTGCCCGTTGTGTTGAGGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACCAGAAGGGAGTCTCCATCAGCCGTGCCCGTTGTGTTGAGGC  997

seq1  TCCCTGTAGATGGTCTTATGTTCCTACATTCTCCATCTCGTCCGACCCGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTAGATGGTCTTATGTTCCTACATTCTCCATCTCGTCCGACCCGC  1047

seq1  CTTGACCC-TGAGAATTC  1061
      |||||||| |||||||||
seq2  CTTGACCCGTGAGAATTC  1065