BAC Information

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BAC

Clone NameB6Ng01-340A02
Chromosome13 (Build37)
Map Location 80,331,067 - 80,410,576
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340A02.bB6Ng01-340A02.g
ACCGA123845GA123846
length1,1021,163
definitionB6Ng01-340A02.b B6Ng01-340A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,331,067 - 80,332,175)(80,409,410 - 80,410,576)
sequence
gaattctttgtttatctctgtaccccatttttagtagggctatttggttc
cctagagtctatcttcttgagtatattttggatattagcattctatcaga
tgtagggttggtaaagatcttttcccaatctgttgggtgccttttggtct
tttgaaaaatgtactttgccatacagaagcttttcagtttcataaggtgc
catttgccaattgctgatcttagaacttgagccattggtgttctctttag
gaatttttttcatgttctaatgtgttcaaggatatttctactttcttttc
tattggacttagtgtatctgactttatgtggaggtcttttgaatagactg
taaattatgtgaatgttttcatttatgattgaagagcaaaatattaagtt
taatgcattatatcagagcacttcaaagaagtctctgtcacacaaagagc
tcgttgaaaagtaagataagaattcggagacttgagaatatatgtggggt
gaggaaaagaaggatatattagaaaggaattccctgtatggaaatgcctt
caagaaataatagctttgtataatctctttatatattagagataaaactt
atccaataatatagagtacttataaaactaaattaaactgaaacatttct
attcacctacaaatgctatacaacagttctaataattgagtctttccact
tcatcttgactcaatgcctttgtttcatgaggcagcaaatctgctgacaa
ttcccattgatccacagatcagtggaaacaaagatttttttcatttgagg
aattcattccagggcaataaaccacaaattgctcctaacttgagattact
ggaatatttccatattcatatataccatgtgtatacaaatacacacacaa
acatataaatgtgtatgtatgtatgtatacattgtggatgggtctggtgc
tgtttgtatgttgatgctaattctgctctctggggtggggttgcaagcat
ggagtgacttcttgtgagccaatcccctaatgaataaggatcatccctgg
gcaagaggtgggatttcatctgaagaggggaagagaggaagcaggaagat
ta

gaattctcttttgacactcacgcttgcaagtgcccaagaagcaaaatgca
tcttctttagaggcaccaatgtgagctttaggttcacaatgaaatttctt
aaaaatcaaatgaatcctgtaaaatacaagaattttaatgaaatttagga
atagatagttttaataagttgttgtaagtctagttttttataaatatcta
ctacataatagggacagcatatcactagaaggcttattttagattaatcc
tatagtggggttcttcttttccagtaatagaaacaagaaacaatctttct
ttaacggtgtctaaataaacacagtattataggatgaatcttctccagga
tgagagaatattgggatcaaaaatgctcaagtttcatttcatacatgagt
aaaaataaactaggtaaccctgtataagtgccaaaggaatcatgaaatat
gtatacacacacacacacatgcacacacacacacacacacacacacacac
acacaccccaaatatctggaagcattgatttctggagtgctgtgccaaaa
gcagtcttcttgaaggtcaaattttctaaggtattagtaagaatcaatgg
acagaaggaataggctccttgaattttgaatataatatgtgcatcattat
ttattattaaaaggatagctagatatcaaatatgataacttaaaaaaatg
aaggcctagagtgcctgcagcacaaatctaataagttcataaaacagcac
tgaagaggcaagaccactccccaagatggtcagctacttcatcacaggac
ctggcctgtccaggcttcattattttctatgcagtactttccccaaaact
ttacctttagtaattataagatttccataattagagaagtataaatgttt
tatagatttaatcctaaaaaggctgttaggtaagtacatcacacagaaaa
tagattcatttccaactattgaataccaaaatacagcaccaaatcagttg
tgacaatttttgttcctgtaatattataggaaagagcgagctctcctcat
cgaacatgaacatacatacatatgtacatgccagacatatatcacatacc
atcttacatactataaccaggcactttattaaagacaagtttaattcaag
tctcattaacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80331067_80332175
seq2: B6Ng01-340A02.b_43_1144

seq1  GAATTCTTTGTTTATCTCTGTACCCCATTTTTAGTAGGGCTATTTGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTATCTCTGTACCCCATTTTTAGTAGGGCTATTTGGTTC  50

seq1  CCTAGAGTCTATCTTCTTGAGTATATTTTGGATATTAGCATTCTATCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGTCTATCTTCTTGAGTATATTTTGGATATTAGCATTCTATCAGA  100

seq1  TGTAGGGTTGGTAAAGATCTTTTCCCAATCTGTTGGGTGCCTTTTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGTTGGTAAAGATCTTTTCCCAATCTGTTGGGTGCCTTTTGGTCT  150

seq1  TTTGAAAAATGTACTTTGCCATACAGAAGCTTTTCAGTTTCATAAGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAATGTACTTTGCCATACAGAAGCTTTTCAGTTTCATAAGGTGC  200

seq1  CATTTGCCAATTGCTGATCTTAGAACTTGAGCCATTGGTGTTCTCTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCAATTGCTGATCTTAGAACTTGAGCCATTGGTGTTCTCTTTAG  250

seq1  GAATTTTTTTCATGTTCTAATGTGTTCAAGGATATTTCTACTTTCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTTCATGTTCTAATGTGTTCAAGGATATTTCTACTTTCTTTTC  300

seq1  TATTGGACTTAGTGTATCTGACTTTATGTGGAGGTCTTTTGAATAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGACTTAGTGTATCTGACTTTATGTGGAGGTCTTTTGAATAGACTG  350

seq1  TAAATTATGTGAATGTTTTCATTTATGATTGAAGAGCAAAATATTAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATGTGAATGTTTTCATTTATGATTGAAGAGCAAAATATTAAGTT  400

seq1  TAATGCATTATATCAGAGCACTTCAAAGAAGTCTCTGTCACACAAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATTATATCAGAGCACTTCAAAGAAGTCTCTGTCACACAAAGAGC  450

seq1  TCGTTGAAAAGTAAGATAAGAATTCGGAGACTTGAGAATATATGTGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGAAAAGTAAGATAAGAATTCGGAGACTTGAGAATATATGTGGGGT  500

seq1  GAGGAAAAGAAGGATATATTAGAAAGGAATTCCCTGTATGGAAATGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAGAAGGATATATTAGAAAGGAATTCCCTGTATGGAAATGCCTT  550

seq1  CAAGAAATAATAGCTTTGTATAATCTCTTTATATATTAGAGATAAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATAATAGCTTTGTATAATCTCTTTATATATTAGAGATAAAACTT  600

seq1  ATCCAATAATATAGAGTACTTATAAAACTAAATTAAACTGAAACATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATAATATAGAGTACTTATAAAACTAAATTAAACTGAAACATTTCT  650

seq1  ATTCACCTACAAATGCTATACAACAGTTCTAATAATTGAGTCTTTCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTACAAATGCTATACAACAGTTCTAATAATTGAGTCTTTCCACT  700

seq1  TCATCTTGACTCAATGCCTTTGTTTCATGAGGCAGCAAATCTGCTGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGACTCAATGCCTTTGTTTCATGAGGCAGCAAATCTGCTGACAA  750

seq1  TTCCCATTGATCCACAGATCAGTGGAAACAAAGATTTTTTTCATTTGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGATCCACAGATCAGTGGAAACAAAGATTTTTTTCATTTGAGG  800

seq1  AATTCATTCCAGGGCAATAAACCACAAATTGCTCCTAACTTGAGATTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCCAGGGCAATAAACCACAAATTGCTCCTAACTTGAGATTACT  850

seq1  GGAATATTTCCATATTCATATATACCATGTGTATACAAATACACACACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTCCATATTCATATATACCATGTGTATACAAATACACACACAA  900

seq1  ACATATAAATGTGTATGTATGTATGTATACATTGTGGATGGGTCTGGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAATGTGTATGTATGTATGTATACATTGTGGATGGGTCTGGTGC  950

seq1  TGTTTGTATGTTGATGCTAATTCTGCTCTCCTGGGTGGGGTTGCAGGCAT  1000
      ||||||||||||||||||||||||||||||  ||||||||||||| ||||
seq2  TGTTTGTATGTTGATGCTAATTCTGCTCTCTGGGGTGGGGTTGCAAGCAT  1000

seq1  GGAGTGACTTCTTGTGAGCCAATCCCCTAATGAATAAAGGATCCAATCAC  1050
      ||||||||||||||||||||||||||||||||||| |||||||  ||| |
seq2  GGAGTGACTTCTTGTGAGCCAATCCCCTAATGAAT-AAGGATC--ATCCC  1047

seq1  TGGGCAAGAAGGTGGGATTTCCATCTTGGAGAGGGGAAGAGAGGAAGCAG  1100
      |||||||| ||||||||||| |||| || |||||||||||||||||||||
seq2  TGGGCAAG-AGGTGGGATTT-CATC-TGAAGAGGGGAAGAGAGGAAGCAG  1094

seq1  GAGAGATTA  1109
      || ||||||
seq2  GA-AGATTA  1102


seq1: chr13_80409410_80410576
seq2: B6Ng01-340A02.g_64_1226 (reverse)

seq1  TCTGTTAATGTAGATTTGTATTTTTAAACTTGTCTTTATTAAAGTG-CTT  49
      |||||||||| ||| ||| |   ||||||||||||||| ||||||| || 
seq2  TCTGTTAATG-AGACTTGAA---TTAAACTTGTCTTTAATAAAGTGCCTG  46

seq1  GTTATATGTATGTATGTATGTATGTGATATATGTCT-GCATGTACATATG  98
      |||||| ||||||| |   ||||||||||||||||| |||||||||||||
seq2  GTTATA-GTATGTAAGATGGTATGTGATATATGTCTGGCATGTACATATG  95

seq1  TATGTATGTTCATGTTTGGATGAGGAGAGCTCGCTCTTTCCTATAATATT  148
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  TATGTATGTTCATG-TTCGATGAGGAGAGCTCGCTCTTTCCTATAATATT  144

seq1  ACAGGAAC-AAAATTGTCACAACTGATTTGGTGCTGTATTTTGGTATTCA  197
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACAAAAATTGTCACAACTGATTTGGTGCTGTATTTTGGTATTCA  194

seq1  ATAGTTGGAAATGAATCTATTTTTCTGTGTGATGTACTTACCTAACAGCC  247
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAGTTGGAAATGAATCTA-TTTTCTGTGTGATGTACTTACCTAACAGCC  243

seq1  TTTTTAGGATTAAATCTATAAAACATTTATACTTCTCTAATTATGGAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGATTAAATCTATAAAACATTTATACTTCTCTAATTATGGAAAT  293

seq1  CTTATAATTACTAAAGGTAAAGTTTTGGGGAAAGTACTGCATAGAAAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATTACTAAAGGTAAAGTTTTGGGGAAAGTACTGCATAGAAAATA  343

seq1  ATGAAGCCTGGACAGGCCAGGTCCTGTGATGAAGTAGCTGACCATCTTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCTGGACAGGCCAGGTCCTGTGATGAAGTAGCTGACCATCTTGG  393

seq1  GGAGTGGTCTTGCCTCTTCAGTGCTGTTTTATGAACTTATTAGATTTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGTCTTGCCTCTTCAGTGCTGTTTTATGAACTTATTAGATTTGTG  443

seq1  CTGCAGGCACTCTAGGCCTTCATTTTTTTAAGTTATCATATTTGATATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCACTCTAGGCCTTCATTTTTTTAAGTTATCATATTTGATATCT  493

seq1  AGCTATCCTTTTAATAATAAATAATGATGCACATATTATATTCAAAATTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCTTTTAATAATAAATAATGATGCACATATTATATTCAAAATTC  543

seq1  AAGGAGCCTATTCCTTCTGTCCATTGATTCTTACTAATACCTTAGAAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCTATTCCTTCTGTCCATTGATTCTTACTAATACCTTAGAAAAT  593

seq1  TTGACCTTCAAGAAGACTGCTTTTGGCACAGCACTCCAGAAATCAATGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTCAAGAAGACTGCTTTTGGCACAGCACTCCAGAAATCAATGCT  643

seq1  TCCAGATATTTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATATTTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC  693

seq1  ATGTGTGTGTGTGTGTATACATATTTCATGATTCCTTTGGCACTTATACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTGTATACATATTTCATGATTCCTTTGGCACTTATACA  743

seq1  GGGTTACCTAGTTTATTTTTACTCATGTATGAAATGAAACTTGAGCATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACCTAGTTTATTTTTACTCATGTATGAAATGAAACTTGAGCATTT  793

seq1  TTGATCCCAATATTCTCTCATCCTGGAGAAGATTCATCCTATAATACTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCAATATTCTCTCATCCTGGAGAAGATTCATCCTATAATACTGT  843

seq1  GTTTATTTAGACACCGTTAAAGAAAGATTGTTTCTTGTTTCTATTACTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTAGACACCGTTAAAGAAAGATTGTTTCTTGTTTCTATTACTGG  893

seq1  AAAAGAAGAACCCCACTATAGGATTAATCTAAAATAAGCCTTCTAGTGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAACCCCACTATAGGATTAATCTAAAATAAGCCTTCTAGTGAT  943

seq1  ATGCTGTCCCTATTATGTAGTAGATATTTATAAAAAACTAGACTTACAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCCCTATTATGTAGTAGATATTTATAAAAAACTAGACTTACAAC  993

seq1  AACTTATTAAAACTATCTATTCCTAAATTTCATTAAAATTCTTGTATTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTAAAACTATCTATTCCTAAATTTCATTAAAATTCTTGTATTTT  1043

seq1  ACAGGATTCATTTGATTTTTAAGAAATTTCATTGTGAACCTAAAGCTCAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTCATTTGATTTTTAAGAAATTTCATTGTGAACCTAAAGCTCAC  1093

seq1  ATTGGTGCCTCTAAAGAAGATGCATTTTGCTTCTTGGGCACTTGCAAGCG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGCCTCTAAAGAAGATGCATTTTGCTTCTTGGGCACTTGCAAGCG  1143

seq1  TGAGTGTCAAAAGAGAATTC  1167
      ||||||||||||||||||||
seq2  TGAGTGTCAAAAGAGAATTC  1163


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