BAC Information

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BAC

Clone NameB6Ng01-341J09
Chromosome13 (Build37)
Map Location 4,109,031 - 4,109,903
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14
Downstream geneAkr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341J09.bB6Ng01-341J09.g
ACCGA124926GA124927
length1,1271,146
definitionB6Ng01-341J09.b B6Ng01-341J09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcactgcactcaacagtcacttccttggactcaggaaagtggct
ctactgacctcaggagaaccttaattgatttccattttgactatgttaat
cctactgatccatgaacatgggagatctatcttctgatatcttatccagt
ttctttcctgaatgaataaaagttttgttatacaactctttcacttgctt
gttcaagttaaccaaagatattttatattactttgtgactattgtgaaag
gtgttgtttccctgatttcttttctagtccatttgttatttttatatagg
agagctactgatttttatgagttaattttgtatccagcaactttgctgaa
agggtttattagctataggagtttcctggtcgaatttttcgggcccttga
tatattatatagtatagtatgatctgtaaataaaaatattttgtcttatt
cctttccaatttatatccccttgatctcctttagatttcttattacttta
gttaaaacttcaagtactatattgaatagaaatggagagagtggccagtc
ttgtattgttcctgattttactggaattgctttaagtttctctccattta
atttgattgttggctatctgactggtaaaaactgccatttagcttaggta
tgtaccttgtatctataatcactctagtagctttagcaagaaggggtgtt
ggatttagtcaaaggccttttctaaatctattgagataataaggtgtttt
tttcttctccctttcagttcatatttatttatttatttatttataaatat
atagtacatttaatgttaattgtcgctcagtaaagctgttaaaagagcag
caacaacaaagcccccaggactcaggcctctcatcccaatgagatttgct
actcaagccctttatagggtcagtgccttattttgtcagtcactgctcta
ggctggccatgtttctttctccaagtgctaggattatagtctaatcaaca
actcctgactagttatcagcagtttcagtggcagtcctgaaagcttctcc
aagaagtctctcctctcaagcactaactggattaggatataatagaagcg
agggagtctggaagacaatccaagaag
gaattcctacacctgataaacactttctgcaaagtagctggatacaaaat
taactcacaaaaatcaaatagcactcctatatagaaatgataaatggggt
tcaggtgtggacagggggctgggattaaaaatggaaattgatggggggca
cttatgaggctagctggagatctgtgactgagaagacttcctctagttta
taggggtgaccctagctgagacttcaagcagcggcaaatgggcaaatgca
gagagtgaaaaggacagttccagtagccaggtgggacttctagtggaggg
agggggactcaagaaagaaagaaagacaacttcagaccagtttcctttag
aaacattgacacaacagtactcaatacaatttttgcaaatcaaatctaac
atcacattaaaaacatcacatcaaaatgatttacccttgatcaagtagtc
ttcaagtagtgatggttctaaatctatcaatgtaatccactatataaaca
aacaaacaaacaaaaaatacagataaaaaaatcatatgatcatctcatta
gatggtgaaatctaacaccttatcaggttaaaagtcttggagagatcaaa
gatacaaggcacatacttaaacagaagaaaagccaaaaacagcaagccaa
tagccaacatcaaattgaatggaaacgtagagcaattccacttaaatcag
ggacaaggcaaggctacctactccctgtctactcaatacagtgtgaagtt
ctagctaaagcaaaaatacaacaaaagatcaaggggttaaaaattggaaa
ggacagctatgctaggctgggcatcagtaatagtgtcaggtttggtgtcc
accaaaggggatggatcccaggtgaaggtgtcattggatgggcctttcct
gtaatctttgctgtatttttatcctcagtatttctttagtcagaagaatt
atgggtcaaaattttgaagctagcttgtgaccccatactcactgagagcc
ctgtctgtttactgatagacattggttctacattggcatttcagctagtc
atacccaatgagtcctgaagcctctcaacccaagttatctggaacttgaa
ggttacccaactctgagtgccatttccatcaattctcttagccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4109031_4109903
seq2: B6Ng01-341J09.b_303_1171

seq1  TCCCTGATTTCTTTTCTAGTCCATTTGTTATTTTTATATAGGAGAGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTTCTTTTCTAGTCCATTTGTTATTTTTATATAGGAGAGCTAC  50

seq1  TGATTTTTATGAGTTAATTTTGTATCCAGCAACTTTGCTGAAAGGGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTATGAGTTAATTTTGTATCCAGCAACTTTGCTGAAAGGGTTTA  100

seq1  TTAGCTATAGGAGTTTCCTGGTCGAATTTTTCGGGCCCTTGATATATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATAGGAGTTTCCTGGTCGAATTTTTCGGGCCCTTGATATATTAT  150

seq1  ATAGTATAGTATGATCTGTAAATAAAAATATTTTGTCTTATTCCTTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATAGTATGATCTGTAAATAAAAATATTTTGTCTTATTCCTTTCCA  200

seq1  ATTTATATCCCCTTGATCTCCTTTAGATTTCTTATTACTTTAGTTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATCCCCTTGATCTCCTTTAGATTTCTTATTACTTTAGTTAAAAC  250

seq1  TTCAAGTACTATATTGAATAGAAATGGAGAGAGTGGCCAGTCTTGTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTACTATATTGAATAGAAATGGAGAGAGTGGCCAGTCTTGTATTG  300

seq1  TTCCTGATTTTACTGGAATTGCTTTAAGTTTCTCTCCATTTAATTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATTTTACTGGAATTGCTTTAAGTTTCTCTCCATTTAATTTGATT  350

seq1  GTTGGCTATCTGACTGGTAAAAACTGCCATTTAGCTTAGGTATGTACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTATCTGACTGGTAAAAACTGCCATTTAGCTTAGGTATGTACCTT  400

seq1  GTATCTATAATCACTCTAGTAGCTTTAGCAAGAAGGGGTGTTGGATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTATAATCACTCTAGTAGCTTTAGCAAGAAGGGGTGTTGGATTTAG  450

seq1  TCAAAGGCCTTTTCTAAATCTATTGAGATAATAAGGTGTTTTTTTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCCTTTTCTAAATCTATTGAGATAATAAGGTGTTTTTTTCTTCT  500

seq1  CCCTTTCAGTTCATATTTATTTATTTATTTATTTATAAATATATAGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCAGTTCATATTTATTTATTTATTTATTTATAAATATATAGTACA  550

seq1  TTTAATGTTAATTGTCGCTCAGTAAAGCTGTTAAAAGAGCAGCAACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTTAATTGTCGCTCAGTAAAGCTGTTAAAAGAGCAGCAACAACA  600

seq1  AAGCCCCCAGGACTCAGGCCTCTCATCCCAA-GAGATTTGCTACTCAAGC  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGCCCCCAGGACTCAGGCCTCTCATCCCAATGAGATTTGCTACTCAAGC  650

seq1  CCTTTATAGGGTCAGTGCCTTATTTTGTCAGTCACTGCTCTAGGCTGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATAGGGTCAGTGCCTTATTTTGTCAGTCACTGCTCTAGGCTGGCC  700

seq1  ATGTTTCTTTCTCCCAAGTGCTAGGATTATAGTTCTAATCAAC-ACTCCT  748
      |||||||||||| ||||||||||||||||||| |||||||||| ||||||
seq2  ATGTTTCTTTCT-CCAAGTGCTAGGATTATAG-TCTAATCAACAACTCCT  748

seq1  GACCTAG-TATCAGCAGTTTCCAGTGGCAGTCCTGAAAGCCTTCTTCCCA  797
      || |||| |||||||||||| |||||||||||||||||| |||| ||| |
seq2  GA-CTAGTTATCAGCAGTTT-CAGTGGCAGTCCTGAAAG-CTTC-TCCAA  794

seq1  G-AGTCTCT-CTCTCAAAGCACTAACTGGATTAGGA-ATAATAGGAAGCA  844
      | ||||||| ||||| |||||||||||||||||||| |||||| ||||| 
seq2  GAAGTCTCTCCTCTC-AAGCACTAACTGGATTAGGATATAATA-GAAGC-  841

seq1  GAGGGAGGTCTGGAAGACAATCCAAGAAG  873
      |||||| ||||||||||||||||||||||
seq2  GAGGGA-GTCTGGAAGACAATCCAAGAAG  869