BAC Information

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BAC

Clone NameB6Ng01-343H13
Chromosome13 (Build37)
Map Location 73,037,640 - 73,170,490
singlet/doubletdoublet
Overlap genenone
Upstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343H13.bB6Ng01-343H13.g
ACCGA126237GA126238
length8341,168
definitionB6Ng01-343H13.b B6Ng01-343H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,169,656 - 73,170,490)(73,037,640 - 73,038,801)
sequence
gaattctcaggaaagcctcagagggggcaatagtgcaactggaggctgag
gggagtaaacagcattggttgtgcatgcaaactttcctccttctctgtaa
agcactcagatcctgtctcctgtcagcagccctcttcattctgggtccct
ttgaaagaagaggactaatttttttttaaagaaagttccccccttactat
aattaataaattgatattgtaagtaaaggtttggtaaatattttaattaa
aatacttgtgcatgtatggagcctatgtaatctttcatacttcgcagagc
tgaatgcatgcagtagtttaccctgtggccttgtttcgtttcattgtgat
caaaactcttcttccttccttccttccttccttccttccatacatacttc
cccactaactcctgccctacccggacccatccgtcccgccatccctctct
cacttcctggggatgatcagaatgcagcgcccactggactaaggggcagg
gtaatcctgactaaaggactggatggatcggagtgatgtaagcctgcctc
tgccttgaagcctgggatcaaaggtgtgtccaccatagtgggcagaccgt
ttcattttcaccgctaaacgagcggattttctcagctattatgagattct
acgatataggggcatttagatgctcccccttttctgagccatgtacaact
ccaaatctaaaacacgcagcaaacttacaaaattactggtgctctaagtg
gagcagtgacattctggaagttattcatttttgttcaggtaaaatgacag
atgatttccttcttggtagcagacctattgcttt
gaattcatttttttccagatcactctagcttgtgacaagtttatttaaat
caatatttgtatccctttatctccttctcttgtcttatttctctagctaa
gaattcagcactgcattgaacaggagtagagacagagtatgtatccttgt
tttgttcttgattcatgtgtaaaaagaattaaaaagatggaattcgcaga
aaaacaaatggagttggaaatcatcattctgaatgaggcaacccaaactc
ggaaaaacaaaccttgtgtgcttccttacatacagacgctagctttagct
ttgcatttctatctacgtgtgtgaaaatgaaagtactcacagatatcaag
caacatgtaagaaaccatagtcaggagatttcaaggcaaggcagaactct
ggttacatgaagaaagaatgtggagttatgatatatgttggtttgggtga
tgaaacccacgcgtggagaaaaactaggagtcagagtctcagccctgaga
atctattgacaagtagggactattggttgagagacagtcaattttcttca
gacactggcccctgaaaggctacacatgctccaatgagagatcctagctc
atgtacatgttgaaagtactacatgcatgcagtgagtaaaagaagcaata
cataaaattgggagcctatagaggatggacatcctgaaggaactgaagaa
aaggaagggctagatttgataaaacacatccatatatgtatggcattcct
aaacaataaaaatacaaaaacctattaaattcttaacaaaagaacatttc
agccaatttccctacttctgtgcttgcatttgttgttggcattagtagac
atgcagtcttaatgtacaatgattagtgctcacagtactgaatcctggct
cactggggagccaatgaaaatgttattgtgagaaagtctgtgtacccctt
gtggtgtgcatcaacatgcatagctgcttctcatcttaagtccagaacat
acaaacaaatccaacttggtggtagaaaaatggtgatcatcataaagctg
tacttcgtgggcaaggagaggttctgaattcttgttcttccattcctcaa
ctggtccaagagtgggcaccaattcaggttcaacctgcagtttcagaagg
ttcacttgaaagccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_73169656_73170490
seq2: B6Ng01-343H13.b_47_880 (reverse)

seq1  AAAGGAATAGG-CTGCCACCAAGAAGGAAGCCCGGTGCCAGTCTAACAGA  49
      |||| |||||| |||| ||||||||||||  |   || || | || | ||
seq2  AAAGCAATAGGTCTGCTACCAAGAAGGAAATCATCTGTCATTTTACCTGA  50

seq1  AC-AAAATGTATGACTTCCAGAATGTCACTGCCCCACATCAGAGGCCAGG  98
      || |||||| || ||||||||||||||||||| |||| | ||||  |  |
seq2  ACAAAAATGAATAACTTCCAGAATGTCACTGCTCCAC-TTAGAGCACCAG  99

seq1  TATTTCTGTAAGATTGCTGGCGTGTTTTGAATTTTGAGCTGGACATGGCT  148
      || || |||||| ||||| |||||||||  |||| ||| || ||||||||
seq2  TAATTTTGTAAGTTTGCT-GCGTGTTTTAGATTTGGAGTTGTACATGGCT  148

seq1  -GGGAAAGGGGGAGCATCTAAATGCCCCCATATCGTCAAATCTCCTAATA  197
        | |||||||||||||||||||||||| |||||||  |||||| |||||
seq2  CAGAAAAGGGGGAGCATCTAAATGCCCCTATATCGTAGAATCTCATAATA  198

seq1  GCTAAGAAAATCTGCTTGTTTAGCCTTGAAAATGAAATGCTCTACCAACT  247
      ||| |||||||| ||| |||||||  ||||||||||| | ||| || |||
seq2  GCTGAGAAAATCCGCTCGTTTAGCGGTGAAAATGAAACGGTCTGCCCACT  248

seq1  ATGGTGGTACACACCTTTGATCCCAGAACTTTTAAGGCAGAGGCAGGC--  295
      ||||||| ||||||||||||||||||    || |||||||||||||||  
seq2  ATGGTGG-ACACACCTTTGATCCCAG--GCTTCAAGGCAGAGGCAGGCTT  295

seq1  AGATCTCTGCATGTCTCAGCCTGGCCTACA-TCATATATTCCAATCTAGC  344
      | ||| || |  |   || || | |||  | |||    | ||   |    
seq2  ACATCACTCC--GATCCATCCAGTCCTTTAGTCAGGATTACCCTGCCCCT  343

seq1  TAGGGTTACATAAGGC---CCAGTCAAAAGAAAGAAAGAAAGAGAGAGAG  391
      |||   | ||   |||    || ||  |  |     || ||| |||||||
seq2  TAG---TCCAGTGGGCGCTGCATTCTGATCATCCCCAGGAAGTGAGAGAG  390

seq1  GGAGGGAGGGAGGGAGGGAGGCAGGGAGGAAGGAAGGAAGGAAGGAAGGA  441
      ||| || |||| ||| ||   | || |||   | ||  ||   ||||| |
seq2  GGATGGCGGGACGGATGGGTCCGGGTAGGGCAGGAGTTAGTGGGGAAGTA  440

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAGAGTTTTGATCACA  491
       | | |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAGAGTTTTGATCACA  490

seq1  ATGAAACGAAACAAGGCCACAGGGTAAACTACTGCATGCATTCAGCTCTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACGAAACAAGGCCACAGGGTAAACTACTGCATGCATTCAGCTCTG  540

seq1  CGAAGTATGAAAGATTACATAGGCTCCATACATGCACAAGTATTTTAATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTATGAAAGATTACATAGGCTCCATACATGCACAAGTATTTTAATT  590

seq1  AAAATATTTACCAAACCTTTACTTACAATATCAATTTATTAATTATAGTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTACCAAACCTTTACTTACAATATCAATTTATTAATTATAGTA  640

seq1  AGGGGGGAACTTTCTTTAAAAAAAAATTAGTCCTCTTCTTTCAAAGGGAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGAACTTTCTTTAAAAAAAAATTAGTCCTCTTCTTTCAAAGGGAC  690

seq1  CCAGAATGAAGAGGGCTGCTGACAGGAGACAGGATCTGAGTGCTTTACAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGAAGAGGGCTGCTGACAGGAGACAGGATCTGAGTGCTTTACAG  740

seq1  AGAAGGAGGAAAGTTTGCATGCACAACCAATGCTGTTTACTCCCCTCAGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGGAAAGTTTGCATGCACAACCAATGCTGTTTACTCCCCTCAGC  790

seq1  CTCCAGTTGCACTATTGCCCCCTCTGAGGCTTTCCTGAGAATTC  835
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTGCACTATTGCCCCCTCTGAGGCTTTCCTGAGAATTC  834

seq1: chr13_73037640_73038801
seq2: B6Ng01-343H13.g_67_1234

seq1  GAATTCATTTTTTTCCAGATCACTCTAGCTTGTGACAAGTTTATTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTTTCCAGATCACTCTAGCTTGTGACAAGTTTATTTAAAT  50

seq1  CAATATTTGTATCCCTTTATCTCCTTCTCTTGTCTTATTTCTCTAGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTGTATCCCTTTATCTCCTTCTCTTGTCTTATTTCTCTAGCTAA  100

seq1  GAATTCAGCACTGCATTGAACAGGAGTAGAGACAGAGTATGTATCCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTGCATTGAACAGGAGTAGAGACAGAGTATGTATCCTTGT  150

seq1  TTTGTTCTTGATTCATGTGTAAAAAGAATTAAAAAGATGGAATTCGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTGATTCATGTGTAAAAAGAATTAAAAAGATGGAATTCGCAGA  200

seq1  AAAACAAATGGAGTTGGAAATCATCATTCTGAATGAGGCAACCCAAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATGGAGTTGGAAATCATCATTCTGAATGAGGCAACCCAAACTC  250

seq1  GGAAAAACAAACCTTGTGTGCTTCCTTACATACAGACGCTAGCTTTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACAAACCTTGTGTGCTTCCTTACATACAGACGCTAGCTTTAGCT  300

seq1  TTGCATTTCTATCTACGTGTGTGAAAATGAAAGTACTCACAGATATCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCTATCTACGTGTGTGAAAATGAAAGTACTCACAGATATCAAG  350

seq1  CAACATGTAAGAAACCATAGTCAGGAGATTTCAAGGCAAGGCAGAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTAAGAAACCATAGTCAGGAGATTTCAAGGCAAGGCAGAACTCT  400

seq1  GGTTACATGAAGAAAGAATGTGGAGTTATGATATATGTTGGTTTGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACATGAAGAAAGAATGTGGAGTTATGATATATGTTGGTTTGGGTGA  450

seq1  TGAAACCCACGCGTGGAGAAAAACTAGGAGTCAGAGTCTCAGCCCTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCACGCGTGGAGAAAAACTAGGAGTCAGAGTCTCAGCCCTGAGA  500

seq1  ATCTATTGACAAGTAGGGACTATTGGTTGAGAGACAGTCAATTTTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGACAAGTAGGGACTATTGGTTGAGAGACAGTCAATTTTCTTCA  550

seq1  GACACTGGCCCCTGAAAGGCTACACATGCTCCAATGAGAGATCCTAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGGCCCCTGAAAGGCTACACATGCTCCAATGAGAGATCCTAGCTC  600

seq1  ATGTACATGTTGAAAGTACTACATGCATGCAGTGAGTAAAAGAAGCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATGTTGAAAGTACTACATGCATGCAGTGAGTAAAAGAAGCAATA  650

seq1  CATAAAATTGGGAGCCTATAGAGGATGGACATCCTGAAGGAACTGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTGGGAGCCTATAGAGGATGGACATCCTGAAGGAACTGAAGAA  700

seq1  AAGGAAGGGCTAGATTTGATAAAACACATCCATATATGTATGGCATTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGCTAGATTTGATAAAACACATCCATATATGTATGGCATTCCT  750

seq1  AAACAATAAAAATACAAAAACCTATTAAATTCTTAACAAAAGAACATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAAAAATACAAAAACCTATTAAATTCTTAACAAAAGAACATTTC  800

seq1  AGGCCAATTTCCCTACTTCTGTGCTTGCATTTGTTGTTGGCATTAGTAGA  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GCCAATTTCCCTACTTCTGTGCTTGCATTTGTTGTTGGCATTAGTAGA  849

seq1  CATGCAGTCTTAATGTACAATGATTAGTGCTCACAGTACTGAATCCTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTCTTAATGTACAATGATTAGTGCTCACAGTACTGAATCCTGGC  899

seq1  TCACTGGGGAGCCAATGAAAATG-TATTGTGAGAAAGTCTGTGTACCCCT  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCACTGGGGAGCCAATGAAAATGTTATTGTGAGAAAGTCTGTGTACCCCT  949

seq1  TGTGGTGTGCATCAACATGCATAGCTGCTTCCTCATCTTAAGTCCAGACA  999
      |||||||||||||||||||||||||||||| |||||||||||||||||  
seq2  TGTGGTGTGCATCAACATGCATAGCTGCTT-CTCATCTTAAGTCCAGAAC  998

seq1  ATACAAACAAATCCCAAACTT-GTGGTAG-AAAATGGTGATCATCATAAA  1047
      ||||||||||||||  ||||| ||||||| ||||||||||||||||||||
seq2  ATACAAACAAATCC--AACTTGGTGGTAGAAAAATGGTGATCATCATAAA  1046

seq1  GCTGTACTTCGTGGGCAAGGAAGAGG-TCTGAATTC-TGTTC-TCCAT--  1092
      |||||||||||||||||||| ||||| ||||||||| ||||| |||||  
seq2  GCTGTACTTCGTGGGCAAGG-AGAGGTTCTGAATTCTTGTTCTTCCATTC  1095

seq1  CTCAACTG--TCAAGAGTGGGCACC-ATTCAGGTCACAACTGCAGTGTTT  1139
      ||||||||   |||||||||||||| ||||||||   | |||||  ||||
seq2  CTCAACTGGTCCAAGAGTGGGCACCAATTCAGGTTCAACCTGCA--GTTT  1143

seq1  CAGAA-GTCAACTTG-GAGCCATGG  1162
      ||||| ||  |||||  ||||||||
seq2  CAGAAGGTTCACTTGAAAGCCATGG  1168