BAC Information

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BAC

Clone NameB6Ng01-343H17
Chromosome13 (Build37)
Map Location 88,718,721 - 88,847,401
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675707, LOC667230, EG435375
Downstream geneEdil3, Hapln1, EG667266, Vcan
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343H17.bB6Ng01-343H17.g
ACCGA126245GA126246
length9171,178
definitionB6Ng01-343H17.b B6Ng01-343H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,846,485 - 88,847,401)(88,718,721 - 88,719,605)
sequence
gaattcattgccctgaaattgtaggactaagttcttctgctcctgcttgc
ctggggttgcagttttctgtctgcacagttaggcggtttacttctcttca
accacagagaaagtgactcaagcatttcaattcacttctcagtttgactt
cttgctcttttaagagagcttatcagattaggggaggacatctaacaaga
tcttccttttgattaaagtctgctctctaaaagctttaattatatctcca
aatccattcactttgctacataaactaattacagaagtgatttctgttat
ttgctgggccttcccacagttaaagcgaatgtccaacacaatgtctcttc
cagggtcattggaagccagaattttttcaaagaattaataatatgaggag
tacattattgtaaataattacaatggaattgatatatctacagtatgttg
ttataaacacataatttacagtgcatgtcatttcagaaaaaaattactaa
tttttatttgattaaaatgactttaaacctggtgaaacaatattaatttt
acattttggctacaaaaatatgacagcattttgtgagatggtattaattg
ctcaactgaattttagaatttgatacaacagttaggatactcttatactt
tcatttaattgtagtatctgaacaaaataaatttatatgtatttgtttag
tgtaaagaaaaacaggccagttggctgtggcagtgcacagcttttatacc
agcagtcaagaggcagaggcagagagatctttgagtttaattctagccta
gtctatagagcaagttccagaagagccagggctatacagaaaaatcttga
cttgaaaaacaaaatacaaaagaaacagagagggagagagagagagagag
ggagagagagagagaga

gaattcagaattatattcatactcatgctaagtaataatataatgaatta
cattcgcctcctgtatatgttttcaaagttaaacctgaaacaggtagaaa
caagaaaacttttttagtttatatatacttaataaataatggttctcaaa
tgcttcagacatctataaaacatcgcatttaaagtgtttaacaagcaaac
ttatgttagagagacatggcatctcctggaagcagtctactctcctccag
agatgaagaggaaaaaagaacctggagctagttttaaatgtggcaaagca
ggccaccggacaaaaaactggtctacacctcaactgctgattcatcaaag
aatgataactcagactcaaaatactaggcaaaaataaagaacattttatt
ccacagaagtctagtatgtggcagttctaccattaaccaagatggagatg
cccaggtgaactgttaggcctaactgttagacaggacattgtccatacta
tgggtaagcaggtctctggggatttaattgccctgctttgccaggacaag
gtaggccagttccaccaagtccctacctcacaggaaagtctgtcagatct
tctgggtctggtggccaaaaactgaggcttccctgagatctctaccctca
aataccacagagtaatctagagtgactatccaagtagccagtatgtatct
gtaatttttaatagatttggaagctgcttggtcttgtttcctgtttactc
aggtgaaattcatccttcccaggtctctgatgatgctgagaaccaggcta
gtgatagcttaattatgttattagtgtgacaattttgtcggtttagtaac
agcaaccaaggcttcagctgccttcctagtcatctccatgtgtaaaactt
gtgtccaggccttattgtcttagagctgctgatcggtctagatataattt
accttgttatcagactcagaaaagacatctagtcacaaaaccaattccat
aacttttttattattctttatttaaaagaacttccttaaaatgagtttcg
atatcactactatgtcttatcgtgatgttgagaaaggtgttaagttatgt
tatgtctagatgggatatacaaaaaacctagcttgagattctagcaaaca
gttagggtctaagaaatgtattttaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88846485_88847401
seq2: B6Ng01-343H17.b_45_961 (reverse)

seq1  TCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCCCTCTCTGTTTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCCCTCTCTGTTTCTTTT  50

seq1  GTATTTTGTTTTTCAAGTCAAGATTTTTCTGTATAGCCCTGGCTCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTTTTTCAAGTCAAGATTTTTCTGTATAGCCCTGGCTCTTCTG  100

seq1  GAACTTGCTCTATAGACTAGGCTAGAATTAAACTCAAAGATCTCTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCTCTATAGACTAGGCTAGAATTAAACTCAAAGATCTCTCTGCC  150

seq1  TCTGCCTCTTGACTGCTGGTATAAAAGCTGTGCACTGCCACAGCCAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTTGACTGCTGGTATAAAAGCTGTGCACTGCCACAGCCAACTG  200

seq1  GCCTGTTTTTCTTTACACTAAACAAATACATATAAATTTATTTTGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTTTCTTTACACTAAACAAATACATATAAATTTATTTTGTTCAG  250

seq1  ATACTACAATTAAATGAAAGTATAAGAGTATCCTAACTGTTGTATCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACAATTAAATGAAAGTATAAGAGTATCCTAACTGTTGTATCAAAT  300

seq1  TCTAAAATTCAGTTGAGCAATTAATACCATCTCACAAAATGCTGTCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTCAGTTGAGCAATTAATACCATCTCACAAAATGCTGTCATAT  350

seq1  TTTTGTAGCCAAAATGTAAAATTAATATTGTTTCACCAGGTTTAAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGCCAAAATGTAAAATTAATATTGTTTCACCAGGTTTAAAGTCA  400

seq1  TTTTAATCAAATAAAAATTAGTAATTTTTTTCTGAAATGACATGCACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCAAATAAAAATTAGTAATTTTTTTCTGAAATGACATGCACTGT  450

seq1  AAATTATGTGTTTATAACAACATACTGTAGATATATCAATTCCATTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGTGTTTATAACAACATACTGTAGATATATCAATTCCATTGTAA  500

seq1  TTATTTACAATAATGTACTCCTCATATTATTAATTCTTTGAAAAAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACAATAATGTACTCCTCATATTATTAATTCTTTGAAAAAATTCT  550

seq1  GGCTTCCAATGACCCTGGAAGAGACATTGTGTTGGACATTCGCTTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCAATGACCCTGGAAGAGACATTGTGTTGGACATTCGCTTTAACT  600

seq1  GTGGGAAGGCCCAGCAAATAACAGAAATCACTTCTGTAATTAGTTTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGGCCCAGCAAATAACAGAAATCACTTCTGTAATTAGTTTATGT  650

seq1  AGCAAAGTGAATGGATTTGGAGATATAATTAAAGCTTTTAGAGAGCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTGAATGGATTTGGAGATATAATTAAAGCTTTTAGAGAGCAGAC  700

seq1  TTTAATCAAAAGGAAGATCTTGTTAGATGTCCTCCCCTAATCTGATAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAAAAGGAAGATCTTGTTAGATGTCCTCCCCTAATCTGATAAGC  750

seq1  TCTCTTAAAAGAGCAAGAAGTCAAACTGAGAAGTGAATTGAAATGCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAAAGAGCAAGAAGTCAAACTGAGAAGTGAATTGAAATGCTTGA  800

seq1  GTCACTTTCTCTGTGGTTGAAGAGAAGTAAACCGCCTAACTGTGCAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTCTCTGTGGTTGAAGAGAAGTAAACCGCCTAACTGTGCAGACA  850

seq1  GAAAACTGCAACCCCAGGCAAGCAGGAGCAGAAGAACTTAGTCCTACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGCAACCCCAGGCAAGCAGGAGCAGAAGAACTTAGTCCTACAAT  900

seq1  TTCAGGGCAATGAATTC  917
      |||||||||||||||||
seq2  TTCAGGGCAATGAATTC  917


seq1: chr13_88718721_88719605
seq2: B6Ng01-343H17.g_372_1242

seq1  GGACAAAAAACTGGTCTACACCTCAACTGCTGATTCATCAAAGAATGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAAAACTGGTCTACACCTCAACTGCTGATTCATCAAAGAATGATA  50

seq1  ACTCAGACTCAAAATACTAGGCAAAAATAAAGAACATTTTATTCCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACTCAAAATACTAGGCAAAAATAAAGAACATTTTATTCCACAGA  100

seq1  AGTCTAGTATGTGGCAGTTCTACCATTAACCAAGATGGAGATGCCCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTATGTGGCAGTTCTACCATTAACCAAGATGGAGATGCCCAGGT  150

seq1  GAACTGTTAGGCCTAACTGTTAGACAGGACATTGTCCATACTATGGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTAGGCCTAACTGTTAGACAGGACATTGTCCATACTATGGGTAA  200

seq1  GCAGGTCTCTGGGGATTTAATTGCCCTGCTTTGCCAGGACAAGGTAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCTCTGGGGATTTAATTGCCCTGCTTTGCCAGGACAAGGTAGGCC  250

seq1  AGTTCCACCAAGTCCCTACCTCACAGGAAAGTCTGTCAGATCTTCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACCAAGTCCCTACCTCACAGGAAAGTCTGTCAGATCTTCTGGGT  300

seq1  CTGGTGGCCAAAAACTGAGGCTTCCCTGAGATCTCTACCCTCAAATACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCCAAAAACTGAGGCTTCCCTGAGATCTCTACCCTCAAATACCA  350

seq1  CAGAGTAATCTAGAGTGACTATCCAAGTAGCCAGTATGTATCTGTAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAATCTAGAGTGACTATCCAAGTAGCCAGTATGTATCTGTAATTT  400

seq1  TTAATAGATTTGGAAGCTGCTTGGTCTTGTTTCCTGTTTACTCAGGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGATTTGGAAGCTGCTTGGTCTTGTTTCCTGTTTACTCAGGTGAA  450

seq1  ATTCATCCTTCCCAGGTCTCTGATGATGCTGAGAACCAGGCTAGTGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCTTCCCAGGTCTCTGATGATGCTGAGAACCAGGCTAGTGATAG  500

seq1  CTTAATTATGTTATTAGTGTGACAATTTTGTCGGTTTAGTAACAGCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTATGTTATTAGTGTGACAATTTTGTCGGTTTAGTAACAGCAACC  550

seq1  AAGGCTTCAGCTGCCTTCCTAGTCATCTCCATGTGTAAAACTTGTGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCAGCTGCCTTCCTAGTCATCTCCATGTGTAAAACTTGTGTCCA  600

seq1  GGCCTTATTGTCTTAGAGCTGCTGATCGGTCTAGATATAATTTACCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATTGTCTTAGAGCTGCTGATCGGTCTAGATATAATTTACCTTGT  650

seq1  TATCAGACTCAGAAAAGACATCTAGTCACAAAACCAATTCCATAAC-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATCAGACTCAGAAAAGACATCTAGTCACAAAACCAATTCCATAACTTTT  700

seq1  TTATTATTCCTTTATTTAAAAGAACTTCCTTAAAATGAGTTTTCCGATTA  749
      |||||||| |||||||||||||||||||||||||||||||||  ||||  
seq2  TTATTATT-CTTTATTTAAAAGAACTTCCTTAAAATGAGTTT--CGAT--  745

seq1  ATCAACTACCTATGTCTTATCGTGAATGTTGGAAGGAAAAGGTGTAAAGT  799
      ||| |||| ||||||||||||||| ||||||  ||  |||||||| ||| 
seq2  ATC-ACTA-CTATGTCTTATCGTG-ATGTTG--AG--AAAGGTGTTAAG-  787

seq1  TTATGTATGGTCTAGATGGG-GATACAAAAAACTAAGCTTTGAGTATCTA  848
      ||||||   |||||||||||  |||||||||||  ||| |||||  ||| 
seq2  TTATGTTATGTCTAGATGGGATATACAAAAAACCTAGC-TTGAGATTCT-  835

seq1  AGAAAACAATTTAAGGTTCTAAG-AATGTATTTTAAAG  885
      || ||||| ||  ||| |||||| ||||||||||||||
seq2  AGCAAACAGTT--AGGGTCTAAGAAATGTATTTTAAAG  871


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