BAC Information

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BAC

Clone NameB6Ng01-344O02
Chromosome15 (Build37)13 (Build37)
Map Location 13,331,978 - 13,332,48768,286,159 - 68,287,195
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907
Downstream geneLOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344O02.bB6Ng01-344O02.g
ACCGA127251GA127252
length9401,054
definitionB6Ng01-344O02.b B6Ng01-344O02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,331,978 - 13,332,487)(68,286,159 - 68,287,195)
sequence
gaattctttgtttagctctgagccccatcttttaagggggttatttgatt
ttctggagtccatcctcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttgcagaagctttgcagtttca
tgaggtctaatttgtcaatcctcgatcttacagcacaagctattgctctt
ctattcgggaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtttctgattttatgtgaagttccttga
tccacttagatttgaccttagtaaaaggagataggaatggatcgattccc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggtttatttctgggtcttcattctatttcattggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggtactttt
atccttgagaaaagtttttgctatcctaggttttttgttattccagatga
atttgcagattgcactttctaattcattgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgctttttggcaagatagccatta
ttacaatggttggtcctgccaatccatgagcatgggagatctttccatct
tcttgagatcttctttaatttctttcttcagagacttgaagttttaatca
tacagatcttttacttcccttagtttagtcacaccaagat

gaattccaactgtaatttcaagaataatgtcccaccctcctgacctttcg
tgacttctgggattgaactctggtcctcctgttttagccactgtgctatt
tcctcagcctttcccctgctttcacaggactctcattccttccataattt
atagcccctatatccagaaccttttatgttctacttctcaaaggattgaa
ttctgatcttctactgtttggagcctctgagactgtcttggtgacatggg
atgaggggtgtgatgaggacagacttgcttcctgtacagacattcaacta
accccttcactgaagccccactcttccttcctgggcatttctgtgaccct
gtggccacttgctgctttgtcttccactgagtgaattgaatgtatgcagt
tacaggcctctaagctgattatcacctgctccctgtttgttctttcactt
ccaacatatgtgggtgccccctagtcagatactctcttaattttttaaaa
taaaaaaatttatgatgccattatcttacttctcctctttcatttccttc
ctgcaatccaccccatgtccttttaggccagtcatttccctcttccccca
ctttctctctacttggtttccctattttttgacaattacacacacacaca
cacacacacaaatatatatatatatatatatacatatatatatatgtata
tatatacatatatatatacatatatatactcattaaacatattagtacaa
cccaatgagactatttagtgttgcttttatgtgtatgatttcagggctgc
ccacatgacattagataacaatttaggagggtcatctctgggagagacta
attctcttctttctctgactcaagaaaggaattcagattttgtaagaaac
tgaagccagtgccaaataacagaaatcctgacccaagacaacaaggcctg
gaggtcattcactgagacatcaacaccatggactctgaacaggaacacac
acaaaaagtgaagaactggggttaaggttgctttcacaagggaagagtgc
agtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13331978_13332487
seq2: B6Ng01-344O02.b_467_985 (reverse)

seq1  ACCTTGGTGTGACTAAACTAA-GGAAGTGAAAGATCTGTATGATAAGAAC  49
      | ||||||||||||||||||| |||||| ||||||||||||||| | |||
seq2  ATCTTGGTGTGACTAAACTAAGGGAAGTAAAAGATCTGTATGATTAAAAC  50

seq1  TTCAAGTCTCTGAAGAAAGAAATTA---AAGATCTC-AGAAGTTGGAAAG  95
      |||||||||||||||||||||||||   |||||||| ||||| |||||||
seq2  TTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAAGAAGATGGAAAG  100

seq1  ATCTCCCATGCTCATGGATTGGTAGGATCAA-CATTG-AAAAATGGCTAT  143
      |||||||||||||||||||||| |||| ||| ||||| || |||||||||
seq2  ATCTCCCATGCTCATGGATTGGCAGGACCAACCATTGTAATAATGGCTAT  150

seq1  CCTGC--AAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTTCA  191
      | |||  |||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTGCCAAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCA  200

seq1  ACTCAGTTCTTCAACGAATTAGAAAGGGCAATCTGCAAATTCATCTGGAA  241
      ||||| |||||||| ||||||||||| |||||||||||||||||||||||
seq2  ACTCAATTCTTCAATGAATTAGAAAGTGCAATCTGCAAATTCATCTGGAA  250

seq1  TAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCT  291
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  TAACAAAAAACCTAGGATAGCAAAAACTTTTCTCAAGGATAAAAGTACCT  300

seq1  CTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTG  350

seq1  ATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAACGGAA  391
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  ATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAATGAAA  400

seq1  CAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATCT  441
       |||| |||||||||||| || ||||||||||||||||||||||||||||
seq2  TAGAA-TGAAGACCCAGAAATAAACCCACACACCTATGGTCACTTGATCT  449

seq1  TTGACAAGAGAGCAAAAACCCTCCAGTGGAA-AAAGACAGCATTTTCAAC  490
      | |||||| |||| |||||| |||||||||| ||||||||||||||||||
seq2  TCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAAC  499

seq1  AAATGGTGCTGGCACAACTG  510
      ||||||||||||||||||||
seq2  AAATGGTGCTGGCACAACTG  519


seq1: chr13_68286159_68287195
seq2: B6Ng01-344O02.g_67_1120

seq1  GAATTCCAACTGTAATTTCAAGAATAATGTCCCACCCTCCTGACCTTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTGTAATTTCAAGAATAATGTCCCACCCTCCTGACCTTTCG  50

seq1  TGACTTCTGGGATTGAACTCTGGTCCTCCTGTTTTAGCCACTGTGCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTGGGATTGAACTCTGGTCCTCCTGTTTTAGCCACTGTGCTATT  100

seq1  TCCTCAGCCTTTCCCCTGCTTTCACAGGACTCTCATTCCTTCCATAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCCTTTCCCCTGCTTTCACAGGACTCTCATTCCTTCCATAATTT  150

seq1  ATAGCCCCTATATCCAGAACCTTTTATGTTCTACTTCTCAAAGGATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCCTATATCCAGAACCTTTTATGTTCTACTTCTCAAAGGATTGAA  200

seq1  TTCTGATCTTCTACTGTTTGGAGCCTCTGAGACTGTCTTGGTGACATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCTTCTACTGTTTGGAGCCTCTGAGACTGTCTTGGTGACATGGG  250

seq1  ATGAGGGGTGTGATGAGGACAGACTTGCTTCCTGTACAGACATTCAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGGTGTGATGAGGACAGACTTGCTTCCTGTACAGACATTCAACTA  300

seq1  ACCCCTTCACTGAAGCCCCACTCTTCCTTCCTGGGCATTTCTGTGACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTCACTGAAGCCCCACTCTTCCTTCCTGGGCATTTCTGTGACCCT  350

seq1  GTGGCCACTTGCTGCTTTGTCTTCCACTGAGTGAATTGAATGTATGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACTTGCTGCTTTGTCTTCCACTGAGTGAATTGAATGTATGCAGT  400

seq1  TACAGGCCTCTAAGCTGATTATCACCTGCTCCCTGTTTGTTCTTTCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCCTCTAAGCTGATTATCACCTGCTCCCTGTTTGTTCTTTCACTT  450

seq1  CCAACATATGTGGGTGCCCCCTAGTCAGATACTCTCTTAATTTTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATATGTGGGTGCCCCCTAGTCAGATACTCTCTTAATTTTTTAAAA  500

seq1  TAAAAAAATTTATGATGCCATTATCTTACTTCTCCTCTTTCATTTCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATTTATGATGCCATTATCTTACTTCTCCTCTTTCATTTCCTTC  550

seq1  CTGCAATCCACCCCATGTCCTTTTAGGCCAGTCATTTCCCTCTTCCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATCCACCCCATGTCCTTTTAGGCCAGTCATTTCCCTCTTCCCCCA  600

seq1  CTTTCTCTCTACTTGGTTTCCCTATTTTTTGACAATTACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTACTTGGTTTCCCTATTTTTTGACAATTACACACACACACA  650

seq1  CACACACACAAATATATATATATATATATATACATATATATATATGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAAATATATATATATATATATATACATATATATATATGTATA  700

seq1  TATATACATATATATATACATATATATACTCATT-AACATATTAGTACAA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATATACATATATATATACATATATATACTCATTAAACATATTAGTACAA  750

seq1  CCCAATGAGACTATTTAGTGTTGCTTTTATGTGTATGATTTCAGGGCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGAGACTATTTAGTGTTGCTTTTATGTGTATGATTTCAGGGCTGC  800

seq1  CCACATGACATTAGATAACAA-TTAGGAAGGTCATCTCT-GGAGAGACTA  847
      ||||||||||||||||||||| |||||| |||||||||| ||||||||||
seq2  CCACATGACATTAGATAACAATTTAGGAGGGTCATCTCTGGGAGAGACTA  850

seq1  ATTCTC-TCTTTCTCTGACTCAAG-AAGGAA-TCAGA-TTTGTAAG-AAC  892
      |||||| ||||||||||||||||| |||||| ||||| |||||||| |||
seq2  ATTCTCTTCTTTCTCTGACTCAAGAAAGGAATTCAGATTTTGTAAGAAAC  900

seq1  TGAAGCCAGTGCCAAATAACAGAAAT-CTGACCCAAGACAACAA-GCCTG  940
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  TGAAGCCAGTGCCAAATAACAGAAATCCTGACCCAAGACAACAAGGCCTG  950

seq1  GAGGCCA-TCACTGAGACATCAACACCAT-GACTCTG-ACAGGGACACAC  987
      |||| || ||||||||||||||||||||| ||||||| ||||| ||||||
seq2  GAGGTCATTCACTGAGACATCAACACCATGGACTCTGAACAGGAACACAC  1000

seq1  AC-AAAAGTGAAGAACT-GGGTTAAGGTTGCTTTCACA--GGAAGAGTGC  1033
      || |||||||||||||| ||||||||||||||||||||  ||||||||||
seq2  ACAAAAAGTGAAGAACTGGGGTTAAGGTTGCTTTCACAAGGGAAGAGTGC  1050

seq1  AGTG  1037
      ||||
seq2  AGTG  1054


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