BAC Information

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BAC

Clone NameB6Ng01-345D06
Chromosome13 (Build37)
Map Location 29,537,541 - 29,691,310
singlet/doubletdoublet
Overlap geneCdkal1
Upstream genePpia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345D06.bB6Ng01-345D06.g
ACCGA127472GA127473
length1,1221,147
definitionB6Ng01-345D06.b B6Ng01-345D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,537,541 - 29,538,670)(29,690,168 - 29,691,310)
sequence
gaattcattatatttatctcttgttcatcacagaatcaacctctgttata
tcttgcaattctgtcatgcaagtgacccataatgtctgtgatagccaact
aacaaacaacaggggtgcttccatttgaatgaacccttcctgattgtcct
tgaggcctatagagatgtttgctacctactccagagtcttcatgttatat
gtctaccacacacctcctgactgccaggatctggtcatggttatggtcgt
gtatgaaagtcattgatacactctcatagttgtgaaacggaacagctctg
taggaaaactatattgagaggaagaattccacaggcatcatttccagtca
gctggccttgtctgccacattctaacgcccgctgataggcatcttttcct
gctgaagttcccacttcttctgccctctctcaagcaatgcttccaatata
accccctctttctttttgcccgcacggcagaggtgtgtctttaaggaaat
agaaaacagttcccttagttaatgaaacgtttctccaatgagcctcagag
tctattttcaacagtcacttgtccaccaaagtttgcattagcgtatgatt
ttctctttccttcctttacacccacttagttggtggaatggctcttggcc
acacttcagtcgaaagaaaaaaagggagagagaaacaccaacacgtcctt
taatgggagacttgatgtaacacactggggcattttccccctgaaaggag
atgatgctagtgaagataagctgggaaactcaccaacaatcaacacagga
agtgcctgaaggctgagcagcctcacaagtgccctcttaccagcaggagc
tggcagggggtaagaatggcaagcattgttttggatggccttttatgtga
gtttggacagcccaaatccacgtgcaccttttaacttgactttttatttc
ttcttatttcattgtggggggacactaggacttatgcaagttaaatgcac
gttcttcactgagttgcatcaccctgccctgactgcacatacttctgtca
taactagcagtgattgaagagaaggagataaagttatgattcacagtgtg
tgtggatctccctcaatggggg

gaattctcttaggaatcaacatgagaagttgatcagggctccagaacaag
caactatgaatatgaggcaatagcatgtcgtcctaaatatgctgagggtt
tcttgagatgggctttctttatggaccccaactgatcttgagctcagtgt
ggagctcaggtaggccccaaactctctgcagtcctcctgcctttgcctag
ttctggggttacacatgagcactgctctttcagttttcatgatgcttaga
catgagtcaaattccacaatgtcaccatacatattttataaataagaatg
tgtttatgtgatcttttaattatttgtatatttctctataaattatgtct
tatttataattcattttctgaatttgtgtatagtttgagttttaaagcat
atttggaaatggattatctaaaattcaaataatcagtttctgtattttaa
agggaagaaagaagctttatacaatagttcagtaagggaggaaaaatatt
tctcatcactgtttccatgaacatttgcatattcactagatacaagaaaa
atggcaggaaactttggggcaggttgtgggacttcctagcaggggactga
ggatgagaccaatcactggtgtggaatcttctcttccacaactctctttg
cctttaactcattgtgacccagagtttacttaaggatgaaggtgtagaaa
agaaggacaaacagttgcatatctaatgtgtttcccttttgccaggacta
agcacatgagtgattcagagagtaatcaacaccgcctacatcttcattct
tgaatatccaagtcaccatgtgtcccttgtgtcataaagaaatatgttgg
gaccattctcaggctcctgtgccaaaggctctggtgtgcatctttcatgt
tcttagatgatactgaccaaagggcccagtatggcatttcatgatgtagc
atagattatgggtatcaagaagcatatattttcttgtgcttgatattatc
aatgcatagatttttctgtttgtataactgaatctgtgcatgtcataact
tactttccagcctcacctggtgacctgacctctttatatttcctagctga
tcccttataatgggaatgctatggattggcttacgtggtctagaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29537541_29538670
seq2: B6Ng01-345D06.b_46_1167

seq1  GAATTCATTATATTTATCTCTTGTTCATCACAGAATCAACCTCTGTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATATTTATCTCTTGTTCATCACAGAATCAACCTCTGTTATA  50

seq1  TCTTGCAATTCTGTCATGCAAGTGACCCATAATGTCTGTGATAGCCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAATTCTGTCATGCAAGTGACCCATAATGTCTGTGATAGCCAACT  100

seq1  AACAAACAACAGGGGTGCTTCCATTTGAATGAACCCTTCCTGATTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAACAGGGGTGCTTCCATTTGAATGAACCCTTCCTGATTGTCCT  150

seq1  TGAGGCCTATAGAGATGTTTGCTACCTACTCCAGAGTCTTCATGTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTATAGAGATGTTTGCTACCTACTCCAGAGTCTTCATGTTATAT  200

seq1  GTCTACCACACACCTCCTGACTGCCAGGATCTGGTCATGGTTATGGTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCACACACCTCCTGACTGCCAGGATCTGGTCATGGTTATGGTCGT  250

seq1  GTATGAAAGTCATTGATACACTCTCATAGTTGTGAAACGGAACAGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAGTCATTGATACACTCTCATAGTTGTGAAACGGAACAGCTCTG  300

seq1  TAGGAAAACTATATTGAGAGGAAGAATTCCACAGGCATCATTTCCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAACTATATTGAGAGGAAGAATTCCACAGGCATCATTTCCAGTCA  350

seq1  GCTGGCCTTGTCTGCCACATTCTAACGCCCGCTGATAGGCATCTTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTGTCTGCCACATTCTAACGCCCGCTGATAGGCATCTTTTCCT  400

seq1  GCTGAAGTTCCCACTTCTTCTGCCCTCTCTCAAGCAATGCTTCCAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTTCCCACTTCTTCTGCCCTCTCTCAAGCAATGCTTCCAATATA  450

seq1  ACCCCCTCTTTCTTTTTGCCCGCACGGCAGAGGTGTGTCTTTAAGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTCTTTCTTTTTGCCCGCACGGCAGAGGTGTGTCTTTAAGGAAAT  500

seq1  AGAAAACAGTTCCCTTAGTTAATGAAACGTTTCTCCAATGAGCCTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGTTCCCTTAGTTAATGAAACGTTTCTCCAATGAGCCTCAGAG  550

seq1  TCTATTTTCAACAGTCACTTGTCCACCAAAGTTTGCATTAGCGTATGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCAACAGTCACTTGTCCACCAAAGTTTGCATTAGCGTATGATT  600

seq1  TTCTCTTTCCTTCCTTTACACCCACTTAGTTGGTGGAATGGCTCTTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCCTTCCTTTACACCCACTTAGTTGGTGGAATGGCTCTTGGCC  650

seq1  ACACTTCAGTCGAAAGAAAAAAAGGGAGAGAGAAACACCAACACGTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAGTCGAAAGAAAAAAAGGGAGAGAGAAACACCAACACGTCCTT  700

seq1  TAATGGGAGACTTGATGTAACACACTGGGGCATTTTCCCCCTGAAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGAGACTTGATGTAACACACTGGGGCATTTTCCCCCTGAAAGGAG  750

seq1  ATGATGCTAGTGAAGATAAGCTGGGAAACTCACCAACAATCAACACAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTAGTGAAGATAAGCTGGGAAACTCACCAACAATCAACACAGGA  800

seq1  AGTGCCTGAAGGCTGAGCAGCCTCACAAGTGCCCTCTTACCAGCAGGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGAAGGCTGAGCAGCCTCACAAGTGCCCTCTTACCAGCAGGAGC  850

seq1  TGGCAGGGGGTAAGAAATGGCAAGCATTGTTTTGGATGGCCTTTTATGTG  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGGGTAAG-AATGGCAAGCATTGTTTTGGATGGCCTTTTATGTG  899

seq1  AGTTTGGACAGCCCAAATCCACGTGCACCTTTTAACTTGAC-TTTTATTT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTTTGGACAGCCCAAATCCACGTGCACCTTTTAACTTGACTTTTTATTT  949

seq1  CTTCTTATTTCATTGT-GGGGGACACTAGGACTTATGCAAGTTAAATGCA  998
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTCTTATTTCATTGTGGGGGGACACTAGGACTTATGCAAGTTAAATGCA  999

seq1  CGTTCTTCACTGAGTTGCATCACCCTGCCCCTGGCCTGCACATACCTTCT  1048
      ||||||||||||||||||||||||||||||   | ||||||||| |||||
seq2  CGTTCTTCACTGAGTTGCATCACCCTGCCC--TGACTGCACATA-CTTCT  1046

seq1  GTCATAAACTAAGGCAAGTGATTTGAGGAAGA-AAGGAGATAAAGGTAAT  1097
      ||||| |||||  || |||||||    ||||| |||||||||||| ||  
seq2  GTCAT-AACTA--GC-AGTGATT----GAAGAGAAGGAGATAAAGTTA--  1086

seq1  TAAATCACA--GTGTGTGGAAC-CCCTCAAAGGGGG  1130
      | | |||||  ||||||||| | ||||||| |||||
seq2  TGATTCACAGTGTGTGTGGATCTCCCTCAATGGGGG  1122


seq1: chr13_29690168_29691310
seq2: B6Ng01-345D06.g_64_1210 (reverse)

seq1  AGTTCTAGA-CAAGTATAGCAAAATCAATAGCATTCCCATTTATAAAGGA  49
      ||||||||| || ||| |||  |||| |||||||||||| |||||| |||
seq2  AGTTCTAGACCACGTA-AGC-CAATCCATAGCATTCCCA-TTATAAGGGA  47

seq1  TCAAGCTA-GAAATAT-AAGA-GTCAGGTCA-CAGGTGA-GCTGAAAGTT  94
      || ||||| ||||||| |||| ||||||||| ||||||| |||| ||  |
seq2  TC-AGCTAGGAAATATAAAGAGGTCAGGTCACCAGGTGAGGCTGGAAAGT  96

seq1  AAGTTTAATGACAATGCACAGAATTCAG-TATACAAACAG-AAAATCTAT  142
      |||||  ||||| |||||||| |||||| ||||||||||| |||||||||
seq2  AAGTT--ATGAC-ATGCACAG-ATTCAGTTATACAAACAGAAAAATCTAT  142

seq1  GCATTGAT-ATATCAAGCACAAG-AAATATATGCTTCTTGATA-CCATAA  189
      |||||||| |||||||||||||| ||||||||||||||||||| ||||||
seq2  GCATTGATAATATCAAGCACAAGAAAATATATGCTTCTTGATACCCATAA  192

seq1  TCTATGCTACATCATGAAATGCCATACTGGG-CCTTTGGTCAGTATCATC  238
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTATGCTACATCATGAAATGCCATACTGGGCCCTTTGGTCAGTATCATC  242

seq1  TAAGAACATGAAAGATGCACACCAGAGCCTTTGGCACAGGAGCCTGAGAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATGAAAGATGCACACCAGAGCCTTTGGCACAGGAGCCTGAGAA  292

seq1  TGGTCCCAACATATTTCTTTATGACACAAGGGACACATGGTGACTTGGAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCAACATATTTCTTTATGACACAAGGGACACATGGTGACTTGGAT  342

seq1  ATTCAAGAATGAAGATGTAGGCGGTGTTGATTACTCTCTGAATCACTCAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGAATGAAGATGTAGGCGGTGTTGATTACTCTCTGAATCACTCAT  392

seq1  GTGCTTAGTCCTGGCAAAAGGGAAACACATTAGATATGCAACTGTTTGTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGTCCTGGCAAAAGGGAAACACATTAGATATGCAACTGTTTGTC  442

seq1  CTTCTTTTCTACACCTTCATCCTTAAGTAAACTCTGGGTCACAATGAGTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCTACACCTTCATCCTTAAGTAAACTCTGGGTCACAATGAGTT  492

seq1  AAAGGCAAAGAGAGTTGTGGAAGAGAAGATTCCACACCAGTGATTGGTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAAGAGAGTTGTGGAAGAGAAGATTCCACACCAGTGATTGGTCT  542

seq1  CATCCTCAGTCCCCTGCTAGGAAGTCCCACAACCTGCCCCAAAGTTTCCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAGTCCCCTGCTAGGAAGTCCCACAACCTGCCCCAAAGTTTCCT  592

seq1  GCCATTTTTCTTGTATCTAGTGAATATGCAAATGTTCATGGAAACAGTGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTTCTTGTATCTAGTGAATATGCAAATGTTCATGGAAACAGTGA  642

seq1  TGAGAAATATTTTTCCTCCCTTACTGAACTATTGTATAAAGCTTCTTTCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATATTTTTCCTCCCTTACTGAACTATTGTATAAAGCTTCTTTCT  692

seq1  TCCCTTTAAAATACAGAAACTGATTATTTGAATTTTAGATAATCCATTTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAAAATACAGAAACTGATTATTTGAATTTTAGATAATCCATTTC  742

seq1  CAAATATGCTTTAAAACTCAAACTATACACAAATTCAGAAAATGAATTAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGCTTTAAAACTCAAACTATACACAAATTCAGAAAATGAATTAT  792

seq1  AAATAAGACATAATTTATAGAGAAATATACAAATAATTAAAAGATCACAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGACATAATTTATAGAGAAATATACAAATAATTAAAAGATCACAT  842

seq1  AAACACATTCTTATTTATAAAATATGTATGGTGACATTGTGGAATTTGAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTCTTATTTATAAAATATGTATGGTGACATTGTGGAATTTGAC  892

seq1  TCATGTCTAAGCATCATGAAAACTGAAAGAGCAGTGCTCATGTGTAACCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTAAGCATCATGAAAACTGAAAGAGCAGTGCTCATGTGTAACCC  942

seq1  CAGAACTAGGCAAAGGCAGGAGGACTGCAGAGAGTTTGGGGCCTACCTGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTAGGCAAAGGCAGGAGGACTGCAGAGAGTTTGGGGCCTACCTGA  992

seq1  GCTCCACACTGAGCTCAAGATCAGTTGGGGTCCATAAAGAAAGCCCATCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACACTGAGCTCAAGATCAGTTGGGGTCCATAAAGAAAGCCCATCT  1042

seq1  CAAGAAACCCTCAGCATATTTAGGACGACATGCTATTGCCTCATATTCAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACCCTCAGCATATTTAGGACGACATGCTATTGCCTCATATTCAT  1092

seq1  AGTTGCTTGTTCTGGAGCCCTGATCAACTTCTCATGTTGATTCCTAAGAG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTGTTCTGGAGCCCTGATCAACTTCTCATGTTGATTCCTAAGAG  1142

seq1  AATTC  1143
      |||||
seq2  AATTC  1147


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