BAC Information

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BAC

Clone NameB6Ng01-345J12
Chromosome13 (Build37)
Map Location 113,525,828 - 113,633,385
singlet/doubletdoublet
Overlap genePpap2a
Upstream geneMap3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
Downstream geneLOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345J12.bB6Ng01-345J12.g
ACCGA127740GA127741
length8681,145
definitionB6Ng01-345J12.b B6Ng01-345J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,525,828 - 113,526,694)(113,632,233 - 113,633,385)
sequence
gaattctctgagatgttatttgtctttttataggaaaaaaaaagagaaat
cagaattattttgaagaaaaatatctctgggattttgctagtggactttg
gcgaggaaatcttgcctcctaacactggcgctggcggaagcggctgagtc
ccatcctttgcaggactgaatttcttaagtgactgtggctgtgtcccatg
tcaggctgtcaggggccttcttgaatgtcctgatcttctggaaaggtata
tgtcacgttaacggggacctaaggagcccatccccatcagccagtgtgtg
ctctccctctaagaacatttttcgtggctgtggcacgttagataagcgtt
gcccagtttctggccaaaagccctggaaaagtcataactttccagagcct
tcagcgctaataaagaacactaattttctggcttctttaagtaaaattac
tcttttccccaccgaatatcatttttcttcttgatttcccaactgttctg
aaaaggtaaagtaagactgttttaaaagtttaagatgacacggtgtttat
cacagactctgccttgcggttcccaagcagggatgagctgcgctgttctg
acacctccccacccccactcagtccccatcagtccagtaatattcagtca
tagcaggcctcaggatccgattgttggattaagtagtcgagattccactt
aaatagaaagtattagatgctattctattatctaggattttcttacatac
tcctcccccaaagtaatgtcgggctagaggtgtagctgaggggtacagca
tttgcctcagaagtatgaggtcccagatttaatccccagtattccctggg
cgggggggggggtggggg
gaattccacccatgtcttagaaattccagacagctaatgatacctttgtc
agcatcagggcacatgaaattacaaaagctaaagatgcatcagagagtga
ggtcttaatgtcctgaggaaatcatctttagttatgaagcaatcatctga
atgtcagctcaacaatgaactgagatcccattttatatggtcatcaatta
gggagtgaggggctgtctgaccgtggtcaacttatggatttcagctgaaa
atagccaacaggatttgctggtggattaggtataaatatatgaaagggta
gaaaactacattaacagagaatggaagccctggaaatggaactggggaat
gtggtacatctgcttgagctgcctacagcagacaggcagacgacagtaga
cagcagacagcagagcagacagcagacaggcagacgacagtagacagcag
acagcagacagcagagcagacagcagacagcagacagtagactagatatc
tgctgtggaggggagaagtcaagctaaatagaatctgacacacaagttct
attaaagccgtgagaccacgaagggaatgggacagaggagaaacgagtcc
agtgatcctgaggacagcaaaggaaatcttcacagaagagaacgaaaagg
gggctgtggtgcaaaagcacaggtgagcttgtgtgacttttgtttgtttg
tgtcttgaggttttgttttttcaaagacagtttctctgtgtagccctggc
tgtccgggaacctgctctgttgcccaggcagatctccagcttggtgatcc
atctgcctctgcctcccagctgctgggattaaaagcatgcaccaccacag
ccagaccaaataaattctttttataaagaaagaaaaaagggatgggggca
tgcatagatctgggtaagatggaactaaatcctggaaaaataaagggaaa
aacctcagggagtgttatttcaaaattctagaacagcacttagaaagatg
tagagtatccaatcatacgaatttattctattgtcttatatacctgtaat
gagttatgagaaatcagcctttttactacataatatccaaaaaaaaaatc
tgcatgactactgagcattccaactcccaactctactattaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113525828_113526694
seq2: B6Ng01-345J12.b_49_916

seq1  GAATTCTCTGAGATGTTATTTGTCTTTTTATAGGAAAAAAAAAGAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGATGTTATTTGTCTTTTTATAGGAAAAAAAAAGAGAAAT  50

seq1  CAGAATTATTTTGAAGAAAAATATCTCTGGGATTTTGCTAGTGGACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTATTTTGAAGAAAAATATCTCTGGGATTTTGCTAGTGGACTTTG  100

seq1  GCGAGGAAATCTTGCCTCCTAACACTGGCGCTGGCGGAAGCGGCTGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGAAATCTTGCCTCCTAACACTGGCGCTGGCGGAAGCGGCTGAGTC  150

seq1  CCATCCTTTGCAGGACTGAATTTCTTAAGTGACTGTGGCTGTGTCCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTTGCAGGACTGAATTTCTTAAGTGACTGTGGCTGTGTCCCATG  200

seq1  TCAGGCTGTCAGGGGCCTTCTTGAATGTCCTGATCTTCTGGAAAGGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGTCAGGGGCCTTCTTGAATGTCCTGATCTTCTGGAAAGGTATA  250

seq1  TGTCACGTTAACGGGGACCTAAGGAGCCCATCCCCATCAGCCAGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGTTAACGGGGACCTAAGGAGCCCATCCCCATCAGCCAGTGTGTG  300

seq1  CTCTCCCTCTAAGAACATTTTTCGTGGCTGTGGCACGTTAGATAAGCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCTAAGAACATTTTTCGTGGCTGTGGCACGTTAGATAAGCGTT  350

seq1  GCCCAGTTTCTGGCCAAAAGCCCTGGAAAAGTCATAACTTTCCAGAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTTCTGGCCAAAAGCCCTGGAAAAGTCATAACTTTCCAGAGCCT  400

seq1  TCAGCGCTAATAAAGAACACTAATTTTCTGGCTTCTTTAAGTAAAATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCTAATAAAGAACACTAATTTTCTGGCTTCTTTAAGTAAAATTAC  450

seq1  TCTTTTCCCCACCGAATATCATTTTTCTTCTTGATTTCCCAACTGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCCCACCGAATATCATTTTTCTTCTTGATTTCCCAACTGTTCTG  500

seq1  AAAAGGTAAAGTAAGACTGTTTTAAAAGTTTAAGATGACACGGTGTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAAAGTAAGACTGTTTTAAAAGTTTAAGATGACACGGTGTTTAT  550

seq1  CACAGACTCTGCCTTGCGGTTCCCAAGCAGGGATGAGCTGCGCTGTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTCTGCCTTGCGGTTCCCAAGCAGGGATGAGCTGCGCTGTTCTG  600

seq1  ACACCTCCCCACCCCCACTCAGTCCCCATCAGTCCAGTAATATTCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCCCACCCCCACTCAGTCCCCATCAGTCCAGTAATATTCAGTCA  650

seq1  TAGCAGGCCTCAGGATCCGATTGTTGGATTAAGTAGTCGAGATTCCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCCTCAGGATCCGATTGTTGGATTAAGTAGTCGAGATTCCACTT  700

seq1  AAATAGAAAGTATTAGATGCTATTCTATTATCTAGGATTTTCTTACATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAGTATTAGATGCTATTCTATTATCTAGGATTTTCTTACATAC  750

seq1  TCCTCCCCCAAAGTAATGTCGGGCTAGAGGTGTAGCTGAGGGGTACAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCAAAGTAATGTCGGGCTAGAGGTGTAGCTGAGGGGTACAGCA  800

seq1  TTTGCCTCAGAAGTATGAGGTCCCAGATTTAATCCCCAGTATTCCCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCAGAAGTATGAGGTCCCAGATTTAATCCCCAGTATTCCCTGGG  850

seq1  C-GGGGGGGGGGTGGGGG  867
      | ||||||||||||||||
seq2  CGGGGGGGGGGGTGGGGG  868

seq1: chr13_113632233_113633385
seq2: B6Ng01-345J12.g_67_1211 (reverse)

seq1  TTTTTATTAGTAGAGTGTGGGAGTTTTGAAATGCTCAAGTATGTCAATGC  50
      |||||| ||||||||| ||||||  ||| ||||||| |||| ||| ||||
seq2  TTTTTAATAGTAGAGT-TGGGAG--TTGGAATGCTC-AGTA-GTC-ATGC  44

seq1  AGATTTTTTTTTTTTGATATTTATGTAAGTAAAAAGCTTGGTTTCTCATT  100
      ||| |||||||||| |||| |||||| |||||||||  || |||||||| 
seq2  AGA-TTTTTTTTTTGGATA-TTATGT-AGTAAAAAGGCTGATTTCTCATA  91

seq1  ACTCATTACAGGTATAT-AGAC-ATAGAATTAAATTTCGTATTGATTGGA  148
      ||||||||||||||||| |||| |||||||  || |||||| ||||||||
seq2  ACTCATTACAGGTATATAAGACAATAGAAT--AAATTCGTA-TGATTGGA  138

seq1  TACTCTACAATCTTTCTAAAGTTGCTGTTCTAGAATTTTGAAAT-ACACT  197
      |||||||| ||||||||||   |||||||||||||||||||||| |||||
seq2  TACTCTAC-ATCTTTCTAA--GTGCTGTTCTAGAATTTTGAAATAACACT  185

seq1  CCCTG-GGTTTTT-CCTTTATTTTTCCAGG-TTTAGTTCCATCTTA-CCA  243
      ||||| ||||||| |||||||||||||||| ||||||||||||||| |||
seq2  CCCTGAGGTTTTTCCCTTTATTTTTCCAGGATTTAGTTCCATCTTACCCA  235

seq1  GATCTATGCATGCCCCCATCCCTTTTTTCTTTCTTTATAAAAAGAATTTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGCATGCCCCCATCCCTTTTTTCTTTCTTTATAAAAAGAATTTA  285

seq1  TTTGGTCTGGCTGTGGTGGTGCATGCTTTTAATCCCAGCAGCTGGGAGGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTGGCTGTGGTGGTGCATGCTTTTAATCCCAGCAGCTGGGAGGC  335

seq1  AGAGGCAGATGGATCACCAAGCTGGAGATCTGCCTGGGCAACAGAGCAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGATGGATCACCAAGCTGGAGATCTGCCTGGGCAACAGAGCAGG  385

seq1  TTCCCGGACAGCCAGGGCTACACAGAGAAACTGTCTTTGAAAAAACAAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGGACAGCCAGGGCTACACAGAGAAACTGTCTTTGAAAAAACAAAA  435

seq1  CCTCAAGACACAAACAAACAAAAGTCACACAAGCTCACCTGTGCTTTTGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGACACAAACAAACAAAAGTCACACAAGCTCACCTGTGCTTTTGC  485

seq1  ACCACAGCCCCCTTTTCGTTCTCTTCTGTGAAGATTTCCTTTGCTGTCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCCCCCTTTTCGTTCTCTTCTGTGAAGATTTCCTTTGCTGTCCT  535

seq1  CAGGATCACTGGACTCGTTTCTCCTCTGTCCCATTCCCTTCGTGGTCTCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCACTGGACTCGTTTCTCCTCTGTCCCATTCCCTTCGTGGTCTCA  585

seq1  CGGCTTTAATAGAACTTGTGTGTCAGATTCTATTTAGCTTGACTTCTCCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTAATAGAACTTGTGTGTCAGATTCTATTTAGCTTGACTTCTCCC  635

seq1  CTCCACAGCAGATATCTAGTCTACTGTCTGCTGTCTGCTGTCTGCTCTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGCAGATATCTAGTCTACTGTCTGCTGTCTGCTGTCTGCTCTGC  685

seq1  TGTCTGCTGTCTGCTGTCTACTGTCGTCTGCCTGTCTGCTGTCTGCTCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGTCTGCTGTCTACTGTCGTCTGCCTGTCTGCTGTCTGCTCTG  735

seq1  CTGTCTGCTGTCTACTGTCGTCTGCCTGTCTGCTGTAGGCAGCTCAAGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCTGTCTACTGTCGTCTGCCTGTCTGCTGTAGGCAGCTCAAGCA  785

seq1  GATGTACCACATTCCCCAGTTCCATTTCCAGGGCTTCCATTCTCTGTTAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACCACATTCCCCAGTTCCATTTCCAGGGCTTCCATTCTCTGTTAA  835

seq1  TGTAGTTTTCTACCCTTTCATATATTTATACCTAATCCACCAGCAAATCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTCTACCCTTTCATATATTTATACCTAATCCACCAGCAAATCC  885

seq1  TGTTGGCTATTTTCAGCTGAAATCCATAAGTTGACCACGGTCAGACAGCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTATTTTCAGCTGAAATCCATAAGTTGACCACGGTCAGACAGCC  935

seq1  CCTCACTCCCTAATTGATGACCATATAAAATGGGATCTCAGTTCATTGTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCCCTAATTGATGACCATATAAAATGGGATCTCAGTTCATTGTT  985

seq1  GAGCTGACATTCAGATGATTGCTTCATAACTAAAGATGATTTCCTCAGGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGACATTCAGATGATTGCTTCATAACTAAAGATGATTTCCTCAGGA  1035

seq1  CATTAAGACCTCACTCTCTGATGCATCTTTAGCTTTTGTAATTTCATGTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGACCTCACTCTCTGATGCATCTTTAGCTTTTGTAATTTCATGTG  1085

seq1  CCCTGATGCTGACAAAGGTATCATTAGCTGTCTGGAATTTCTAAGACATG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGCTGACAAAGGTATCATTAGCTGTCTGGAATTTCTAAGACATG  1135

seq1  GGTGGAATTC  1153
      ||||||||||
seq2  GGTGGAATTC  1145