BAC Information

Click to search

BAC

Clone NameB6Ng01-347B08
Chromosome13 (Build37)
Map Location 11,483,598 - 11,484,765
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039648
Downstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347B08.bB6Ng01-347B08.g
ACCGA128795GA128796
length1,165761
definitionB6Ng01-347B08.b B6Ng01-347B08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcatatcatccagtagcagtcagcaacacagcacaaggaaga
aacgttatatttttttcccttccctggaaagacttcacatgtactcttca
atatgaatttaaaacaaacagcagttacaatttatttttcaacccacaga
ggagcgcctttgattgtgggtctttatgagcttgttaagttcctttgttt
ggctttaatttgagaatcagcaggatacaatagtcgtgtcagatgcagaa
tcttgtcttgtcactcagctgtcagtaattggaagctattttcacattag
taagaggaaccatagatttctgcctaaataccatattagggttttgctct
gtgtttatgtgacattgtgaagttattggttggcatttgtgctagtctcc
tgattgcagtttcaaattccatagaagaaacttaaggcttccatagaaga
agagatcattttagtgtcttagattatctcctaattgctttaagaaaaat
ctgttaatattaacacccttatgttgagattaagtaagaatacatgttat
ggaacttggaggtcacatcctgttttccatgccaggttctaccatccata
cttcataagccaattaaaagcatccaattaaaaggaaaaagcagagaaaa
gagttttattcaatatggctacattaggaagaaagacaaaaggccaccta
agcggggctggaacagtggctcagtggttctgctcttgctgaagacattt
gctgttgattcttaaggctggaaatcccttaggcccatatatttataaat
tggaagcttagtttggtggggtctcggcctaatggcacccttccctttat
ccattttggatcaggttctcatctacagtgcgcgtaagctatagtgcaat
gtgtttactagcctgacaaactacgcttactcaggcatggctatttgcca
gctaaacaaattcagtgtggaaaatcttatgaagaagtcttcttcttttt
tttgtcttaaaaagatccaaggtttgctttattcaaataatattataatt
gctccttgttaggctagggattaggatcagcctcttctatccattgattc
aaatgacatttaattatcatggccatagatagaagtatggcattctatct
taatcgactgttaat

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaatttatgaaattcctagccaaatggatggacctggagggcatca
tcctgagtgaggtaacacattcacaaaggaactcacacaatatgtactca
ctgataagtggatattagcccaaaacctaggatacccaagatataagata
caatttcctaaacacatgaaactcaagaaaaatgaagactgaagtgtgga
cactatgcccctccttagaagtgggaacaaaacacccatggaaggagtta
cagagacaaagtttggagctgagatgaaaggatggaccatgtagagactg
ccatatccagggatccaccccataatcagcatccaaacgctgacaccatt
gcatacactagcaagattttatcgaaaggacccagatgtagctgtctctt
gtgcgactatgccggggcctagcaaacacagaagtggatgctcacagtca
gctaatggatggatcatagggctcccaatggaggagctagagaaagtacc
caaggagctaaagggatctgcaaccctatacgtggaacaacattatgaac
taaccagtaccctggagctcttgactctagctgcatatgtatcaaaagat
ggcctagtcggccatcactggaaagagaggcccattggacacgcaaactt
tatatggcccagtacaggggaacgccagggccaaaaagggggagtgggtg
ggtaggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_11483598_11484765
seq2: B6Ng01-347B08.b_46_1210 (reverse)

seq1  ATTAACAGTC-ATTAAG-TAGAATGCC-TACTTCTAATCTTATGGCATTG  47
      |||||||||| |||||| ||||||||| ||||||| ||| ||||||  ||
seq2  ATTAACAGTCGATTAAGATAGAATGCCATACTTCT-ATC-TATGGCCATG  48

seq1  AATAATAAATGTCATTAGAATCAATGGATAGAGGAGGCTGATTCCTAACC  97
      |  | ||||||||||| ||||||||||||||| |||||||| |||||| |
seq2  ATAATTAAATGTCATTTGAATCAATGGATAGAAGAGGCTGA-TCCTAATC  97

seq1  ACTAGCCTAACAAGGAGCAATTATAAATATTATTTGAAATAAAGCAAACC  147
       ||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  CCTAGCCTAACAAGGAGCAATTAT-AATATTATTTG-AATAAAGCAAACC  145

seq1  TTGGATCTTTCTAAGACAAAAAAAAGAAGAAGACTTCTTCATAAGATTTT  197
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTTTTTAAGACAAAAAAAAGAAGAAGACTTCTTCATAAGATTTT  195

seq1  CCAACACTGAATTTGTTTAGCTGGCAAATAGCCATGCCTGAGTAAGCGTA  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CC-ACACTGAATTTGTTTAGCTGGCAAATAGCCATGCCTGAGTAAGCGTA  244

seq1  GTTTGTCAGGCTAGTAAACACATTGCACTATAGCTTACGCGCACTGTAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCAGGCTAGTAAACACATTGCACTATAGCTTACGCGCACTGTAGA  294

seq1  TGAGAACCTGATCCAAAATGGATAAAGGGAAGGGTGCCATTAGGCCGAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCTGATCCAAAATGGATAAAGGGAAGGGTGCCATTAGGCCGAGA  344

seq1  CCCCACCAAACTAAGCTTCCAATTTATAAATATATGGGCCTAAGGGATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCAAACTAAGCTTCCAATTTATAAATATATGGGCCTAAGGGATTT  394

seq1  CCAGCCTTAAGAATCAACAGCAAATGTCTTCAGCAAGAGCAGAACCACTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTAAGAATCAACAGCAAATGTCTTCAGCAAGAGCAGAACCACTG  444

seq1  AGCCACTGTTCCAGCCCCGCTTAGGTGGCCTTTTGTCTTTCTTCCTAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGTTCCAGCCCCGCTTAGGTGGCCTTTTGTCTTTCTTCCTAATG  494

seq1  TAGCCATATTGAATAAAACTCTTTTCTCTGCTTTTTCCTTTTAATTGGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATATTGAATAAAACTCTTTTCTCTGCTTTTTCCTTTTAATTGGAT  544

seq1  GCTTTTAATTGGCTTATGAAGTATGGATGGTAGAACCTGGCATGGAAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATTGGCTTATGAAGTATGGATGGTAGAACCTGGCATGGAAAAC  594

seq1  AGGATGTGACCTCCAAGTTCCATAACATGTATTCTTACTTAATCTCAACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGACCTCCAAGTTCCATAACATGTATTCTTACTTAATCTCAACA  644

seq1  TAAGGGTGTTAATATTAACAGATTTTTCTTAAAGCAATTAGGAGATAATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTGTTAATATTAACAGATTTTTCTTAAAGCAATTAGGAGATAATC  694

seq1  TAAGACACTAAAATGATCTCTTCTTCTATGGAAGCCTTAAGTTTCTTCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACTAAAATGATCTCTTCTTCTATGGAAGCCTTAAGTTTCTTCTA  744

seq1  TGGAATTTGAAACTGCAATCAGGAGACTAGCACAAATGCCAACCAATAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTGAAACTGCAATCAGGAGACTAGCACAAATGCCAACCAATAAC  794

seq1  TTCACAATGTCACATAAACACAGAGCAAAACCCTAATATGGTATTTAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATGTCACATAAACACAGAGCAAAACCCTAATATGGTATTTAGGC  844

seq1  AGAAATCTATGGTTCCTCTTACTAATGTGAAAATAGCTTCCAATTACTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTATGGTTCCTCTTACTAATGTGAAAATAGCTTCCAATTACTGA  894

seq1  CAGCTGAGTGACAAGACAAGATTCTGCATCTGACACGACTATTGTATCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGTGACAAGACAAGATTCTGCATCTGACACGACTATTGTATCCT  944

seq1  GCTGATTCTCAAATTAAAGCCAAACAAAGGAACTTAACAAGCTCATAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTCTCAAATTAAAGCCAAACAAAGGAACTTAACAAGCTCATAAAG  994

seq1  ACCCACAATCAAAGGCGCTCCTCTGTGGGTTGAAAAATAAATTGTAACTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAATCAAAGGCGCTCCTCTGTGGGTTGAAAAATAAATTGTAACTG  1044

seq1  CTGTTTGTTTTAAATTCATATTGAAGAGTACATGTGAAGTCTTTCCAGGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTTTTAAATTCATATTGAAGAGTACATGTGAAGTCTTTCCAGGG  1094

seq1  AAGGGAAAAAAATATAACGTTTCTTCCTTGTGCTGTGTTGCTGACTGCTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAAAAATATAACGTTTCTTCCTTGTGCTGTGTTGCTGACTGCTA  1144

seq1  CTGGATGATATGAAAGAATTC  1168
      |||||||||||||||||||||
seq2  CTGGATGATATGAAAGAATTC  1165


| Home | SequenceCutter | Blast | Download |