BAC Information

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BAC

Clone NameB6Ng01-347H04
Chromosome13 (Build37)
Map Location 12,327,887 - 12,517,769
singlet/doubletdoublet
Overlap geneMtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246
Upstream geneLOC100039648, Zp4, Ryr2, LOC100039678
Downstream geneLgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347H04.bB6Ng01-347H04.g
ACCGA129045GA129046
length1,2411,137
definitionB6Ng01-347H04.b B6Ng01-347H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,327,887 - 12,329,111)(12,516,630 - 12,517,769)
sequence
gaattcagcatcactatacccaactatacccatgcagataatgatatgcc
tacttaatgtacagcagcagttacatccgtcagctttctttctcagcaac
agaaggctcatcattgctgactgctgcctgtgccttcagaggcaggagcc
tggagctccgtgaggtctgctaacaaatgccaactgctaacctcttcccc
cttcccccagctcacagacagtctctacaaatctacacacagaacatgtt
gttgctacctaatcaacagctcaacaacttcaaaggaagtcggtaactct
gagaaataactggggaagagtagggtcctgtgcatttgttttagctacag
caggcacacagcagggaaaggacagataaatacaattgctcctctcttca
aaatttcagttacacacagtgtctgtaacattgtcaactttaatgtgttt
gatagccataaaaatctagcttctggggggctggagagatggctcaatgg
ttaagagctctgactgttcttccgaaggtcctaagttcaaatcccagcaa
ccacattgtggctcacaaccatccgtaatgagatctgactccttcttctg
gagtgtctgaagacagctacagtgtacttacatataataaataaatcttt
ttaaaaaaatatctagcttctgtttatcaggaaccatagctactcttact
ctactgtccccaattagtacatagatgagtaagtaaaagcaggagttaaa
cagacaggtatagctatcaacatacaaatacacaagctagaacaatgact
cattttaaagaggaagtgatctaaaaaatgaagagttagtctgggatcca
aagatagatacttcaaccataacataaaagctgcaacctagagacactgc
aggtgtggctgcatctctcccttgtccacggccttctcctccttcatcaa
ctctagtaatcagacctggcccttggggtcatgagggcaggacagctagc
cctgtccctcacctgctgcaccatctcacctgggcagcaccacagaagcc
ctggatgtaaggcctacagggggagccaggccctggagggcatgaagcat
aggagaagctgggcctgtctcttgtttgccaggagacggcattggcctag
ggagagaacgcctgcttccccttccctcattccctgtgccatctacagca
aggcagaagagcgtgtctccggtcgcgcgagaaatgggaaa
gaattcctcctcatcagcagaggctggtctttgctggtaagcagctggaa
gatggccggactttgtctgactacaacattcaaagggagtccacccttca
tctggtgttgagacttcggggtggtgctaagagaaggaagaagaagtctt
ataccactcccaagaagaataagcataagaggaagaaggttaagttggct
gtgctgaaatactataaggtggataaaaatggcaaaattagtcgacttcg
tcgacagtgtcctgatgaatgtggtgctggagttttcatgggaagccact
tggacaggcattgctgtggcaagtgttgtctgacttaactgcttcaacaa
accagaagacaagtagttgtgtatgtgttaataaaaagaaggaactcaca
cttaaaaaagaaaaagaaaaacaaacaaacaacaaaagatgttctgtgtc
tatacattctgaaagctaactcacctccccccacccacccaaaaaaaaag
ccacccccaaaaccaagaaacaatcttgcaaaagcttctgggtgagcact
gtccaactgcacactaagcagtgctctcgtacacttaagctggccagtgt
cacaaagcccatgtgactctcaccaccccacctgactgatgtatgctctg
accttttctccataagcagccaccagcactgttttagtgacatactgttc
aaaaagcaggacgaggagaatccacaggaatttttttgcacttagcgtgg
tgactagctgaacaaggatgggcaggcgcctgtgttctggcacatgtgga
agtgcgtccacaaagacaccgatgattttcaccacaatctgttcaacatt
cctagtgacttctacagagtctccagtatcagactgcaaaagatcagaca
gggatgtgaggaggcacaaataaccttcaaaaccagctttcagagggatt
aggtctcttagtgacaactcagtgagtgtgtatcttatttcagccatact
tctgtataagtcgtgtcctccctttggtcaggtcaaatcctgtttcttat
gactttccggttgttctagacatggagaatgttctactctcgacttcttt
agcattactttatccaattcgcacacaatgtaagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12327887_12329111
seq2: B6Ng01-347H04.b_50_1290

seq1  GAATTCAGCATCACTATACCCAACTATACCCATGCAGATAATGATATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATCACTATACCCAACTATACCCATGCAGATAATGATATGCC  50

seq1  TACTTAATGTACAGCAGCAGTTACATCCGTCAGCTTTCTTTCTCAGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATGTACAGCAGCAGTTACATCCGTCAGCTTTCTTTCTCAGCAAC  100

seq1  AGAAGGCTCATCATTGCTGACTGCTGCCTGTGCCTTCAGAGGCAGGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTCATCATTGCTGACTGCTGCCTGTGCCTTCAGAGGCAGGAGCC  150

seq1  TGGAGCTCCGTGAGGTCTGCTAACAAATGCCAACTGCTAACCTCTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCCGTGAGGTCTGCTAACAAATGCCAACTGCTAACCTCTTCCCC  200

seq1  CTTCCCCCAGCTCACAGACAGTCTCTACAAATCTACACACAGAACATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCAGCTCACAGACAGTCTCTACAAATCTACACACAGAACATGTT  250

seq1  GTTGCTACCTAATCAACAGCTCAACAACTTCAAAGGAAGTCGGTAACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTACCTAATCAACAGCTCAACAACTTCAAAGGAAGTCGGTAACTCT  300

seq1  GAGAAATAACTGGGGAAGAGTAGGGTCCTGTGCATTTGTTTTAGCTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAACTGGGGAAGAGTAGGGTCCTGTGCATTTGTTTTAGCTACAG  350

seq1  CAGGCACACAGCAGGGAAAGGACAGATAAATACAATTGCTCCTCTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACAGCAGGGAAAGGACAGATAAATACAATTGCTCCTCTCTTCA  400

seq1  AAATTTCAGTTACACACAGTGTCTGTAACATTGTCAACTTTAATGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAGTTACACACAGTGTCTGTAACATTGTCAACTTTAATGTGTTT  450

seq1  GATAGCCATAAAAATCTAGCTTCTGGGGGGCTGGAGAGATGGCTCAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCATAAAAATCTAGCTTCTGGGGGGCTGGAGAGATGGCTCAATGG  500

seq1  TTAAGAGCTCTGACTGTTCTTCCGAAGGTCCTAAGTTCAAATCCCAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCTCTGACTGTTCTTCCGAAGGTCCTAAGTTCAAATCCCAGCAA  550

seq1  CCACATTGTGGCTCACAACCATCCGTAATGAGATCTGACTCCTTCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTGTGGCTCACAACCATCCGTAATGAGATCTGACTCCTTCTTCTG  600

seq1  GAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATCTTT  650

seq1  TTAAAAAAATATCTAGCTTCTGTTTATCAGGAACCATAGCTACTCTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATATCTAGCTTCTGTTTATCAGGAACCATAGCTACTCTTACT  700

seq1  CTACTGTCCCCAATTAGTACATAGATGAGTAAGTAAAAGCAGGAGTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTCCCCAATTAGTACATAGATGAGTAAGTAAAAGCAGGAGTTAAA  750

seq1  CAGACAGGTATAGCTATCAACATACAAATACACAAGCTAGAACAATGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGTATAGCTATCAACATACAAATACACAAGCTAGAACAATGACT  800

seq1  CATTTTAAAGAGGAAGTGATCTAAAAAATGAAGAGTTAGTCTGGGATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAGAGGAAGTGATCTAAAAAATGAAGAGTTAGTCTGGGATCCA  850

seq1  AAGATAGATACTTCAACCATAACATAAAAGCTGCAACCTAGAGACACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGATACTTCAACCATAACATAAAAGCTGCAACCTAGAGACACTGC  900

seq1  AGGTGTGGCTGCATCTCTCCCTTGTCCACGGCCTTCTCCTCCTTCATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGCTGCATCTCTCCCTTGTCCACGGCCTTCTCCTCCTTCATCAA  950

seq1  CTCTAGTAATCAGACCTGGCCCTTGGGGTCATGAGGGCAGGACAGCTAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTAATCAGACCTGGCCCTTGGGGTCATGAGGGCAGGACAGCTAGC  1000

seq1  CCTGTCCCTCACCTGCTGCACCATCTCACCTGGGCAGCACCACAG-AGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTGTCCCTCACCTGCTGCACCATCTCACCTGGGCAGCACCACAGAAGCC  1050

seq1  CTGGATGTAAGGGCTACA-GGGGAGCCA-GCCCT-GAGGGCATG-AGCAT  1095
      |||||||||||| ||||| ||||||||| ||||| ||||||||| |||||
seq2  CTGGATGTAAGGCCTACAGGGGGAGCCAGGCCCTGGAGGGCATGAAGCAT  1100

seq1  AGGAG-AGCTGGCCCTGTCTCTTGTTTGCCAGGAGACGGCA-TGGACTAG  1143
      ||||| |||||| |||||||||||||||||||||||||||| ||| ||||
seq2  AGGAGAAGCTGGGCCTGTCTCTTGTTTGCCAGGAGACGGCATTGGCCTAG  1150

seq1  GGAGAGACGCCCTGCT--CCCCTCCCTCA-TCCCT-TGCCATCTACAGC-  1188
      |||||||   ||||||  ||| ||||||| ||||| ||||||||||||| 
seq2  GGAGAGAACGCCTGCTTCCCCTTCCCTCATTCCCTGTGCCATCTACAGCA  1200

seq1  AGGCAGGAGAGC-TGGCCCCGGTCGCGAG---AATGGGAAA  1225
      |||||| ||||| || | ||||||||| |   |||||||||
seq2  AGGCAGAAGAGCGTGTCTCCGGTCGCGCGAGAAATGGGAAA  1241

seq1: chr13_12516630_12517769
seq2: B6Ng01-347H04.g_69_1205 (reverse)

seq1  ACAC-TACATTGTGTGCGAAATGAATAAGTAAATGCTAAAG-AGTCGAGA  48
      |||| ||||||||||||||| || ||||   |||||||||| ||||||||
seq2  ACACTTACATTGTGTGCGAATTGGATAAAGTAATGCTAAAGAAGTCGAGA  50

seq1  GTAAGGAAACATCTACATGGTCTAGAACAACCGGAAAAGTTCATAAGAAA  98
      |||  |||   ||| ||| ||||||||||||||||||   ||||||||||
seq2  GTA--GAACATTCTCCAT-GTCTAGAACAACCGGAAA--GTCATAAGAAA  95

seq1  CAGGATTTGAACTGACAAAAGGGAGGACACGATTTATACAGAAGTATGGC  148
      |||||||||| ||||| ||||||||||||||| |||||||||||||||||
seq2  CAGGATTTGACCTGACCAAAGGGAGGACACGACTTATACAGAAGTATGGC  145

seq1  TGAAATAAGATACACACTCACTGAGTTGTCACTAAGAGACCTAATCCCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAGATACACACTCACTGAGTTGTCACTAAGAGACCTAATCCCTC  195

seq1  TGAAAGCTGGTTTTGAAGGTTATTTGTGCCTCCTCACATCCCTGTCTGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTGGTTTTGAAGGTTATTTGTGCCTCCTCACATCCCTGTCTGAT  245

seq1  CTTTTGCAGTCTGATACTGGAGACTCTGTAGAAGTCACTAGGAATGTTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCAGTCTGATACTGGAGACTCTGTAGAAGTCACTAGGAATGTTGA  295

seq1  ACAGATTGTGGTGAAAATCATCGGTGTCTTTGTGGACGCACTTCCACATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGTGGTGAAAATCATCGGTGTCTTTGTGGACGCACTTCCACATG  345

seq1  TGCCAGAACACAGGCGCCTGCCCATCCTTGTTCAGCTAGTCACCACGCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAACACAGGCGCCTGCCCATCCTTGTTCAGCTAGTCACCACGCTA  395

seq1  AGTGCAAAAAAATTCCTGTGGATTCTCCTCGTCCTGCTTTTTGAACAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAAAAAATTCCTGTGGATTCTCCTCGTCCTGCTTTTTGAACAGTA  445

seq1  TGTCACTAAAACAGTGCTGGTGGCTGCTTATGGAGAAAAGGTCAGAGCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAAAACAGTGCTGGTGGCTGCTTATGGAGAAAAGGTCAGAGCAT  495

seq1  ACATCAGTCAGGTGGGGTGGTGAGAGTCACATGGGCTTTGTGACACTGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTCAGGTGGGGTGGTGAGAGTCACATGGGCTTTGTGACACTGGC  545

seq1  CAGCTTAAGTGTACGAGAGCACTGCTTAGTGTGCAGTTGGACAGTGCTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAAGTGTACGAGAGCACTGCTTAGTGTGCAGTTGGACAGTGCTCA  595

seq1  CCCAGAAGCTTTTGCAAGATTGTTTCTTGGTTTTGGGGGTGGCTTTTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCTTTTGCAAGATTGTTTCTTGGTTTTGGGGGTGGCTTTTTTT  645

seq1  TTGGGTGGGTGGGGGGAGGTGAGTTAGCTTTCAGAATGTATAGACACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGGTGGGGGGAGGTGAGTTAGCTTTCAGAATGTATAGACACAGA  695

seq1  ACATCTTTTGTTGTTTGTTTGTTTTTCTTTTTCTTTTTTAAGTGTGAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTTGTTGTTTGTTTGTTTTTCTTTTTCTTTTTTAAGTGTGAGTT  745

seq1  CCTTCTTTTTATTAACACATACACAACTACTTGTCTTCTGGTTTGTTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTTTATTAACACATACACAACTACTTGTCTTCTGGTTTGTTGAA  795

seq1  GCAGTTAAGTCAGACAACACTTGCCACAGCAATGCCTGTCCAAGTGGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAGTCAGACAACACTTGCCACAGCAATGCCTGTCCAAGTGGCTT  845

seq1  CCCATGAAAACTCCAGCACCACATTCATCAGGACACTGTCGACGAAGTCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAAAACTCCAGCACCACATTCATCAGGACACTGTCGACGAAGTCG  895

seq1  ACTAATTTTGCCATTTTTATCCACCTTATAGTATTTCAGCACAGCCAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTGCCATTTTTATCCACCTTATAGTATTTCAGCACAGCCAACT  945

seq1  TAACCTTCTTCCTCTTATGCTTATTCTTCTTGGGAGTGGTATAAGACTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTCTTCCTCTTATGCTTATTCTTCTTGGGAGTGGTATAAGACTTC  995

seq1  TTCTTCCTTCTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTCTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGT  1045

seq1  GGACTCCCTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCCTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCT  1095

seq1  GCTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAGGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAGGAATTC  1137