BAC Information

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BAC

Clone NameB6Ng01-349B11
Chromosome13 (Build37)
Map Location 12,646,328 - 12,752,931
singlet/doubletdoublet
Overlap geneEro1lb, LOC664862
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd
Downstream geneEG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349B11.bB6Ng01-349B11.g
ACCGA130180GA130181
length1,1551,190
definitionB6Ng01-349B11.b B6Ng01-349B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,646,328 - 12,647,487)(12,751,729 - 12,752,931)
sequence
gaattctttgctgggtgtggtggtctgtctgtaatcctagctatttagag
gctaaggcagacagacatatccctggaaatcagacatttgggaacagtcg
ggacattgttacctgtctccaggagaagataaagttccctctggaaggtt
ctgtctttccaggtttgtgtatgccgattcaggagattttgaggaccaat
cccttactaagtcagtaaaactggatcgtgactccagcttttggcagacg
tgccattgatgatttgtggtgggttcaataagaatggacctatatgctta
tatatttgcatgcttagtccccagggggcagagaaggattagggggtgtg
gctttacaggaggaggtgcctccttgttggaggaggtgtgttgctggggt
tggctttcaggtttcaacagctcataccaggcagtgcaaccaagctccct
atcatgaggataacggagtaagcctgtaagcaagaccccagttaaatgct
ttcctttataaaggttatggtgtctcttcattgctgtagaacactaagac
aggtgtattagctacacaattctagtattttgatttagaaatttctttaa
aagaccattggtctaatgaaaattataaaactttaaaaaataattctata
gtcctaaaaagtacattacttacgctctgaagatgaagtattacaaagca
agtcctgccaaaaggctatttgataaatagcttttccaggaacccggtct
tcaatatacacagtccttcacaacctctgaggagatgtttgcattaatgt
gagcctaaggggtttttttgttttttgggttttttttttgtttttttttt
acatctacacatgactgacttaatgaaagtggacagacatcaccagaaaa
cggacaggcatctaaggaaaagactgacgtgagttggaagcacctggggg
ctgtaatcaagttagccactttcaactgctatttaggagctgagaagtaa
ggacattggctcatggctgctgggtcagagggacctatgggaagtggcat
tgtaccccatgctatgcacaattgctgcttgttgagcctttgatattatg
taaattctccgacaggctaagtgtgtatatttcaagtatttaacagttct
agggg
gaattcaagaaaggccttggatcagaaaggatagaggaacactgcctgct
ggctgctggctcagtctggattgcttccaggctccttcagctagctttct
tatacagcctagagccatctctttcaggactatgccacctatagtgttgt
acaggctcagaggataatgccacaggccattcggatctgagagttccctc
ctcccaggtaattccaggttgtgtcaaattcacagtcgaaacgaactaat
gcaggagtcaaaagggattcttctaacttggaggattctgggacagctcc
ctggaaatacattctggttctctcagccttctcatgacagtgggttgaag
aaacgttagctcttccgggctgtggtggctatgatggctatgaaggctat
ggtgatggtaatggctgaatgacagcattgactctgatgacggtgatgac
tatggtgagtgagggctgtaataactgtgctgctgctgttgatggccgtg
atgacaatcatggctatggtgaccatgtttgctctgatgatagtgatgac
caaaggatgtgcttatgtgatgagtgaaaggatggcaaacggccatggaa
atgtgatctcccacttgtagcatatgcaaaggcaaacactcacaagctag
gaccctcctgaagatttgccctgacaaggacctgatagagaaagggagca
ctggggttagagtgctccaggttagagtgctccaggttagagggctccag
gttagaggactttccttgtagttaacagattttgggttccactcacagca
cggagaataaaattaaaaggaaatggagattatagtatgtgcctcaaagc
gagaggtcaccaacaccatccccagccttaggagctgctgtctaacaagg
accccaacttctgctttgctttcagcttgcctcatcatagctgtatttct
gtttgaagtaatcatacttttccatttgtttcctctactgttttttacag
gaccaattagtgctaggcactgtatactaataaaagtaccacctgtatta
gtcaggttctctagagtccacagaacttttggatagtcctctagataata
agatttattgatgacctaaagtccgcagctcatcccaacattgtcagtcg
ccagctggtgatgaagtccaggatctagcagtaatcagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12646328_12647487
seq2: B6Ng01-349B11.b_48_1202

seq1  GAATTCTTTGCTGGGTGTGGTGGTCTGTCTGTAATCCTAGCTATTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTGGGTGTGGTGGTCTGTCTGTAATCCTAGCTATTTAGAG  50

seq1  GCTAAGGCAGACAGACATATCCCTGGAAATCAGACATTTGGGAACAGTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGCAGACAGACATATCCCTGGAAATCAGACATTTGGGAACAGTCG  100

seq1  GGACATTGTTACCTGTCTCCAGGAGAAGATAAAGTTCCCTCTGGAAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGTTACCTGTCTCCAGGAGAAGATAAAGTTCCCTCTGGAAGGTT  150

seq1  CTGTCTTTCCAGGTTTGTGTATGCCGATTCAGGAGATTTTGAGGACCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCCAGGTTTGTGTATGCCGATTCAGGAGATTTTGAGGACCAAT  200

seq1  CCCTTACTAAGTCAGTAAAACTGGATCGTGACTCCAGCTTTTGGCAGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTAAGTCAGTAAAACTGGATCGTGACTCCAGCTTTTGGCAGACG  250

seq1  TGCCATTGATGATTTGTGGTGGGTTCAATAAGAATGGACCTATATGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGATGATTTGTGGTGGGTTCAATAAGAATGGACCTATATGCTTA  300

seq1  TATATTTGCATGCTTAGTCCCCAGGGGGCAGAGAAGGATTAGGGGGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGCATGCTTAGTCCCCAGGGGGCAGAGAAGGATTAGGGGGTGTG  350

seq1  GCTTTACAGGAGGAGGTGCCTCCTTGTTGGAGGAGGTGTGTTGCTGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACAGGAGGAGGTGCCTCCTTGTTGGAGGAGGTGTGTTGCTGGGGT  400

seq1  TGGCTTTCAGGTTTCAACAGCTCATACCAGGCAGTGCAACCAAGCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCAGGTTTCAACAGCTCATACCAGGCAGTGCAACCAAGCTCCCT  450

seq1  ATCATGAGGATAACGGAGTAAGCCTGTAAGCAAGACCCCAGTTAAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGGATAACGGAGTAAGCCTGTAAGCAAGACCCCAGTTAAATGCT  500

seq1  TTCCTTTATAAAGGTTATGGTGTCTCTTCATTGCTGTAGAACACTAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTATAAAGGTTATGGTGTCTCTTCATTGCTGTAGAACACTAAGAC  550

seq1  AGGTGTATTAGCTACACAATTCTAGTATTTTGATTTAGAAATTTCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATTAGCTACACAATTCTAGTATTTTGATTTAGAAATTTCTTTAA  600

seq1  AAGACCATTGGTCTAATGAAAATTATAAAACTTTAAAAAATAATTCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATTGGTCTAATGAAAATTATAAAACTTTAAAAAATAATTCTATA  650

seq1  GTCCTAAAAAGTACATTACTTACGCTCTGAAGATGAAGTATTACAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAAAAGTACATTACTTACGCTCTGAAGATGAAGTATTACAAAGCA  700

seq1  AGTCCTGCCAAAAGGCTATTTGATAAATAGCTTTTCCAGGAACCCGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCCAAAAGGCTATTTGATAAATAGCTTTTCCAGGAACCCGGTCT  750

seq1  TCAATATACACAGTCCTTCACAACCTCTGAGGAGATGTTTGCATTAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATACACAGTCCTTCACAACCTCTGAGGAGATGTTTGCATTAATGT  800

seq1  GAGCCTAAGGGGTTTTTTTGTTTTTTGGGTTTTTTTTT--GTTTTTTTTT  848
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  GAGCCTAAGGGGTTTTTTTGTTTTTTGGGTTTTTTTTTTGTTTTTTTTTT  850

seq1  ACATCTACACATGACTGACTTAATG-AAGTGGACAGACATCACCAGAAAA  897
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACATCTACACATGACTGACTTAATGAAAGTGGACAGACATCACCAGAAAA  900

seq1  CGGACAGGCATCTAAGGAAAAGACTGACGTGAG-TGGAAGCACCTGGGGG  946
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CGGACAGGCATCTAAGGAAAAGACTGACGTGAGTTGGAAGCACCTGGGGG  950

seq1  CTGTAATCAAGTTAGCCAC-TTCAACTGCTA-TTAGGAGCTGAGAAGTAA  994
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CTGTAATCAAGTTAGCCACTTTCAACTGCTATTTAGGAGCTGAGAAGTAA  1000

seq1  GGACATTGGCTTCATGGGCTGCTGGGGTCAGAGGGACCTATGGGAAGTGG  1044
      |||||||||| |||| ||||||| ||||||||||||||||||||||||||
seq2  GGACATTGGC-TCAT-GGCTGCT-GGGTCAGAGGGACCTATGGGAAGTGG  1047

seq1  CA-TGTACCCCCATGCTAATGGCACAATGGCTGCTGGTTTGGAGCCTTGG  1093
      || |||| ||||||||||   ||||||| |||||| |||  ||||||| |
seq2  CATTGTA-CCCCATGCTA--TGCACAATTGCTGCTTGTT--GAGCCTTTG  1092

seq1  ATATTAATGTAAAATTCCTCGACA-GCTAAGTGTTGTTAATTATTTC-AG  1141
      ||||| |||| ||||||  ||||| |||||||| |||    |||||| ||
seq2  ATATT-ATGT-AAATTCTCCGACAGGCTAAGTG-TGT---ATATTTCAAG  1136

seq1  TATTTTAACAG-TCTAGGGG  1160
      || |||||||| ||||||||
seq2  TA-TTTAACAGTTCTAGGGG  1155

seq1: chr13_12751729_12752931
seq2: B6Ng01-349B11.g_67_1256 (reverse)

seq1  GACTGAATAACTGCTAGATCCCTGGACTTCCATTCACAGCT-GCGACTGA  49
      ||||| || |||||||||| ||||||||| |||   ||||| ||||||| 
seq2  GACTG-ATTACTGCTAGAT-CCTGGACTT-CATCACCAGCTGGCGACTG-  46

seq1  ACAATTGTTGGGAATTGAGCTGCCGACTGTAAGTCATCAATAAATTCCTT  99
      |||| ||||||||  |||||||| |||| || |||||||||||||    |
seq2  ACAA-TGTTGGGA--TGAGCTGCGGACTTTAGGTCATCAATAAAT---CT  90

seq1  TATTATCTAGA-GACTATCCATAAGTTCTGT-GACTCTAGAGAACCCTGA  147
      ||||||||||| ||||||||| ||||||||| |||||||||||| |||||
seq2  TATTATCTAGAGGACTATCCAAAAGTTCTGTGGACTCTAGAGAA-CCTGA  139

seq1  CTAATACAGGTGGTTACTTTTATTAAGTATTACAGTGCCTAGCACTAATT  197
      ||||||||||||| |||||||||| |||| ||||||||||||||||||||
seq2  CTAATACAGGTGG-TACTTTTATT-AGTA-TACAGTGCCTAGCACTAATT  186

seq1  GGTCCTGTAAAAAAACAGTAGAGGAAAACAAATGGAAAAGTATGATTACT  247
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  GGTCCTGT-AAAAAACAGTAGAGG-AAACAAATGGAAAAGTATGATTACT  234

seq1  TCAAACAGAAATACAGCTATGATGAGGCAAGCTGAAAGCAAAGCAGAAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGAAATACAGCTATGATGAGGCAAGCTGAAAGCAAAGCAGAAGT  284

seq1  TGGGGTCCTTGTTAGACAGCAGCTCCTAAGGCTGGGGATGGTGTTGGTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCTTGTTAGACAGCAGCTCCTAAGGCTGGGGATGGTGTTGGTGA  334

seq1  CCTCTCGCTTTGAGGCACATACTATAATCTCCATTTCCTTTTAATTTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCGCTTTGAGGCACATACTATAATCTCCATTTCCTTTTAATTTTAT  384

seq1  TCTCCGTGCTGTGAGTGGAACCCAAAATCTGTTAACTACAAGGAAAGTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGTGCTGTGAGTGGAACCCAAAATCTGTTAACTACAAGGAAAGTCC  434

seq1  TCTAACCTGGAGCCCTCTAACCTGGAGCACTCTAACCTGGAGCACTCTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTGGAGCCCTCTAACCTGGAGCACTCTAACCTGGAGCACTCTAA  484

seq1  CCCCAGTGCTCCCTTTCTCTATCAGGTCCTTGTCAGGGCAAATCTTCAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGCTCCCTTTCTCTATCAGGTCCTTGTCAGGGCAAATCTTCAGG  534

seq1  AGGGTCCTAGCTTGTGAGTGTTTGCCTTTGCATATGCTACAAGTGGGAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTAGCTTGTGAGTGTTTGCCTTTGCATATGCTACAAGTGGGAGA  584

seq1  TCACATTTCCATGGCCGTTTGCCATCCTTTCACTCATCACATAAGCACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTCCATGGCCGTTTGCCATCCTTTCACTCATCACATAAGCACAT  634

seq1  CCTTTGGTCATCACTATCATCAGAGCAAACATGGTCACCATAGCCATGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTCATCACTATCATCAGAGCAAACATGGTCACCATAGCCATGAT  684

seq1  TGTCATCACGGCCATCAACAGCAGCAGCACAGTTATTACAGCCCTCACTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCACGGCCATCAACAGCAGCAGCACAGTTATTACAGCCCTCACTC  734

seq1  ACCATAGTCATCACCGTCATCAGAGTCAATGCTGTCATTCAGCCATTACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGTCATCACCGTCATCAGAGTCAATGCTGTCATTCAGCCATTACC  784

seq1  ATCACCATAGCCTTCATAGCCATCATAGCCACCACAGCCCGGAAGAGCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATAGCCTTCATAGCCATCATAGCCACCACAGCCCGGAAGAGCTA  834

seq1  ACGTTTCTTCAACCCACTGTCATGAGAAGGCTGAGAGAACCAGAATGTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCTTCAACCCACTGTCATGAGAAGGCTGAGAGAACCAGAATGTAT  884

seq1  TTCCAGGGAGCTGTCCCAGAATCCTCCAAGTTAGAAGAATCCCTTTTGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGAGCTGTCCCAGAATCCTCCAAGTTAGAAGAATCCCTTTTGAC  934

seq1  TCCTGCATTAGTTCGTTTCGACTGTGAATTTGACACAACCTGGAATTACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATTAGTTCGTTTCGACTGTGAATTTGACACAACCTGGAATTACC  984

seq1  TGGGAGGAGGGAACTCTCAGATCCGAATGGCCTGTGGCATTATCCTCTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGGGAACTCTCAGATCCGAATGGCCTGTGGCATTATCCTCTGA  1034

seq1  GCCTGTACAACACTATAGGTGGCATAGTCCTGAAAGAGATGGCTCTAGGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTACAACACTATAGGTGGCATAGTCCTGAAAGAGATGGCTCTAGGC  1084

seq1  TGTATAAGAAAGCTAGCTGAAGGAGCCTGGAAGCAATCCAGACTGAGCCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGAAAGCTAGCTGAAGGAGCCTGGAAGCAATCCAGACTGAGCCA  1134

seq1  GCAGCCAGCAGGCAGTGTTCCTCTATCCTTTCTGATCCAAGGCCTTTCTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGCAGGCAGTGTTCCTCTATCCTTTCTGATCCAAGGCCTTTCTT  1184

seq1  GAATTC  1203
      ||||||
seq2  GAATTC  1190