BAC Information

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BAC

Clone NameB6Ng01-349C18
Chromosome13 (Build37)
Map Location 45,644,050 - 45,783,466
singlet/doubletdoublet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349C18.bB6Ng01-349C18.g
ACCGA130239GA130240
length1,1321,144
definitionB6Ng01-349C18.b B6Ng01-349C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,782,344 - 45,783,466)(45,644,050 - 45,645,192)
sequence
ggaagggtatcagtccaagattgtgtagttagagttcccttcccacccct
tctttcttcgagaccacaaatgagctgcctgcgtattgctttgtttcctt
gtcttccgaagacaatgaccactaccatcctacagcatcagatacagcgg
gctctcggcagcccaggagtgagaggacctgccagaactatctgtgtgtg
gaagctgaggacacttggaattttaggtgaatttttggtatgagtcaaat
tgaaaggtatagggaagagatgtgagagctttacctatataaagcacagg
gagattcccagtagctatcagtatgagtggacctgtgaaacggaagcatg
tgacgatacatgtgacatcattaacagatcgaggtagcagtatagaaaaa
aaaaataatgtctaaaatcgatgctctgacattaaagacaggagaaagcc
cgaagacaaagatctgtattctttggtcttactctagcagatattgactg
agtatttgcaaacgctgggcattcacaacagctaaggagttttcaatcac
tagggatggaaataagaaaataagcaactctttataccatgagctacctt
cagcatcctgtggatacaaaccagtgtaacattttctgggatcaagcctt
tatcctcatacctgaggtatgattgggtgtcaaccatatcactagggtgt
agcagtcagcatatacagtgtaacaagtgattccaatgtgttgtgccgta
caaacataactgtactgcgattctgcaggtcactgtgctagctcggctga
ggcgtattatgggaatggttgctggaaagtttcacaggctctagggataa
gggaccttcagtttacccagcttgttttaactctgatgtctcttatcctc
tggtaagctcgtcagagcttctgcttacccactcctcctctccttttccc
tgattcttcccttgagtgtgttcgtacttatttattttctggagatgatg
ttctactctgtagcccaggctgggcccgggaatccatagcattcttctgc
ttcggactactcaggtgctaggtggccaggtggtaagaacaccaatgcct
caggtatgaatagagtttctccatatctgcaa
gaattctctttggaaggcaagcacaaccctggaacaggggagcatgaatc
ttggtcttggactggagcaatgcttcttagagtttcaaggcatgtctcag
agtatcacagtaagctatgtatttttcctaatcagccttttgaattatcc
tagccgtaggataactgttagctataaacagtctgctattagtatctaat
cacgtgggcaggcagaaggcttgcccattgcataccaggaacagcccttc
tagtctggttcaatgaggcttcctggcatgctacttattttccagcatgc
ttaaaatacaatgtgtagaaccccagaccctcgtttcaggagtcacatgc
tactacatagtctaggctgcctgatttgttactatgtaacctaggctgcc
tgatttgttactacgtaacctaggctgcctgatttgttgggatgagtcct
aattggatagctcaaaaatacaagaaagaagaaaatagaagcaaagggtt
cccattcttccttggccaagtgagaactctcaactatttctggcatcttc
tccccggtgtgagctccaatttcaattagaagaacgacatcggcacgtgt
ggattggagcagggcatacctggggatttgctgctgcaggagtaatgatt
ttcctaaaccaccaccaagccacaccttcccaaagctgagcccaacacca
gcctgtgcacagtacttccgagacagttgcagagcaggctttctcatgca
ggaagacctctgtcccacaggtttctaggaagtatgcacgccagggaaac
ctgctcaagcaaccacagcttacttaccagttggagccaaactgaagacg
tcactgataaatgccacattaggcacaaagcttgccaatcatttgagaag
aaaaaccctagaatgttgagcagagaggagatggcaggtagagacagtca
tgcctcatctcacaccggtctcccagggtgcactgaggtgatgtgatagg
tcagtgaagagggactccctctttttcagccaccgcttttctttagggat
ctgacgaacggcgaagaaaacagtttgcaattggcacttgttattttatt
agtaggtacggagtattatacaataaactgtactggtatacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45782344_45783466
seq2: B6Ng01-349C18.b_62_1193 (reverse)

seq1  TTGCAG-TATGGAGAAACTCTA-TCATACCTGA-GCA-TGGTG-TCTTAC  45
      |||||| ||||||||||||||| |||||||||| ||| ||||| ||||||
seq2  TTGCAGATATGGAGAAACTCTATTCATACCTGAGGCATTGGTGTTCTTAC  50

seq1  CACCTGCCACCCTAGCACTTGAGTAGT-CGAGGCAGAAGGATTGCTATGG  94
      |||||| |  |||||||| |||||||| ||| |||||| || ||||||||
seq2  CACCTGGCCACCTAGCACCTGAGTAGTCCGAAGCAGAA-GAATGCTATGG  99

seq1  ATTCC--GGGCCAGCCTGGGCTACAGAGTAAGACATCATCT-CAGAAAAT  141
      |||||  || ||||||||||||||||||||  ||||||||| ||||||||
seq2  ATTCCCGGGCCCAGCCTGGGCTACAGAGTAGAACATCATCTCCAGAAAAT  149

seq1  AAATAAGTACGAACACACTC-AGGGAAGAATCAGGG-AAAGGAGAGGGAG  189
      |||||||||||||||||||| ||||||||||||||| |||||||| ||||
seq2  AAATAAGTACGAACACACTCAAGGGAAGAATCAGGGAAAAGGAGA-GGAG  198

seq1  GAGTGGGTAAGCAGAAGCTCTGACGAGCTTACCAGAGGATAAGAGACATC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTAAGCAGAAGCTCTGACGAGCTTACCAGAGGATAAGAGACATC  248

seq1  AGAGTTAAAACAAGCTGGGTAAACTGAAGGTCCCTTATCCCTAGAGCCTG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAAACAAGCTGGGTAAACTGAAGGTCCCTTATCCCTAGAGCCTG  298

seq1  TGAAACTTTCCAGCAACCATTCCCATAATACGCCTCAGCCGAGCTAGCAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTTCCAGCAACCATTCCCATAATACGCCTCAGCCGAGCTAGCAC  348

seq1  AGTGACCTGCAGAATCGCAGTACAGTTATGTTTGTACGGCACAACACATT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTGCAGAATCGCAGTACAGTTATGTTTGTACGGCACAACACATT  398

seq1  GGAATCACTTGTTACACTGTATATGCTGACTGCTACACCCTAGTGATATG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACTTGTTACACTGTATATGCTGACTGCTACACCCTAGTGATATG  448

seq1  GTTGACACCCAATCATACCTCAGGTATGAGGATAAAGGCTTGATCCCAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACACCCAATCATACCTCAGGTATGAGGATAAAGGCTTGATCCCAGA  498

seq1  AAATGTTACACTGGTTTGTATCCACAGGATGCTGAAGGTAGCTCATGGTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTACACTGGTTTGTATCCACAGGATGCTGAAGGTAGCTCATGGTA  548

seq1  TAAAGAGTTGCTTATTTTCTTATTTCCATCCCTAGTGATTGAAAACTCCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTTGCTTATTTTCTTATTTCCATCCCTAGTGATTGAAAACTCCT  598

seq1  TAGCTGTTGTGAATGCCCAGCGTTTGCAAATACTCAGTCAATATCTGCTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTGTGAATGCCCAGCGTTTGCAAATACTCAGTCAATATCTGCTA  648

seq1  GAGTAAGACCAAAGAATACAGATCTTTGTCTTCGGGCTTTCTCCTGTCTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGACCAAAGAATACAGATCTTTGTCTTCGGGCTTTCTCCTGTCTT  698

seq1  TAATGTCAGAGCATCGATTTTAGACATTATTTTTTTTTTCTATACTGCTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCAGAGCATCGATTTTAGACATTATTTTTTTTTTCTATACTGCTA  748

seq1  CCTCGATCTGTTAATGATGTCACATGTATCGTCACATGCTTCCGTTTCAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGATCTGTTAATGATGTCACATGTATCGTCACATGCTTCCGTTTCAC  798

seq1  AGGTCCACTCATACTGATAGCTACTGGGAATCTCCCTGTGCTTTATATAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCACTCATACTGATAGCTACTGGGAATCTCCCTGTGCTTTATATAG  848

seq1  GTAAAGCTCTCACATCTCTTCCCTATACCTTTCAATTTGACTCATACCAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTCTCACATCTCTTCCCTATACCTTTCAATTTGACTCATACCAA  898

seq1  AAATTCACCTAAAATTCCAAGTGTCCTCAGCTTCCACACACAGATAGTTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACCTAAAATTCCAAGTGTCCTCAGCTTCCACACACAGATAGTTC  948

seq1  TGGCAGGTCCTCTCACTCCTGGGCTGCCGAGAGCCCGCTGTATCTGATGC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTCCTCTCACTCCTGGGCTGCCGAGAGCCCGCTGTATCTGATGC  998

seq1  TGTAGGATGGTAGTGGTCATTGTCTTCGGAAGACAAGGAAACAAAGCAAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGATGGTAGTGGTCATTGTCTTCGGAAGACAAGGAAACAAAGCAAT  1048

seq1  ACGCAGGCAGCTCATTTGTGGTCTCGAAGAAAGAAGGGGTGGGAAGGGAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGGCAGCTCATTTGTGGTCTCGAAGAAAGAAGGGGTGGGAAGGGAA  1098

seq1  CTCTAACTACACAATCTTGGACTGATACCCTTCC  1123
      ||||||||||||||||||||||||||||||||||
seq2  CTCTAACTACACAATCTTGGACTGATACCCTTCC  1132

seq1: chr13_45644050_45645192
seq2: B6Ng01-349C18.g_67_1210

seq1  GAATTCTCTTTGGAAGGCAAGCACAACCCTGGAACAGGGGAGCATGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGGAAGGCAAGCACAACCCTGGAACAGGGGAGCATGAATC  50

seq1  TTGGTCTTGGACTGGAGCAATGCTTCTTAGAGTTTCAAGGCATGTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTGGACTGGAGCAATGCTTCTTAGAGTTTCAAGGCATGTCTCAG  100

seq1  AGTATCACAGTAAGCTATGTATTTTTCCTAATCAGCCTTTTGAATTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACAGTAAGCTATGTATTTTTCCTAATCAGCCTTTTGAATTATCC  150

seq1  TAGCCGTAGGATAACTGTTAGCTATAAACAGTCTGCTATTAGTATCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGTAGGATAACTGTTAGCTATAAACAGTCTGCTATTAGTATCTAAT  200

seq1  CACGTGGGCAGGCAGAAGGCTTGCCCATTGCATACCAGGAACAGCCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGGCAGGCAGAAGGCTTGCCCATTGCATACCAGGAACAGCCCTTC  250

seq1  TAGTCTGGTTCAATGAGGCTTCCTGGCATGCTACTTATTTTCCAGCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGTTCAATGAGGCTTCCTGGCATGCTACTTATTTTCCAGCATGC  300

seq1  TTAAAATACAATGTGTAGAACCCCAGACCCTCGTTTCAGGAGTCACATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACAATGTGTAGAACCCCAGACCCTCGTTTCAGGAGTCACATGC  350

seq1  TACTACATAGTCTAGGCTGCCTGATTTGTTACTATGTAACCTAGGCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATAGTCTAGGCTGCCTGATTTGTTACTATGTAACCTAGGCTGCC  400

seq1  TGATTTGTTACTACGTAACCTAGGCTGCCTGATTTGTTGGGATGAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTTACTACGTAACCTAGGCTGCCTGATTTGTTGGGATGAGTCCT  450

seq1  AATTGGATAGCTCAAAAATACAAGAAAGAAGAAAATAGAAGCAAAGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATAGCTCAAAAATACAAGAAAGAAGAAAATAGAAGCAAAGGGTT  500

seq1  CCCATTCTTCCTTGGCCAAGTGAGAACTCTCAACTATTTCTGGCATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTTCCTTGGCCAAGTGAGAACTCTCAACTATTTCTGGCATCTTC  550

seq1  TCCCCGGTGTGAGCTCCAATTTCAATTAGAAGAACGACATCGGCACGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGGTGTGAGCTCCAATTTCAATTAGAAGAACGACATCGGCACGTGT  600

seq1  GGATTGGAGCAGGGCATACCTGGGGATTTGCTGCTGCAGGAGTAATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGAGCAGGGCATACCTGGGGATTTGCTGCTGCAGGAGTAATGATT  650

seq1  TTCCTAAACCACCACCAAGCCACACCTTCCCAAAGCTGAGCCCAACACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAACCACCACCAAGCCACACCTTCCCAAAGCTGAGCCCAACACCA  700

seq1  GCCTGTGCACAGTACTTCCGAGACAGTTGCAGAGCAGGCTTTCTCATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCACAGTACTTCCGAGACAGTTGCAGAGCAGGCTTTCTCATGCA  750

seq1  GGAAGACCTCTGTCCCACAGGTTTCTAGGAAGTATGCACGCCAGGGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCTCTGTCCCACAGGTTTCTAGGAAGTATGCACGCCAGGGAAAC  800

seq1  CTGCTCAAGCAACCACAGCTTACTTACCAGTTGGAGCCAAACTGAAGACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAAGCAACCACAGCTTACTTACCAGTTGGAGCCAAACTGAAGACG  850

seq1  TCACTGATAAATGCCACATTAGGCACAAAGCTTGCCAATCATTTGAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATAAATGCCACATTAGGCACAAAGCTTGCCAATCATTTGAGAAG  900

seq1  AAAAA-CCTAGAATGTTGAGCAGAGAGGAGATGGCAGGTTAGAGACAGTC  949
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAAACCCTAGAATGTTGAGCAGAGAGGAGATGGCAGG-TAGAGACAGTC  949

seq1  ATGCCTCATCTCACACCGGTCTCCCCAGGGTGCACTGAGGTGATGTGGAT  999
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  ATGCCTCATCTCACACCGGTCT-CCCAGGGTGCACTGAGGTGATGT-GAT  997

seq1  AGGTCAGTGAAGAGGGACTCCCCTCTTTTCAGCCACCGC-TTTCTTTAGG  1048
      ||||||||||||||||||||||   |||||||||||||| ||||||||||
seq2  AGGTCAGTGAAGAGGGACTCCCTCTTTTTCAGCCACCGCTTTTCTTTAGG  1047

seq1  GATCTGACAGACGGCGAAGACACAGGTTTGCAATTGGCAC-TGTTATTTT  1097
      ||||||||  |||||||||| |   ||||||||||||||| |||||||||
seq2  GATCTGACGAACGGCGAAGAAAACAGTTTGCAATTGGCACTTGTTATTTT  1097

seq1  ATTAGTA-GTAC-GAGTATTATACAATAAACTTGTACTGGTATACAGA  1143
      ||||||| |||| |||||||||||||||||| ||||||||||||||||
seq2  ATTAGTAGGTACGGAGTATTATACAATAAAC-TGTACTGGTATACAGA  1144