BAC Information

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BAC

Clone NameB6Ng01-349D11
Chromosome13 (Build37)
Map Location 66,722,401 - 66,723,655
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349D11.bB6Ng01-349D11.g
ACCGA130273GA130274
length1,2631,167
definitionB6Ng01-349D11.b B6Ng01-349D11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcattgtcttttattttgtccccattttcattttagatttcgt
taatttggatattctctattttttaatgtttttgtctatcttgtctaata
aaaggctcaaaggccatctccatgtttcattaattctttgtagtcttctc
tttttattttattgatttcatccccaatttgataatttcctgatgtctac
tcccttttttcattgctccctcacttctttctgttctagactttaacgag
tgctgttaaattgccagtatgagagctctccattttttttcatgcaggca
ttttgttctatgaacgtttatcttagcaccactttcattttctttgtgtt
ccataagattgtgcatgttgctcaattgtcgtccttttcattgaattcta
cagagtctctaatttttcctttatttctgtcttaacatttctttcattca
gtagtgaggtgtgcagcctccctgagtttgtaagctttgtgttctctttg
gttttttgatatctagttgtaatccatggtggcctgataagatacagttg
ttatttcagttttcttgtatgcctagagaattgcaatgtgtctgaatatg
tggtcagtttataaataagtttcatgaggtgctgagcagaaggtatattt
tcttatattttagttgaacattttctaaatatcagctgaattcatattca
tgtcgtcagtcagctggagtatttctctgtttagttttggtctgaagaat
ttgtcaattggtggaagttgggtattaaaatttcctagtataaatgtatg
acagtcattatgtgattttaactgtttcttttacaaaggttggtgatcat
atgtttaaggcatagatgttaaaaattttaatgtcatctatggtgatttt
ttcccattttgaggaatatatagtatctttcttcaattcttttggttact
ttttgggttaaaatctattttgctgtatttgtaaatggctgtacctgctt
gcttctttggtccattttcttggatgtctttttccaccctttaccttgag
taatgcctatccttgatgttgagctatatattttgtattacaatagaagg
atagattatgtgtagcatccattctgttccgcctggtattttattggtgg
actgagtcatggttatcatatccatgaggagtgatgcctaactcctgatg
ttgtcatttcctggctgctgtgtggccatggtaagggatgtgtgcgtgag
tgatgtgtgatgc
gaattccactttggtaaaatacatgccacatgttttccagtattaattgc
ccatcccccaccccaccccttcctcactataaatttctagatattttctt
agaactaactttcaggtaaaggtctgttctcatgaggcttctctcctgtg
tgtagtctctgatgtcagagatgacctaacagtaaagactttgaacattt
acatttgaaagatcaccctcctgtatgtattctttgatgagttctaagat
gatctttcttggtgaagggtttgtcttatttgcttcatttttagatattc
tctagtgtgtgcattctttgatgagtgtaaaaactacatttaagtctaaa
gaattcatcacattcattacatttataaggtttctctcctgtatgaatta
cctgatgaatactaagactgtgtttgtgggtaaagcgtttgtcacattca
ctaaacttttaaggcttctctcctgtatgaattctctgatgatttctaag
actgcatttgttactaaagcatttgtcacattccctacatttattaggtt
tctctcctgtatgaattctctgatgaattataagatcatatttgtgagtg
aagcatttgtcacattcactacattgataagggttttcccctgtatgaat
tctctgatgaacattaagattatatttttgggtaaagcatttgtcacatt
cactacatttgtaaggtttttctcctgtataaactctgatgaatagtttt
gggtaaagctttttgtcacattcactacatttgtaaggcttctttcctgt
atgaattatctgatgacttctaggactgtgtttgtcagtacagcatttgt
cacactcactgcatttataaggtttctctccagtatgaattctctgatga
atactaagactgtatttgtgcaaaagcatttgtcacattcactatatctg
taagtttctctcctgtatggattctctgatgtctaagcttgcatttcttg
gtgaaacatctggcacgttcactacatctgtaggttctttcacttattgg
tttgtttcagcctgagtattgcttagagttaaaaaccttatcaagcacta
taccattgtgctctttctttcctatgtgattcttgaatgtagaacaagtg
ataaggaacacaattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66722401_66723655
seq2: B6Ng01-349D11.g_67_1233

seq1  GAATTCCACTTTGGTAAAATACATGCCACATGTTTTCCAGTATTAATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTGGTAAAATACATGCCACATGTTTTCCAGTATTAATTGC  50

seq1  CCATCCCCCACCCCACCCCTTCCTCACTATAAATTTCTAGATATTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCCACCCCACCCCTTCCTCACTATAAATTTCTAGATATTTTCTT  100

seq1  AGAACTAACTTTCAGGTAAAGGTCTGTTCTCATGAGGTTTCTCTCCTGTG  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAACTAACTTTCAGGTAAAGGTCTGTTCTCATGAGGCTTCTCTCCTGTG  150

seq1  TGTAGTCTCTGATGTCAGAGATGACCTAACAGTAAAGACTTTGAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTCTGATGTCAGAGATGACCTAACAGTAAAGACTTTGAACATTT  200

seq1  ACATTTGAAAGATCACCCTCCTGTATGTATTCTTTGATGAGTTCTAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAAGATCACCCTCCTGTATGTATTCTTTGATGAGTTCTAAGAT  250

seq1  GATCTTTCTTGGTGAAGGGTTTGTCTTATTTGCTTCATTTTTAGATATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCTTGGTGAAGGGTTTGTCTTATTTGCTTCATTTTTAGATATTC  300

seq1  TCTAGTGTGTGCATTCTTTGATGAGTGTAAAAACTACATTTAAGTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGTGTGCATTCTTTGATGAGTGTAAAAACTACATTTAAGTCTAAA  350

seq1  GAATTCATCACATTCATTACATTTATAAGGTTTCTCTCCTGTATGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACATTCATTACATTTATAAGGTTTCTCTCCTGTATGAATTA  400

seq1  CCTGATGAATACTAAGACTGTGTTTGTGGGTAAAGCGTTTGTCACATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAATACTAAGACTGTGTTTGTGGGTAAAGCGTTTGTCACATTCA  450

seq1  CTAAACTTTTAAGGCTTCTCTCCTGTATGAATTCTCTGATGATTTCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTTTAAGGCTTCTCTCCTGTATGAATTCTCTGATGATTTCTAAG  500

seq1  ACTGCATTTGTTACTAAAGCATTTGTCACATTCCCTACATTTATTAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTGTTACTAAAGCATTTGTCACATTCCCTACATTTATTAGGTT  550

seq1  TCTCTCCTGTATGAATTCTCTGATGAATTATAAGATCATATTTGTGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGTATGAATTCTCTGATGAATTATAAGATCATATTTGTGAGTG  600

seq1  AAGCATTTGTCACATTCACTACATTGATAAGGGTTTTCCCCTGTATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGTCACATTCACTACATTGATAAGGGTTTTCCCCTGTATGAAT  650

seq1  TCTCTGATGAACATTAAGATTATATTTTTGGGTAAAGCATTTGTCACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATGAACATTAAGATTATATTTTTGGGTAAAGCATTTGTCACATT  700

seq1  CACTACATTTGTAAGGTTTTTCTCCTGTATAAACTCTGATGAATACTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACTACATTTGTAAGGTTTTTCTCCTGTATAAACTCTGATGAATAGTTTT  750

seq1  GGGTAAAGCTTTTTTTCACATTCACTACATTTGTAAGGTTTCTTTCCTGT  800
      |||||||||||                                       
seq2  GGGTAAAGCTT---------------------------------------  761

seq1  ATGAATTATTTGATGACTACTAACATTACATTTTTGGGTAAAGCATTTGT  850
                                                   |||||
seq2  ---------------------------------------------TTTGT  766

seq1  TACATTCACTACATTTGTAAGGCTTCTTTCCTGTATGAATTATCTGATGA  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCACTACATTTGTAAGGCTTCTTTCCTGTATGAATTATCTGATGA  816

seq1  CTTCTAGGACTGTGTTTGTCAGTACAGCATTTGTCACACTCACTACATTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTCTAGGACTGTGTTTGTCAGTACAGCATTTGTCACACTCACTGCATTT  866

seq1  ATAAGGTTTCTCTCCAGTATGAATTCTCTGATGAATACTAAGACTGTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTTTCTCTCCAGTATGAATTCTCTGATGAATACTAAGACTGTATT  916

seq1  TGTGCAAAAAGCATTTGTCACATTCACTATATATGTAAGGTTTCTCTCCT  1050
      ||||| |||||||||||||||||||||||||| ||||| |||||||||||
seq2  TGTGC-AAAAGCATTTGTCACATTCACTATATCTGTAA-GTTTCTCTCCT  964

seq1  GTATGGATTCTCTGATGTCTAAGCTTGCATTTCTTGGTGAAACATCTGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATTCTCTGATGTCTAAGCTTGCATTTCTTGGTGAAACATCTGGC  1014

seq1  ACGTTCACTACATCTGTAAGGTTTCTTTCCACTATTGGTTTGTTTCAGCC  1150
      ||||||||||||||||||  | |||||||   ||||||||||||||||||
seq2  ACGTTCACTACATCTGTA--GGTTCTTTCACTTATTGGTTTGTTTCAGCC  1062

seq1  TGAGTATTTGCTTAGAGTTAAAAACCTTATCAAGCACTATACCATTGTGT  1200
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGTA-TTGCTTAGAGTTAAAAACCTTATCAAGCACTATACCATTGTGC  1111

seq1  TCTTTCTTTCCTATGTGGATTCCTTGATGTAG-ACCAGTGATA--GAACA  1247
      |||||||||||||||| ||||| |  |||||| || |||||||  |||||
seq2  TCTTTCTTTCCTATGT-GATTCTTGAATGTAGAACAAGTGATAAGGAACA  1160

seq1  CAAATTTA  1255
      | ||||||
seq2  C-AATTTA  1167