BAC Information

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BAC

Clone NameB6Ng01-349M04
Chromosome13 (Build37)
Map Location 86,891,386 - 86,981,383
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349M04.bB6Ng01-349M04.g
ACCGA130654GA130655
length1,2151,177
definitionB6Ng01-349M04.b B6Ng01-349M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,980,149 - 86,981,383)(86,891,386 - 86,892,557)
sequence
gaattcaatgcttctgactagaatggggtgatttttggttttctgaactt
tttcttgatatgtgtacgtcagtgatgacttccctgaacctgatttaaaa
aaaatagaaaaaactcttaacagtgcgtattggtttaaatttgtactttc
tgccacataattagtgtttaaaaatagtgaaattatctttctttttaatc
ttattcgctgcatacttccaagtactcaggcaatgcatagtaagtcattt
taatcatttaagattgtccattcctattattagtatctatttgtcatatg
ggtgaaactcaatgagagcacaattatcacactgatcttatttgaaaagt
gtttgaagttgtgactgaaatagggatttttgtttaatatattttctcca
ttaattataaatttatggaataattttcttgagaatacatcagttttgaa
gaacaggcttttaatattttatgatgattctttttgtaataaaataggta
actaggaagctggagaagtgacttagaaggtaactcctcactcggtacag
acaaggttgaaataaatagacatgctgtagcatagccttctgcagatcac
agcagtgagaatttcaaatgtcttttcatagtctcagggcataatccttg
gtgagctgaatgggagccagtgtgcagagagcaccactaatcaattccat
ataaaatctgtgttcatgagagtttctgaaagacctcatcatcagggcct
tccttacaatgcagccctgcttcagtaattgcaaccttctctgtttgatg
ctgtaactcctgtcagtctccagggtataactgaaatgacaagcttctcc
aatcagctgagcagaatacaaaactgcttttcagggaaatggaaatccag
gaatgaaccagttaaaaggaagcacgttgttttctattgtttagctgtct
tttcagtcatatacagacaacaaactacactgtgatactccgaatttgtg
gcttgtaaataaatcattttttaaactatgtgctttttacacatgaacat
gggaataattgtagctatattatgtatattatattaatatgcagctatgt
ttgaatacagatcccatttattatttacaaaaattctctatattgatttt
ggtccatactattattgtaaattgcttaatcatctcaagtctcttcccag
gaatgacatcaagaa
gaattcttttgggattagtatgattgttgtacactttcacaagattttta
ttgaaactcagtaataatttgatgttcaactcaaacaatagctgttaaag
tgatacagtcgtgtcagtgtgtggagctgaaatttataacagtatagaat
ttcacaagagagaggtgttaatctcaagggtacacaacttttatagaaac
attaaggccaatagctttaaatgactaatagttctctcaataatgtgcag
ggctcttaactgggatatggatcatcaactcagcaaacgaatgatatcaa
gttagtaatacaggctggcattgaagagtcacttgtccttaattggcaat
tgtctatgaattatttaagtatatttgttactagcaaatacgatagtcca
aagggtcacagttttgaaaacttttctttacagaaagacaatgatgagta
cctcagcatgtctgtgtatacctgtaatctccatacacaggagacagaga
aaggagaagactgttacagttatgaagttccaaaccagtcccagctacag
agtgaggacctactcaaaaataaattttaaatagacattactaaagaaaa
agcaagtatattgactaaaaaatataaacataatttattattatttgaaa
tgaaacatctatgtttttaattgcatatcctaaatgaagaacagataaga
gtacttaagttggtaagaaatttatttaagagggaaagagaactatagca
aaaccaaaaagttaataaaaattaaagaataaaaatgtaaaagtagaaca
ctaaaaaaatgctatcatgaatactaatgtttgggagaaagtgaatcaga
atcagaaaatatctgagaaaaatagtttaaatggagaacactttgcagtt
gatctatgacgtgatcatgatacttacaaataagattcactttgtttgga
aagattagaattttgatattttttcagtaaaatactgaatcacagataaa
tcacttacctgaggaaaaaggttttcatgatgaaaatcaattagaagtta
aaacaattttaagtcataatttttctgttaacttattaggtctatccact
aagaataaaggctattggttgaaaaatttgtaacatgaacaatatcagaa
ttgaccctcagagtttataattgcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86980149_86981383
seq2: B6Ng01-349M04.b_51_1265 (reverse)

seq1  TTCTT--TGTCATTCCTGTGAA-AGACTTTAGATTGAATTTAAAAGACAT  47
      |||||  ||||||||||| ||| |||||| ||||   |||   |||  ||
seq2  TTCTTGATGTCATTCCTGGGAAGAGACTTGAGAT--GATT---AAGCAAT  45

seq1  ATAACAAATAATATGTATGAAACCAAATTCCAAATATAGAAGAATTTTTG  97
       ||   ||||||| |||||  |||||| ||  ||||||| ||||||||||
seq2  TTA--CAATAATA-GTATG-GACCAAAATC--AATATAG-AGAATTTTTG  88

seq1  TAAATAATTAAATGGG-TCTGTATCAAAACATAGCTGCATATTTTATATT  146
      ||||||| |||||||| |||||||  |||||||||||||||||    || 
seq2  TAAATAA-TAAATGGGATCTGTATTCAAACATAGCTGCATATT---AATA  134

seq1  TATTTTATTACATTAATATAGCTACAATTATTCCATTGTTCATGTGGTTA  196
      || |    |||| |||||||||||||||||||||  ||||||||||  ||
seq2  TAAT---ATACA-TAATATAGCTACAATTATTCCCATGTTCATGTG--TA  178

seq1  AAAAGCACATAGTTTTAAAAAATGAATTTATTTACAAGCCACAAATTCGG  246
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  AAAAGCACATAG-TTTAAAAAATG-ATTTATTTACAAGCCACAAATTCGG  226

seq1  AGTATCACAGTGTAGTTTGTTGTCTGTATATGACTGAAAAGACAGCTAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACAGTGTAGTTTGTTGTCTGTATATGACTGAAAAGACAGCTAAA  276

seq1  CAATAGAAAACAACGTGCTTCCTTTTAACTGGTTCATTCCTGGATTTCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAAAACAACGTGCTTCCTTTTAACTGGTTCATTCCTGGATTTCCA  326

seq1  TTTCCCTGAAAAGCAGTTTTGTATTCTGCTCAGCTGATTGGAGAAGCTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGAAAAGCAGTTTTGTATTCTGCTCAGCTGATTGGAGAAGCTTG  376

seq1  TCATTTCAGTTATACCCTGGAGACTGACAGGAGTTACAGCATCAAACAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAGTTATACCCTGGAGACTGACAGGAGTTACAGCATCAAACAGA  426

seq1  GAAGGTTGCAATTACTGAAGCAGGGCTGCATTGTAAGGAAGGCCCTGATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTGCAATTACTGAAGCAGGGCTGCATTGTAAGGAAGGCCCTGATG  476

seq1  ATGAGGTCTTTCAGAAACTCTCATGAACACAGATTTTATATGGAATTGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTCTTTCAGAAACTCTCATGAACACAGATTTTATATGGAATTGAT  526

seq1  TAGTGGTGCTCTCTGCACACTGGCTCCCATTCAGCTCACCAAGGATTATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTGCTCTCTGCACACTGGCTCCCATTCAGCTCACCAAGGATTATG  576

seq1  CCCTGAGACTATGAAAAGACATTTGAAATTCTCACTGCTGTGATCTGCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGACTATGAAAAGACATTTGAAATTCTCACTGCTGTGATCTGCAG  626

seq1  AAGGCTATGCTACAGCATGTCTATTTATTTCAACCTTGTCTGTACCGAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATGCTACAGCATGTCTATTTATTTCAACCTTGTCTGTACCGAGT  676

seq1  GAGGAGTTACCTTCTAAGTCACTTCTCCAGCTTCCTAGTTACCTATTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTACCTTCTAAGTCACTTCTCCAGCTTCCTAGTTACCTATTTTA  726

seq1  TTACAAAAAGAATCATCATAAAATATTAAAAGCCTGTTCTTCAAAACTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAAGAATCATCATAAAATATTAAAAGCCTGTTCTTCAAAACTGA  776

seq1  TGTATTCTCAAGAAAATTATTCCATAAATTTATAATTAATGGAGAAAATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTCAAGAAAATTATTCCATAAATTTATAATTAATGGAGAAAATA  826

seq1  TATTAAACAAAAATCCCTATTTCAGTCACAACTTCAAACACTTTTCAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACAAAAATCCCTATTTCAGTCACAACTTCAAACACTTTTCAAAT  876

seq1  AAGATCAGTGTGATAATTGTGCTCTCATTGAGTTTCACCCATATGACAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGTGTGATAATTGTGCTCTCATTGAGTTTCACCCATATGACAAA  926

seq1  TAGATACTAATAATAGGAATGGACAATCTTAAATGATTAAAATGACTTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTAATAATAGGAATGGACAATCTTAAATGATTAAAATGACTTAC  976

seq1  TATGCATTGCCTGAGTACTTGGAAGTATGCAGCGAATAAGATTAAAAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTGCCTGAGTACTTGGAAGTATGCAGCGAATAAGATTAAAAAGA  1026

seq1  AAGATAATTTCACTATTTTTAAACACTAATTATGTGGCAGAAAGTACAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATTTCACTATTTTTAAACACTAATTATGTGGCAGAAAGTACAAA  1076

seq1  TTTAAACCAATACGCACTGTTAAGAGTTTTTTCTATTTTTTTTAAATCAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCAATACGCACTGTTAAGAGTTTTTTCTATTTTTTTTAAATCAG  1126

seq1  GTTCAGGGAAGTCATCACTGACGTACACATATCAAGAAAAAGTTCAGAAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGGAAGTCATCACTGACGTACACATATCAAGAAAAAGTTCAGAAA  1176

seq1  ACCAAAAATCACCCCATTCTAGTCAGAAGCATTGAATTC  1235
      |||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAATCACCCCATTCTAGTCAGAAGCATTGAATTC  1215

seq1: chr13_86891386_86892557
seq2: B6Ng01-349M04.g_67_1243

seq1  GAATTCTTTTGGGATTAGTATGATTGTTGTACACTTTCACAAGATTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGGATTAGTATGATTGTTGTACACTTTCACAAGATTTTTA  50

seq1  TTGAAACTCAGTAATAATTTGATGTTCAACTCAAACAATAGCTGTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCAGTAATAATTTGATGTTCAACTCAAACAATAGCTGTTAAAG  100

seq1  TGATACAGTCGTGTCAGTGTGTGGAGCTGAAATTTATAACAGTATAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGTCGTGTCAGTGTGTGGAGCTGAAATTTATAACAGTATAGAAT  150

seq1  TTCACAAGAGAGAGGTGTTAATCTCAAGGGTACACAACTTTTATAGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGAGAGAGGTGTTAATCTCAAGGGTACACAACTTTTATAGAAAC  200

seq1  ATTAAGGCCAATAGCTTTAAATGACTAATAGTTCTCTCAATAATGTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGCCAATAGCTTTAAATGACTAATAGTTCTCTCAATAATGTGCAG  250

seq1  GGCTCTTAACTGGGATATGGATCATCAACTCAGCAAACGAATGATATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTAACTGGGATATGGATCATCAACTCAGCAAACGAATGATATCAA  300

seq1  GTTAGTAATACAGGCTGGCATTGAAGAGTCACTTGTCCTTAATTGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAATACAGGCTGGCATTGAAGAGTCACTTGTCCTTAATTGGCAAT  350

seq1  TGTCTATGAATTATTTAAGTATATTTGTTACTAGCAAATACGATAGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGAATTATTTAAGTATATTTGTTACTAGCAAATACGATAGTCCA  400

seq1  AAGGGTCACAGTTTTGAAAACTTTTCTTTACAGAAAGACAATGATGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCACAGTTTTGAAAACTTTTCTTTACAGAAAGACAATGATGAGTA  450

seq1  CCTCAGCATGTCTGTGTATACCTGTAATCTCCATACACAGGAGACAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCATGTCTGTGTATACCTGTAATCTCCATACACAGGAGACAGAGA  500

seq1  AAGGAGAAGACTGTTACAGTTATGAAGTTCCAAACCAGTCCCAGCTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGACTGTTACAGTTATGAAGTTCCAAACCAGTCCCAGCTACAG  550

seq1  AGTGAGGACCTACTCAAAAATAAATTTTAAATAGACATTACTAAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGACCTACTCAAAAATAAATTTTAAATAGACATTACTAAAGAAAA  600

seq1  AGCAAGTATATTGACTAAAAAATATAAACATAATTTATTATTATTTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTATATTGACTAAAAAATATAAACATAATTTATTATTATTTGAAA  650

seq1  TGAAACATCTATGTTTTTAATTGCATATCCTAAATGAAGAACAGATAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATCTATGTTTTTAATTGCATATCCTAAATGAAGAACAGATAAGA  700

seq1  GTACTTAAGTTGGTAAGAAATTTATTTAAGAGGGAAAGAGAACTATAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAAGTTGGTAAGAAATTTATTTAAGAGGGAAAGAGAACTATAGCA  750

seq1  AAACC-AAAAGTTAATAAAAATTAAAGAATAAAAATGTAAAAGTAGAACA  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAGTTAATAAAAATTAAAGAATAAAAATGTAAAAGTAGAACA  800

seq1  CTAAAAAAATGCTATCATGAATACTAATGTTT-GGAGAAAGTGAATCAGA  848
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTAAAAAAATGCTATCATGAATACTAATGTTTGGGAGAAAGTGAATCAGA  850

seq1  ATCAGAAAATATCTGAGAAAAATAGTTTAAATGGAGAACACTTTGCAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAATATCTGAGAAAAATAGTTTAAATGGAGAACACTTTGCAGTT  900

seq1  GATCTATGACGTGATCATGATACTTACAAATAAGATTCACTTTGTTTGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGACGTGATCATGATACTTACAAATAAGATTCACTTTGTTTGGA  950

seq1  AAGA-TAGAATTTTGATA--TTTTCAGT-AAATACTGAATCACAGATAAA  994
      |||| |||||||||||||  |||||||| |||||||||||||||||||||
seq2  AAGATTAGAATTTTGATATTTTTTCAGTAAAATACTGAATCACAGATAAA  1000

seq1  TCACTTACCTGAGGAAAAAGGTTTTCATGATGAAAAATTCAAATAGAAGT  1044
      ||||||||||||||||||||||||||||||||||||  |||| |||||||
seq2  TCACTTACCTGAGGAAAAAGGTTTTCATGATGAAAA--TCAATTAGAAGT  1048

seq1  AAAAACAATTTTAAAGTCATA--TTTTCTGTATAACTTATTAGGTCCTAT  1092
       ||||||||||| ||||||||  |||||||| ||||||||||||| ||||
seq2  TAAAACAATTTT-AAGTCATAATTTTTCTGT-TAACTTATTAGGT-CTAT  1095

seq1  CCACTAAGA--TAAGGCTATGTG----AAAATTTGTACAATG-ACAATAT  1135
      |||||||||   ||||||||  |    ||||||||||  ||| |||||| 
seq2  CCACTAAGAATAAAGGCTATTGGTTGAAAAATTTGTAACATGAACAATA-  1144

seq1  TCAGGAATTGACACTCAAGGAAGTTTATAAATGCAAG  1172
      ||| |||||||| ||||    ||||||||| ||||||
seq2  TCA-GAATTGACCCTCA---GAGTTTATAATTGCAAG  1177