BAC Information

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BAC

Clone NameB6Ng01-350K01
Chromosome13 (Build37)
Map Location 26,410,510 - 26,481,657
singlet/doubletdoublet
Overlap genenone
Upstream geneTpi-rs8, LOC214973, LOC666221
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350K01.bB6Ng01-350K01.g
ACCGA131242GA131243
length1,2101,108
definitionB6Ng01-350K01.b B6Ng01-350K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,480,457 - 26,481,657)(26,410,510 - 26,411,629)
sequence
gaattcttctgcctacattacctaaggttctatcctaggcctcatgactt
tctctctttaaatagaggaattctgttcaaggtttctgtttgtagtattt
gtgcatagaaaactccttttgttactaaaataaagtgtgggaaatggttt
tcctccaatttttattaggtatttacttcacttacatttcaaatgctatc
ctgaaagtcccccataccatcccccaccctgctcccctacccacccactc
ccacttcttggccctggtgtttcccctgtactagagcatataaaatttgc
aagaccaagggcctctcttccctatgatggctgactaggtcatcttctga
tacatatgcagctagagacacgagctctgggggtactggttagttcatat
tgttgttccacctatagggttgcagaccccttcagctccttgggtacttt
ctctagctcctccattgggggtcctgtgttccatccaatagatgactgtg
agcatccacttctgtatttgccaggcactggcatagcctcacatgagact
gctatatcagggtcctttcagaaaaatcttgctggcatatgcaatagtgt
ctgcatttgggaaatgggttttttaagagtagtagagctaactactgaat
tgcactatggagttaaaggttccaatttaatgatttgtgtacagggactt
tagtgtgattgttagttaaatatgttcacagaattagataacatgatgtt
ccctgccctcccaacagtcctcctggggaaacaagcagtgcttatttaag
ctcaacagcagctatgagaaaaatagccacaggcagatcctgaggacttt
tggtgggttactgtagaaattaagtaaatattttttgaaaggttcatgac
ctcaggttatgagcatctgaaggaagatgggagccagcaatttggaaact
gattcaagtgggaatacttagaagtgttacaggcttcatataatggagca
ctgatcagggagatgggagcacaggagagcatttctggaaagttttatca
gttatcagtgaagactgctgagtgcctccaccacagttgtaacagaggta
cttccaccaggttaagaggagtgctccacacgagtgccagagtacctcaa
tgcagttcttgagcgctactcatgtgctgagttctcccaatattgtggaa
gagatactcc
gaattcacctgctgacacagtaaaactcctgactggaagctgtaatacct
tagtgtcatgccgtggagggggaaaacctgttcataaattccaccaatgt
gcagtgctttacttggggtcccagttgcagactcattatttatgctgtgt
acagtaggccatcagtgtatgcccctgggaaattagttcacaatttagaa
tggtttcaaagtacaagtgcttcttaagtcattttctgaggttaaatgag
aactcttattgctttctgtgagctcagaggggatggtttatatatcaaga
gttcccccttcccagcatctgctgcactctctttctcctcttccaatgct
ctttcgtgttaaatctctttcactcactcctttttcctccccagtttttg
acagtaataaaggaaatagtattttttgtattttttttttcatttttcta
gtttactgggactagtttagtaacttaattttaaagaaagaataatattt
acttattgtgtattcttgttccatggcactggtgtggaggtcagagggca
gtttacgggagttgattttctctgtctgccatgaagatttcagggagaaa
attcagataattagtcatggggtctaatacccactgagccaactcaacta
gcctagtttctcactttagctttgtattttagaggctccagagatcgtgg
agagtatagcctttccagctggcattgcttagtgagttagaagaatctct
ccattctcattccacaccccccattctagcctattttcttcatggattca
gatatgctgcttaagagcatcccagaaaggtcaatcctacaaaccagtga
ttcatcaccctgtgcattgtcttactggcaagcaaaaagtatatatttaa
cattaggagtgcttgtgggggactccatcttcataagcccttgtgattcc
tctaatagaacatcttaaaattttaagttcttattcattcttctaggaga
tttggtcatcaaatgctattctggctatcatagcatgaatacacctagat
tatgggtatcatcactgtatgccttagaaacagatattcatcatataagc
tcttatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26480457_26481657
seq2: B6Ng01-350K01.b_44_1253 (reverse)

seq1  GGAGTA-CTCTT-CACAATA-TGTGAGAACTCAGCACATGATGTAAGCGC  47
      |||||| ||||| ||||||| || ||||||||||||||||| || |||||
seq2  GGAGTATCTCTTCCACAATATTGGGAGAACTCAGCACATGA-GT-AGCGC  48

seq1  TCAGAACACTGCA-TGA-GTACTCT-GCACTCGGTGT-GAGCACTCCTCT  93
      ||| |  |||||| ||| ||||||| |||||| |||| ||||||||||||
seq2  TCA-AGAACTGCATTGAGGTACTCTGGCACTC-GTGTGGAGCACTCCTCT  96

seq1  TA--CT-GTGTGAGTA-CTCTG-TAC-ACTGT-GTG--AGCACTCAGCAA  134
      ||  || |||  |||| ||||| ||| ||||| |||   |||||||||| 
seq2  TAACCTGGTGGAAGTACCTCTGTTACAACTGTGGTGGAGGCACTCAGCA-  145

seq1  GGTCTTCACTGATTAACTTGATAAAACTTTCCAGAAATGCTCTTCCTGTG  184
       ||||||||||| |||| |||||||||||||||||||||||| |||||||
seq2  -GTCTTCACTGA-TAAC-TGATAAAACTTTCCAGAAATGCTC-TCCTGTG  191

seq1  CTCCCATCTCCCTGATCAGTGCTCCATTATATGAAGCCTGTAACACTTCT  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCTCCCTGATCAGTGCTCCATTATATGAAGCCTGTAACACTTCT  241

seq1  AAGTATTCCCACTTGAATCAGTTTCCAAATTGCTGGCT-CCATCTTCCTT  283
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGTATTCCCACTTGAATCAGTTTCCAAATTGCTGGCTCCCATCTTCCTT  291

seq1  CAGATGCTCATAACCTGAGGTCATGAACCTTTC-AAAAATATTTACTTAA  332
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGATGCTCATAACCTGAGGTCATGAACCTTTCAAAAAATATTTACTTAA  341

seq1  TTTCTACAGTAACCCACCAAAAGTCCTCAGGATCTGCCTGTGGCTATTTT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGTAACCCACCAAAAGTCCTCAGGATCTGCCTGTGGCTATTTT  391

seq1  TCTCATAGCTGCTGTTGAGCTTAAATAAGCACTGCTTGTTTCCCCAGGAG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGCTGCTGTTGAGCTTAAATAAGCACTGCTTGTTTCCCCAGGAG  441

seq1  GACTGTTGGGAGGGCAGGGAACATCATGTTATCTAATTCTGTGAACATAT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTGGGAGGGCAGGGAACATCATGTTATCTAATTCTGTGAACATAT  491

seq1  TTAACTAACAATCACACTAAAGTCCCTGTACACAAATCATTAAATTGGAA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAACAATCACACTAAAGTCCCTGTACACAAATCATTAAATTGGAA  541

seq1  CCTTTAACTCCATAGTGCAATTCAGTAGTTAGCTCTACTACTCTTAAAAA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACTCCATAGTGCAATTCAGTAGTTAGCTCTACTACTCTTAAAAA  591

seq1  ACCCATTTCCCAAATGCAGACACTATTGCATATGCCAGCAAGATTTTTCT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTCCCAAATGCAGACACTATTGCATATGCCAGCAAGATTTTTCT  641

seq1  GAAAGGACCCTGATATAGCAGTCTCATGTGAGGCTATGCCAGTGCCTGGC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACCCTGATATAGCAGTCTCATGTGAGGCTATGCCAGTGCCTGGC  691

seq1  AAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACACAGGACC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACACAGGACC  741

seq1  CCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAA  791

seq1  CCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGT  841

seq1  GTCTCTAGCTGCATATGTATCAGAAGATGACCTAGTCAGCCATCATAGGG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAGCTGCATATGTATCAGAAGATGACCTAGTCAGCCATCATAGGG  891

seq1  AAGAGAGGCCCTTGGTCTTGCAAATTTTATATGCTCTAGTACAGGGGAAA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGCCCTTGGTCTTGCAAATTTTATATGCTCTAGTACAGGGGAAA  941

seq1  CACCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGTGGGGGA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGTGGGGGA  991

seq1  TGGTATGGGGGACTTTCAGGATAGCATTTGAAATGTAAGTGAAGTAAATA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGGGGGACTTTCAGGATAGCATTTGAAATGTAAGTGAAGTAAATA  1041

seq1  CCTAATAAAAATTGGAGGAAAACCATTTCCCACACTTTATTTTAGTAACA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAAAAATTGGAGGAAAACCATTTCCCACACTTTATTTTAGTAACA  1091

seq1  AAAGGAGTTTTCTATGCACAAATACTACAAACAGAAACCTTGAACAGAAT  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTTTTCTATGCACAAATACTACAAACAGAAACCTTGAACAGAAT  1141

seq1  TCCTCTATTTAAAGAGAGAAAGTCATGAGGCCTAGGATAGAACCTTAGGT  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATTTAAAGAGAGAAAGTCATGAGGCCTAGGATAGAACCTTAGGT  1191

seq1  AATGTAGGCAGAAGAATTC  1201
      |||||||||||||||||||
seq2  AATGTAGGCAGAAGAATTC  1210

seq1: chr13_26410510_26411629
seq2: B6Ng01-350K01.g_67_1174

seq1  GAATTCACCTGCTGACACAGTAAAACTCCTGACTGGAAGCTGTAATACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGCTGACACAGTAAAACTCCTGACTGGAAGCTGTAATACCT  50

seq1  TAGTGTCATGCCGTGGAGGGGGAAAACCTGTTCATAAATTCCACCAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCATGCCGTGGAGGGGGAAAACCTGTTCATAAATTCCACCAATGT  100

seq1  GCAGTGCTTTACTTGGGGTCCCAGTTGCAGACTCATTATTTATGCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCTTTACTTGGGGTCCCAGTTGCAGACTCATTATTTATGCTGTGT  150

seq1  ACAGTAGGCCATCAGTGTATGCCCCTGGGAAATTAGTTCACAATTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGCCATCAGTGTATGCCCCTGGGAAATTAGTTCACAATTTAGAA  200

seq1  TGGTTTCAAAGTACAAGTGCTTCTTAAGTCATTTTCTGAGGTTAAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCAAAGTACAAGTGCTTCTTAAGTCATTTTCTGAGGTTAAATGAG  250

seq1  AACTCTTATTGCTTTCTGTGAGCTCAGAGGGGATGGTTTATATATCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTATTGCTTTCTGTGAGCTCAGAGGGGATGGTTTATATATCAAGA  300

seq1  GTTCCCCCTTCCCAGCATCTGCTGCACTCTCTTTCTCCTCTTCCAATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCCTTCCCAGCATCTGCTGCACTCTCTTTCTCCTCTTCCAATGCT  350

seq1  CTTTCGTGTTAAATCTCTTTCACTCACTCCTTTTTCCTCCCCAGTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGTGTTAAATCTCTTTCACTCACTCCTTTTTCCTCCCCAGTTTTTG  400

seq1  ACAGTAATAAAGGAAATAGTATTTTTTGTATTTTTTTTTTCATTTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATAAAGGAAATAGTATTTTTTGTATTTTTTTTTTCATTTTTCTA  450

seq1  GTTTACTGGGACTAGTTTAGTAACTTAATTTTAAAGAAAGAATAATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGGGACTAGTTTAGTAACTTAATTTTAAAGAAAGAATAATATTT  500

seq1  ACTTATTGTGTATTCTTGTTCCATGGCACTGGTGTGGAGGTCAGAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGTGTATTCTTGTTCCATGGCACTGGTGTGGAGGTCAGAGGGCA  550

seq1  GTTTACGGGAGTTGATTTTCTCTGTCTGCCATGAAGATTTCAGGGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACGGGAGTTGATTTTCTCTGTCTGCCATGAAGATTTCAGGGAGAAA  600

seq1  ATTCAGATAATTAGTCATGGGGTCTAATACCCACTGAGCCAACTCAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATAATTAGTCATGGGGTCTAATACCCACTGAGCCAACTCAACTA  650

seq1  GCCTAGTTTCTCACTTTAGCTTTGTATTTTAGAGGCTCCAGAGATCGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTTCTCACTTTAGCTTTGTATTTTAGAGGCTCCAGAGATCGTGG  700

seq1  AGAGTATAGCCTTTCCAGCTGGCATTGCTTAGTGAGTTAGAAGAATCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATAGCCTTTCCAGCTGGCATTGCTTAGTGAGTTAGAAGAATCTCT  750

seq1  CCATTCTCATTCCACACCCCCCATTCTAGCCTATTTTCTTCATGGATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCATTCCACACCCCCCATTCTAGCCTATTTTCTTCATGGATTCA  800

seq1  GATATGCTGCTTAAGAGCATCCCAGAAAGGTCAATCCTACAAACCAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCTGCTTAAGAGCATCCCAGAAAGGTCAATCCTACAAACCAGTGA  850

seq1  TTCATCACCCTGTGCATTGTCTTACTGGCAAGCAAAAAGTATATAATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCATCACCCTGTGCATTGTCTTACTGGCAAGCAAAAAGTATATATTTAA  900

seq1  CATTAGGAGTGCTTTGTGGGGACTCCATCTTCATAAGCCCTTGTGATT-C  949
      ||||||||||||||   ||||||||||||||||||||||||||||||| |
seq2  CATTAGGAGTGCTTGTGGGGGACTCCATCTTCATAAGCCCTTGTGATTCC  950

seq1  TCTAATAGAACATTCTTAAAATTTTAAG-TCTTATTCATTC-TCTAGGAG  997
      |||||||||||| ||||||||||||||| |||||||||||| ||||||||
seq2  TCTAATAGAACA-TCTTAAAATTTTAAGTTCTTATTCATTCTTCTAGGAG  999

seq1  ATTTGGTCATCAAATGCCTATCTGGCTATTCATAGCATG-ATACCAACCT  1046
      |||||||||||||||||   |||||||| |||||||||| ||||  ||| 
seq2  ATTTGGTCATCAAATGCTATTCTGGCTA-TCATAGCATGAATAC--ACC-  1045

seq1  TAGATAATGGGTATCAATTCACCTGTTATTGCTTTTAAGAAACAGAAATA  1096
      ||||| ||||||||||  ||| ||||   ||| ||  |||||||||    
seq2  TAGATTATGGGTATCA--TCA-CTGT--ATGCCTT--AGAAACAGA---T  1085

seq1  ATCCATCATATAAAGCTCTTATGG  1120
      || |||||||| ||||||||||||
seq2  ATTCATCATAT-AAGCTCTTATGG  1108