BAC Information

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BAC

Clone NameMSMg01-045N17
Chromosome13 (Build37)
Map Location 13,453,791 - 13,454,433
singlet/doubletsinglet
Overlap geneGpr137b
Upstream geneEG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108
Downstream geneLOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045N17.T7 (MSMg01no045_n17.b1)MSMg01-045N17.TJ (MSMg01no045_n17.g1)
ACCAG276381AG276382
length702702
length of high quality
(start - end)		655 (43 - 697)629 (74 - 702)
definitionCHROMAT_FILE: MSMg01no045_n17.b1 PHD_FILE: MSMg01no045_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:55 2005CHROMAT_FILE: MSMg01no045_n17.g1 PHD_FILE: MSMg01no045_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTATCTCTGAACCCCATTTTTAATGGGGTTATTTGAATTTCTG
GAGTTCAGCTTCTTGAGCTCTCGGTATATATTGAATATTAGTCCCCTATG
ACATTTAGGATTGGTAAAAACTCTTTCCCAATCGGTTGGTGGCCTTTTTG
TCTTATTGACAGTATCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAAG
TCCCATTTGTCGATTATTGATCTTAAAGCACAGGCCATTGCTGTTCTGTT
TAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGTTTCCCCCACTTTCTC
CTCTGTAAAGTTCAGTGTCTCTGGTTTTATGTGGAGTTCTTTGATCCACT
TAGACTTGAGCTTTGTACAAGGAGATAAGATTGGATCAATTCTCATTCTT
CTACATTGTAACTGCCAGTTGTGTCAGCACAATTTGTTGAAAATGCTGTC
TTTTTTACCCTGGAATGTTTTAGCTTTCTTGTCAAAGATCAAGTAACTAT
AGCTGTGTGTGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACC
TGTCTGTCGCTGTACAAGTACCATGCAGTTTTTATTACAATTGGCCTGTA
GTACAGCTTGAGATCAGACATGGTGATTCTCCCAGAGGTTGTTTTATTAG
TG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTTGGGGCAAAAAGGATGAAAGGAT
CGAGAGAGGATCCTGGGGTAAGATAGTCCCCTGAGAGCCTGTGTCTCTAT
GTGGACCGGCTGCTTTAGTTTGGGGAACTTCTTGAGACAATTCCACTCTA
GGGCATGGCTGACCTTGAGCTAAAATCTCTTACCTTGGCCTCCCAGGTGC
TGGGGTTATAGTCGCAAATGACCATGCCTGGCTATTTGGACAGATCAGTG
AGGATTAAGTATATTCACCACTGGAAGTTAAGAGCTATGGATTTATTAGC
ATTATTAACTGTATGTACATAATGGATTTCACTGTGGTGTTTATACCGGC
ATGTTTTTGTTTATCCACTCTCTTTCCTACTGATCTCTTGTCTCACCAAT
TAGTCCTCTTCCTATTTTCAGGTCTTTTTAAAAAAATCTATAGGTCCTCA
AGGAGCGAGCAGCTCTTCCCTCCCCCATGCTGTATTTTGGGGACTGTAAC
TCAGTTGGTAGAGTGCTACTGAGCATACAGGAAAACTTAGACTCAGTACC
CAGCACTTGAAACGTAGAGGAAAATAAAAAAAATTCAATGACATCTTTAG
CTTGAGACTAGCCTGGGATACGAGAAACCCTGAACCCCACCCCACCCCAC
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_n17.g1 MSMg01no045_n17.g1 CHROMAT_FILE:
MSMg01no045_n17.g1 PHD_FILE: MSMg01no045_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:55 2005
         (629 letters)



>mm_chr13_13453545_13454572
          Length = 1028

 Score = 1073 bits (555), Expect = 0.0
 Identities = 615/645 (95%), Gaps = 19/645 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttggggcaaaaaggatgaaaggatcgagagaggatcctggggtaagatagtcccctg 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 889 agtttggggcaaaaaggatgaaaggctcgagagaggatcctggggtaagatactcccctg 830

                                                                       
Query: 61  agagc----------------ctgtgtctctatgtggaccggctgctttagtttggggaa 104
           |||||                ||||||||||||||||||||||||||||||| |||||||
Sbjct: 829 agagcctgtgtcattatacagctgtgtctctatgtggaccggctgctttagtctggggaa 770

                                                                       
Query: 105 cttcttgagacaattccact-ctagggcatggctgaccttgagctaaaatctcttacctt 163
           |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct: 769 cttcttgagacaattccactac-agggcatggctgaccttgagctaaaacctcttacctt 711

                                                                       
Query: 164 ggcctcccaggtgctggggttatagtcgcaaatgaccatgcctggctatttggacagatc 223
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 710 ggcctcccaggtgctggggttatagtcacaaatgaccatgcctggctatttggacagacc 651

                                                                       
Query: 224 agtgaggattaagtatattcaccactggaagttaagagctatggatttattagcattatt 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 agtgaggattaagtatattcaccactggaagttaagagctatggatttattagcattatt 591

                                                                       
Query: 284 aactgtatgtacataatggatttcactgtggtgtttataccggcatgtttttgtttatcc 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aactgtatgtacataatggatttcactgtggtgtttataccggcatgtttttgtttatcc 531

                                                                       
Query: 344 actctctttcctactgatctcttgtctcaccaattagtcctcttcctattttcaggtctt 403
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 attctctttcctactgatctcttgtctcaccaattagtcctcttcctattttcaggtctt 471

                                                                       
Query: 404 tttaaaaaaatctataggtcctcaaggagcgagcagctcttccctcccccatgctgtatt 463
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 470 ttt-aaaaaatctataggtcctcaaggagcgagcggctcttccctcccccatgctgtatt 412

                                                                       
Query: 464 ttggggactgtaactcagttggtagagtgctactgagcatacaggaaaacttagactcag 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 411 ttggggactgtaactcagttggtagagtgctactgagcatacaggaaaacttagattcag 352

                                                                       
Query: 524 tacccagcacttgaaacgtagaggaaaataaaaaaaattcaatgacatctttagcttgag 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tacccagcacttgaaacgtagaggaaaataaaaaaaattcaatgacatctttagcttgag 292

                                                        
Query: 584 actagcctgggatacgagaaaccctgaaccccaccccaccccacc 628
           ||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 291 actagcctgggatacgagagaccctgaaccccactccaccccacc 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space:   630142
Effective search space used:   630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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