Query= MSMg01no046_b02.b1 MSMg01no046_b02.b1 CHROMAT_FILE:
MSMg01no046_b02.b1 PHD_FILE: MSMg01no046_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:10 2005
(559 letters)
>mm_chr13_81908742_81909700
Length = 959
Score = 988 bits (511), Expect = 0.0
Identities = 538/547 (98%), Gaps = 2/547 (0%)
Strand = Plus / Minus
Query: 6 gaattctcattagtattcaggcactaaacatgctagtgaatacaacacagaggagaatat 65
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaattctcattagtaatgaggcactaaacatgctagtgaatacaacacagaggagaatat 654
Query: 66 taatagggttatttttagctgccacctacatacaacatcaagacaacatctagaggggga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 taatagggttatttttagctgccacctacatacaacatcaagacaacatctagaggggga 594
Query: 126 gcaaaagaatggttcttttcgtttaataaaccataatgttcctgaaaaattcttctcttt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gcaaaagaatggttcttttcgtttaataaaccataatgttcctgaaaaattcttctcttt 534
Query: 186 cctccccaaattggggcatctaattatacaaagtgattgctgtggcaacagattatatga 245
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cttccccaaattggggcatctaattatacaaagtgattgctgtggcaacagattatatga 474
Query: 246 gtccaaagggtagtaaaagggagggaggaagagaagacagaaaggagagaaaataggatt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtccaaagggtagtaaaagggagggaggaagagaagacagaaaggagagaaaataggatt 414
Query: 306 acaggaaaagaaaggccagtttgatattctgtggattctgggtttgcaaagatctgggtt 365
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 413 acaggaaaagaagggccagtttgatattctgtggattctgggtttgtaaagatctgggtt 354
Query: 366 tgctaacaaaagtgccctgtggtaggacagcagagtaaggctcccttcaacataactgac 425
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 353 tgctaacaaaagtgccctgtggtaggacagcagagtaaggctcccttcaacgtaactgac 294
Query: 426 aggggacttagagaaactgcattgggaagccatttagactgtgcatgaacatcgaaactg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aggggacttagagaaactgcattgggaagccatttagactgtgcatgaacatcgaaactg 234
Query: 486 aagtgcacaaaccttttgaaccagttttctaaaa-tattttaatttttaaaaaatgtatg 544
|||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 233 aagtgcacaaaccttttgaaccagtttt-taaaaatattttaattttaaaaaaatgtatg 175
Query: 545 tgtgtgt 551
|||||||
Sbjct: 174 tgtgtgt 168
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_b02.g1 MSMg01no046_b02.g1 CHROMAT_FILE:
MSMg01no046_b02.g1 PHD_FILE: MSMg01no046_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:10 2005
(476 letters)
>mm_chr13_81764129_81765004
Length = 876
Score = 897 bits (464), Expect = 0.0
Identities = 473/476 (99%)
Strand = Plus / Plus
Query: 1 aaagggcagaacgaaacagaccatcaagaattgggggaaaaataccattcaaataaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagggcagaacgaaacagaccatcaagaattgggggaaaaataccattcaaataaaaga 260
Query: 61 tgaaattaggggctggagagatggctcagcggttaagagcactgactgctcttccagagg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tgaaattaggggctggagagatggctcagcagttaagagcactgactgctcttccagagg 320
Query: 121 tcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaacaagatctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaacaagatctgg 380
Query: 181 cgccctcttctggagtgtctgaagacagctacagtgtacttacatataataaataaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgccctcttctggagtgtctgaagacagctacagtgtacttacatataataaataaataa 440
Query: 241 gtctttttttaaaaagatgaaattaataatccacaaatgaacaaaaactatgagaatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctttttttaaaaagatgaaattaataatccacaaatgaacaaaaactatgagaatttc 500
Query: 301 tttctcataaccttcctttcaagaaaggattttcagagcaatattcaagggcactagaaa 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tttctcataaccttcctttcaagaaaggattttcagagcaatatttaagggcactagaaa 560
Query: 361 gtaaactgaatctgtatgaaaaaattagggactactagtaaagctcccacaacagaactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 gtaaactgaatctgtatgaaaaaattagggactactagtaaagctcccacaacagaagtg 620
Query: 421 cataaaatccaaaacaggagttatgacacacaggaaaggtggttttgctggtggtg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cataaaatccaaaacaggagttatgacacacaggaaaggtggttttgctggtggtg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
