Query= MSMg01no046_g04.b1 MSMg01no046_g04.b1 CHROMAT_FILE:
MSMg01no046_g04.b1 PHD_FILE: MSMg01no046_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:32 2005
(244 letters)
>mm_chr13_60373310_60373952
Length = 643
Score = 404 bits (209), Expect = e-117
Identities = 236/245 (96%), Gaps = 3/245 (1%)
Strand = Plus / Plus
Query: 1 ctattttgctttgacattctccctcaccatgaaaatatgaagtaaggattaattgacttg 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattttgctctgacattctccctccccatgaaaatatgaagtaaggattaattgacttg 260
Query: 61 aagacttgttcttttcatcattcccaaaaacccctt-ttcaagacccctgaccaatctta 119
||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |
Sbjct: 261 aagacttgttc-tttcatcattcccaaataccccttcttcaagacccctgaccaatctca 319
Query: 120 gactggtccttggcaatgagagaaccagtctcaaacaagatgtgggaggcacaacggcaa 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 gactggtccttggcaatgagagaaccagtctcaaacaagatgtgggaggcacaatggcaa 379
Query: 180 aaataataatgtgtacactcagcccaggaagctgggtaattttccttcatgctggaagaa 239
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 380 aa-taataatgtgtacactcagctcaggaagctgggtaattttccttcatgctggaagaa 438
Query: 240 agggc 244
|||||
Sbjct: 439 agggc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no046_g04.g1 MSMg01no046_g04.g1 CHROMAT_FILE:
MSMg01no046_g04.g1 PHD_FILE: MSMg01no046_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:32 2005
(341 letters)
>mm_chr13_60534023_60534763
Length = 741
Score = 652 bits (337), Expect = 0.0
Identities = 340/341 (99%)
Strand = Plus / Minus
Query: 1 atttctgagagaaaacagccatgtttcagttgtgcaggtgacaagagactgaaaaatttg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 412 atttctgagagaaaacagccatgtttcagttgtgcaggtgacaagagactgaaaaattag 353
Query: 61 gaagagattttatctgggtagaaagaatctattacagaacttttgatgcagacttcctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaagagattttatctgggtagaaagaatctattacagaacttttgatgcagacttcctgt 293
Query: 121 ctcccctttctcttctgcaccatgcagatgttttatgaactctatttgcagagatgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctcccctttctcttctgcaccatgcagatgttttatgaactctatttgcagagatgaaat 233
Query: 181 tgatgtccagaaaaacgaactaaattcatttttgtcttagtcagggtttctattcctgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgatgtccagaaaaacgaactaaattcatttttgtcttagtcagggtttctattcctgca 173
Query: 241 caaacatcatgaccaagaagcaagttggggaagaaaaggtttattcagcttacacttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 caaacatcatgaccaagaagcaagttggggaagaaaaggtttattcagcttacacttcca 113
Query: 301 tactgctgctcatcaccaaaggaagtcagaactggaactca 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tactgctgctcatcaccaaaggaagtcagaactggaactca 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
