Query= MSMg01no046_h10.b1 MSMg01no046_h10.b1 CHROMAT_FILE:
MSMg01no046_h10.b1 PHD_FILE: MSMg01no046_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:38 2005
(603 letters)
>mm_chr13_103242369_103243371
Length = 1003
Score = 907 bits (469), Expect = 0.0
Identities = 478/481 (99%)
Strand = Plus / Minus
Query: 123 gtaaagatcctttcccaatctgttgatggtctttttgtcttattgacggtgtcttttgcc 182
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 gtaaagatcctttcccaatcttttgatggtctttttgtcttattgacggtgtcttttgcc 944
Query: 183 ttgcagaaactttggaatttcattaggtcccatttgtcaattctcgatcttacagcacaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 ttgcagaaactttggaatttcattaggtcccatttgtcaattctcgatcttacagcacaa 884
Query: 243 gccattgctgttctgttcaggaaattttcccctgtgctcatatcttcaaggctttccccc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gccattgctgttctgttcaggaaattttcccctgtgctcatatcttcaaggctttccccc 824
Query: 303 actttctcctctataagtttttaacccaactttctggccaacaaccaagtggctagcttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 actttctcctctataagtttttaacccaactttctggccaacaaccaagtggctagcttt 764
Query: 363 acatatctctgctccatgtctgttcccctccaagtggacacctcctgattctctggcttc 422
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 acacatctctgctccatgtctgttcccctccaagtggacacctcctgattctctggcttc 704
Query: 423 tgctttcgttcccttgtgtcactcctttgcctggaaattccaccctcctccttccttccc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgctttcgttcccttgtgtcactcctttgcctggaaattccaccctcctccttccttccc 644
Query: 483 aagttattggctgtcaagatctttattataaccaatcagtagtgagacaacctctgatcc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aagttattggctgtcaagatctttattataaccaatcagtagtgagacaacctctgatcc 584
Query: 543 acttctagattgcctttaggcagttaaggaaggacgacgatttacaaagtagaaataaaa 602
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 583 acttctagattgcctttaggcagttaaggaaggacgaagatttacaaagtagaaataaaa 524
Query: 603 a 603
|
Sbjct: 523 a 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_h10.g1 MSMg01no046_h10.g1 CHROMAT_FILE:
MSMg01no046_h10.g1 PHD_FILE: MSMg01no046_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:38 2005
(610 letters)
>mm_chr13_103080592_103081599
Length = 1008
Score = 1071 bits (554), Expect = 0.0
Identities = 596/610 (97%), Gaps = 2/610 (0%)
Strand = Plus / Plus
Query: 1 attaaacagcagagtgaagtattgaaaaatgtatagatccttactgataagcaaataaat 60
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 attaaacagcagagtaaagtattgaaaaatgtatagatccttagtgataagcaaataaat 260
Query: 61 acaaagtaatgcacttctttggggttatgaataagtcatttttaactccactataacaat 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaagta-tgcacttctttggggttatgaataagtcatttttaactccactataacaat 319
Query: 121 gcaaagtactaagagtaattgtaatcacaaaaattgttaatgtttacaatagtgttaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcaaagtactaagagtaattgtaatcacaaaaattgttaatgtttacaatagtgttaaaa 379
Query: 181 gccagttacatcaataacataaactacgaagtgggaataagacagtgaagattttggaca 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 gccagttacatcaataacataaactatgaagtgggaataagacagtgaagattttggaca 439
Query: 241 tattgtgataaaaaaatgttttatgtaactgtcgtaccaatttacaaataaaagctgtag 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tattgtgataaaaaa-tgttttatgtaactgtcgtaccaatttacaaataaaagctgtag 498
Query: 301 tagatataacaaggatagatgaaaatatatgagcataccacagtgaaatcagcaaatgac 360
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 499 tagatacaacaaggatagatgaaaatatatgagcataccacaatgaaatcagcaaatgac 558
Query: 361 aaaggaagagattttaaaaaaatagtagcatagaactatgaaacagatagtgaaacaatt 420
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 559 aaaggaagagatttaaaaaaaatagtagcatataactatgaaacagatagtgaaacaatt 618
Query: 421 aagtaaagagcccacctagccagggctcacctttcagtggttactttctttaaatctgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagtaaagagcccacctagccagggctcacctttcagtggttactttctttaaatctgaa 678
Query: 481 tggattgttcttacctaagattagtttagtgaattttacatgataaaattatagaagact 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 679 tggattgttcttacctaagattagtttagtgaattttaaatgataaaattatagaagact 738
Query: 541 cacttgaatttcaggacattaggaagctaaaaggaaaagattctaatgctttccaaaaga 600
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 739 cactagaatttcaggacattaggaagctaaaaggaaaagattcggatgctttccaaaaga 798
Query: 601 acaggagtgg 610
||| ||||||
Sbjct: 799 acaagagtgg 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1008
Length adjustment: 10
Effective length of query: 600
Effective length of database: 998
Effective search space: 598800
Effective search space used: 598800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
