Query= MSMg01no047_a19.b1 MSMg01no047_a19.b1 CHROMAT_FILE:
MSMg01no047_a19.b1 PHD_FILE: MSMg01no047_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:20 2005
(552 letters)
>mm_chr13_110718878_110719828
Length = 951
Score = 681 bits (352), Expect = 0.0
Identities = 472/552 (85%), Gaps = 65/552 (11%)
Strand = Plus / Plus
Query: 4 ggaattctaaaacacagaatacaccattcagacctctgcaattagactttgctttctgat 63
||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct: 262 ggaattctaaaacacagaatacaacactcagacctctgcaattagactttgctttatgat 321
Query: 64 ttaaatgctgcacacacacacacacacacacacacacacacacacacacacacaaataca 123
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaaatgctgcacacacacacacacacacacacacacacacacacac------------- 368
Query: 124 cacacacacaaacacacacacacacacacacacacacacacacactggtgcataatgaga 183
|||||||||||||||
Sbjct: 369 ---------------------------------------------tggtgcataatgaga 383
Query: 184 acaaagacctcaaacgcatccatggagcaatctcttcttctttcttccatcctagttata 243
||||||| ||||||| |||||| |||||||||||||| |||||||||| |||||||| ||
Sbjct: 384 acaaagatctcaaacacatccacggagcaatctcttcctctttcttccctcctagttgta 443
Query: 244 accacgattcgctgtaaaggttttaaaccatttagagtagaacagagccagtaagaaatt 303
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 accacgattcgctgtaatggttttaaaccatttagagtagaacagagccagtaagaaatt 503
Query: 304 catcaacataaaatagaggtaactttcaaacatcgctacatacccgattcaatagaattt 363
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catcaacataaaatacagataactttcaaacatcgctacatacccgattcaatagaattt 563
Query: 364 tcacagagctttcattaagaggcacttttgcatcacccatcctaaatcaagtgggggagc 423
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 564 -cacagagctttcattaagaggcacttttgcatcacccatcctaaatcaactgggggtgc 622
Query: 424 aatggtgttgcaaggagagacattctgttaggtt--tttttttttttaaa-ccatccttc 480
||||||||||||||| ||||||||||||| || |||||||||||||| |||||||||
Sbjct: 623 aatggtgttgcaagg---gacattctgttagtttcttttttttttttaaagccatccttc 679
Query: 481 cttacccatggaaatagtctataaatagcttaataaacacagttattcaaaatgacagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttacccatggaaatagtctataaatagcttaataaacacagttattcaaaatgacagaa 739
Query: 541 attaaccttgta 552
||||||||||||
Sbjct: 740 attaaccttgta 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space: 510022
Effective search space used: 510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_a19.g1 MSMg01no047_a19.g1 CHROMAT_FILE:
MSMg01no047_a19.g1 PHD_FILE: MSMg01no047_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:20 2005
(475 letters)
>mm_chr13_110775422_110776296
Length = 875
Score = 861 bits (445), Expect = 0.0
Identities = 463/469 (98%)
Strand = Plus / Minus
Query: 1 attgcatctatgttgcgtttgtaaaactgtttctggcttaacagaagaaacactcggatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 attgcacctatgttgcgtttgtaaaactgtttctggcttaacagaagaaacactcggatc 517
Query: 61 tgcatgtcattcatgcctctagcaggttttcaagtatttttataatacacatgtagctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgcatgtcattcatgcctctagcaggttttcaagtatttttataatacacatgtagctct 457
Query: 121 ggctgctcaccctaccagggcagacagaacctttgccaggacactgcttggagtgtgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggctgctcaccctaccagggcagacagaacctttgccaggacactgcttggagtgtgtgc 397
Query: 181 cacttggctgacaaacatggcagactctgacagaaagcaaaaggtgatcgggacatgtgt 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 396 cacttggctgacaaacatggcagactctgacagaaagcaaaaggtgatggggacatgtgt 337
Query: 241 tccttgcagccattacaaaaccaccccagcgatataaccagtgactctgtccctgccctt 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 336 tccttgcagccattacaaaaccaccccagcgatataacgagtgactctgtccctgccctt 277
Query: 301 tcaggatgagatgcttttccctcataatatggaaacattaagctaaattgacctcaagag 360
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct: 276 tcaggatgagatgcttttccctcgtagtatggaaacattaagctaaattgacctcaaggg 217
Query: 361 gtgccatgccatcaagctccccaaagatatgttgaagtcctacccccaacatgttaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gtgccatgccatcaagctccccaaagatatgttgaagtcctacccccaacatgttaaaat 157
Query: 421 gtggtcctacatttggctgggctttggtaagggaattgcttttttgttt 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gtggtcctacatttggctgggctttggtaagggaattgcttttttgttt 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
