BAC Information

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BAC

Clone NameMSMg01-047A21
Chromosome13 (Build37)
Map Location 36,721,151 - 36,909,092
singlet/doubletdoublet
Overlap geneNrn1
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758
Downstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047A21.T7 (MSMg01no047_a21.b1)MSMg01-047A21.TJ (MSMg01no047_a21.g1)
ACCAG277275AG277276
length705873
length of high quality
(start - end)
333 (46 - 378)193 (72 - 264)
definitionCHROMAT_FILE: MSMg01no047_a21.b1 PHD_FILE: MSMg01no047_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:20 2005CHROMAT_FILE: MSMg01no047_a21.g1 PHD_FILE: MSMg01no047_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,908,764 - 36,909,092)(36,721,151 - 36,721,311)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGATTATCTGGCTTTTGGACAGTCATCATTTAACTTCCAGCCT
CCATGATGCTATTAGTCAGATCTACATTACTATAAGGAAACATCTAAGCT
AACTTGGGGCTAGGCATCAGTGTTTATGAAGCTTTAGTCTATGGTCAGTT
GATCCTGTGGCTTTGGGGCCTGAGGCAAGATGGCACGGTGAGATGCACAT
GTGGATGAAGCTGTTCAGATCCATGGAGTCTGAGAATCATAGAAAGAGAG
AGGAGGTTTCTATATCCCTTTCAAATGCATATGTCTCCAGTGACATAAAT
TTATCCATCGAGGTCATGCCCTTTGAAGTTATCAGCACAGGCCAGAACCT
TTGGGAGATACACACATCATAACAGTGAACAAGCTAGCCAGTATGTGTGC
ATGCGTGTGCGTGTACATATACATCATTTCTCTGAAGGCTGTCACAAAGT
CTAATGCTGCCAACACCTTGGGCTTAGGGTCTCAATGGTCTTGGCATATG
AATTTATAGAGAGCATGAGTATTCTCTTCATACCAGGTTTTCTTTGTAAT
TTGCCGCTGGTTGAGATCTGTGCCATCTCATAAATATATGTACTGCATAT
ACAACTAATTAGTATTTATGTGCCGCCTTTCAGTTTTATTATATCCCCCC
CCTTA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAATCCATAGTACTGAAGTGCATGAACAA
ACAGACCTTACTAACCCACGGACCTGAAAAGCTCTTAGCAAAAGTGACTT
AATAAGTTTTCAGGATGCTGGGTGGGGCAGTGATTTCTTAGCTATGTCAC
CAAAGCACTGAGCTGTATGTATATGTATATGTATATGTATATGTATATGT
ATATGTATATGTATATGCATATGTATGCCTCTTCTCCCTCCCCTCCCCCC
CCCCCCCTCCTTTTCTTTTTCCTTCCCCCTTCCCTCCTTCTCCCCTTCCC
ACCATCTTACATCTTTTTTTTTTTCCCCCCCCCCCCCCCCTTCTCTCCCC
TCCTCTTTTACTCTTCACCTCTTCTCCTCTCCCCCCTCCCTCCTCCCACC
AAACACTTCCACCTCCCCCTCCTTTTGGTTCTTCCCTCCCCTCTTCCCCC
CTCTCACCCCCCTTCCTCTTATTTTTCTTCCTCCCTCTCCTTCTTCTCCT
CCTCTTTTCTTCTCTCCCTCTTCTTTCACTTACCTTTTTCCCCTCCCTTC
TTCTTCTCACCCCTCTCTTATCTCTCATCACCCCTCTCCCCCCTCTGTAT
TCTACTTTTTCTTTCTTACCACCCACTACTTACTATTCTCTTTCCCCTCT
ATTTTTATTTTCCCTCCTTCTTTCTCTTTCCCCCCCGCCATTATCCTTTC
TCTTCACACATCTCCACCCACCCCCCTTTCTCCCGCCCCCATTTAACTTC
CCCTCCCCTCACGTCTCCATCTACTCTTACTAACCATAGTCACATCCCCT
CTCTCTTTTTTTATCACCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_a21.b1 MSMg01no047_a21.b1 CHROMAT_FILE:
MSMg01no047_a21.b1 PHD_FILE: MSMg01no047_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:20 2005
         (333 letters)



>mm_chr13_36908560_36909292
          Length = 733

 Score =  621 bits (321), Expect = 0.0
 Identities = 327/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgattatctggcttttggacagtcatcatttaacttccagcctccatgatgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaattctctgattatctggcttttggacagtcatcatttaacttccagcctccatgatgc 474

                                                                       
Query: 65  tattagtcagatctacattactataaggaaacatctaagctaacttggggctaggcatca 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 473 tattagtcagatctacattactataaggaaacacctaagctaacttggggctaggcatca 414

                                                                       
Query: 125 gtgtttatgaagctttagtctatggtcagttgatcctgtggctttggggcctgaggcaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtgtttatgaagctttagtctatggtcagttgatcctgtggctttggggcctgaggcaag 354

                                                                       
Query: 185 atggcacggtgagatgcacatgtggatgaagctgttcagatccatggagtctgagaatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atggcacggtgagatgcacatgtggatgaagctgttcagatccatggagtctgagaatca 294

                                                                       
Query: 245 tagaaagagagaggaggtttctatatccctttcaaatgcatatgtctccagtgacataaa 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aagaaagagagaggaggtttctatatccctttcaaatgcatatgtctccagtgacataaa 234

                                        
Query: 305 tttatccatcgaggtcatgccctttgaag 333
           |||||||||||||||||||||||||||||
Sbjct: 233 tttatccatcgaggtcatgccctttgaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no047_a21.g1 MSMg01no047_a21.g1 CHROMAT_FILE:
MSMg01no047_a21.g1 PHD_FILE: MSMg01no047_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:20 2005
         (193 letters)



>mm_chr13_36720951_36721543
          Length = 593

 Score =  296 bits (153), Expect = 6e-85
 Identities = 159/161 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatccatagtactgaagtgcatgaacaaacagaccttactaacccacggacctgaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 caatccatagtactgaagtgcatgaacaaacagaccttactaaaccacggacctgaaaag 260

                                                                       
Query: 61  ctcttagcaaaagtgacttaataagttttcaggatgctgggtggggcagtgatttcttag 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ctcttagcaaaagtgacttaataagttttcagaatgctgggtggggcagtgatttcttag 320

                                                    
Query: 121 ctatgtcaccaaagcactgagctgtatgtatatgtatatgt 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatgtcaccaaagcactgagctgtatgtatatgtatatgt 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)