BAC Information

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BAC

Clone NameMSMg01-047I20
Chromosome13 (Build37)
Map Location 109,936,585 - 109,936,886
singlet/doubletsinglet
Overlap genePde4d, LOC100040968
Upstream geneNdufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047I20.T7 (MSMg01no047_i20.b1)MSMg01-047I20.TJ (MSMg01no047_i20.g1)
ACCAG277579AG277580
length713745
length of high quality
(start - end)
305 (45 - 349)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no047_i20.b1 PHD_FILE: MSMg01no047_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:55 2005CHROMAT_FILE: MSMg01no047_i20.g1 PHD_FILE: MSMg01no047_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATCTTGGGCATCCAAATCGTACCACAGAACCTTTAGATTATATGT
TATTACTTATACTGCATGAAAGAATTATCAAACTACATTCACTGTTAACA
AATATATTTTTAAGAACAGCAACAAACAAAACATCTTCAAGTTAAATTCA
CCTTGATTTTTTTTCCCCTTTTTTCTACTGAAGATCCATAAAACATGTTT
TGCAGTTACGTTGCTTCCTTTAGGTTTAAGCAACACCTTGTTTATGCATC
AAATATTCCCCTTCCTTTCTGGTATATCTTACAAACTCACCTTTCAGAAA
GAAATGCAGACAATATTATTCTACCCCACCCAACCTGTAGCTCGCTACCC
TTTTCTGATAACTAGGTTGCCACTACACATAGATCATCCTACCCCGAAGT
AGAGCGGCTAAATGACCTCTGAACGCGAGTGCCTAGATCGCTAGTCTCCT
ACAACTGAACATTTGTTGCTGTGCTTACCCCGACTGCCTCTGCACAACAC
CATGTCACGCTCCGACTTATTCTACCACACCACTTGTTTTACCGACCCCA
AGTACCACCTCTTACAAATCTTAGCCCCCACCAGTGTTCTTCTCCTCTTC
CCCTGCCACCCTTTAAATCCATCCCCTCCCCCCTACTGCCTTTTATTTGA
CACCCTACTCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGGATTCTTTGGGAAGTGGAA
GTGCAAGAAGGGACCCTACTTATACTGGAGTGCAGTCAAGGAAGAAATTC
TTCATTTATAGTATGATAGGGGCTCAAGTTCAGCTTTTAGAGTATTTGCC
TGAAATATGCAAGGCCCTGGATTTGACCCACTGAATTACAAAGTGATAAT
GATAGTAATAATAATACTATGTAAAGCTGCAACATAAGAACCAATAATAA
CAGTAACAATAATACTAAGTAAAACTGCATCCTACCTGGGCTGGCGAGAT
GGCTCAGCAGTTTTTTTTTTTCACCGCCCTCCCCAAGGACCTGAGTTCAA
TTCCCAGCAGTCTCATGGTGCCCCACAAAAATAAGAAATGGGTTGGGGGG
GCGGCTCTTCCTGCGTGTCTGAAGATATTTTACGTGTACTCATTACCTTC
TTTACACATTTCATTAATATCTTTCTTATCCCCCGCTTCTTGTTGTTGCT
CCCCTTATACTATTTTTTGCCGACTATTTCCATTCTTCCACCCTTATTTT
CCCTCGTTTTTTATCCCCCGCCTTTACTTGCACAAGTATTCCTCGCGCAC
AATCTGCCCACCTTGGTTCTCCCCACTTCCTCCTATTATTCTCTCTACTT
ATCCTGGGTCCACTCCCCCCTCCCGTCTGTTGTATCTCATCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_i20.b1 MSMg01no047_i20.b1 CHROMAT_FILE:
MSMg01no047_i20.b1 PHD_FILE: MSMg01no047_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:55 2005
         (305 letters)



>mm_chr13_109936382_109937086
          Length = 705

 Score =  553 bits (286), Expect = e-162
 Identities = 298/302 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatcttgggcatccaaatcgtaccacagaacctttagattatatgttattact 63
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatcttgggcatccaagtcgtaccacagaacctttagattatatgttattact 263

                                                                       
Query: 64  tatactgcatgaaagaattatcaaactacattcactgttaacaaatatatttttaagaac 123
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 264 tatactgcatgaaagaattatcaaaatacattcactgttaacaaatgtatttttaagaac 323

                                                                       
Query: 124 agcaacaaacaaaacatcttcaagttaaattcaccttgattttttttccccttttttcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcaacaaacaaaacatcttcaagttaaattcaccttgattttttttccccttttttcta 383

                                                                       
Query: 184 ctgaagatccataaaacatgttttgcagttacgttgcttcctttaggtttaagcaacacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgaagatccataaaacatgttttgcagttacgttgcttcctttaggtttaagcaacacc 443

                                                                       
Query: 244 ttgtttatgcatcaaatattccccttcctttctggtatatcttacaaactcacctttcag 303
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtttaggcatcaaatattccccttcctttctggtatatcttacaaactcacctttcag 503

             
Query: 304 aa 305
           ||
Sbjct: 504 aa 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)