BAC Information

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BAC

Clone NameMSMg01-048D20
Chromosome13 (Build37)
Map Location 8,264,162 - 8,264,688
singlet/doubletsinglet
Overlap geneAdarb2
Upstream geneLOC667611, EG623516, LOC791083, LOC382722
Downstream geneEG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048D20.T7 (MSMg01no048_d20.b1)MSMg01-048D20.TJ (MSMg01no048_d20.g1)
ACCAG278056AG278057
length1,2101,223
length of high quality
(start - end)		710 (27 - 736)527 (75 - 601)
definitionCHROMAT_FILE: MSMg01no048_d20.b1 PHD_FILE: MSMg01no048_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:57 2005CHROMAT_FILE: MSMg01no048_d20.g1 PHD_FILE: MSMg01no048_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAACTATGGGCGCTATACATCCTAAGGGAGAGGATCCGCGGAATTCAGT
TGGACCTAATAACCATTCAATTAAGTTATTTATTTATTTATTTATTTATT
TATTTGATTTTTTTCTTCTTTTTTTTTGAATTAGGTATTTTCTTCATTTA
CATTTCCAATGCTACCCTGAAAGTCCTCCAAACCCTCCCACACCCCCCTA
CACCCCAACTCCCACTTCTTGGCCCTGGCATTCCCCTGCACTGAGGCATA
TAAAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATAGCCTACTAGG
TCATCTTCTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGT
TAGTTCATATTGTTGTTCCACCTCTAAGGTTGCAGACACCTTTAGCTCCT
TGGGTACTTTCTCTAGTTCCTCCATTGGGGGCCCTTGATCCATCCAAGAG
CTGACTGTGAGCATCCACTTCTGTGTTTGCTAGACCCCAGCATAGCCACA
CAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGTGTGTA
CAATGATGTCAGCGTTTGGGGGCTGATTATGGGATGGATCCCCAGAAATG
GCACTCTCTGGATGGTCCATCCTTTCCTCTCAGCTACAATCTTTGTCTAT
ATAACTCCTTCCACAGATAATTTGTTCGCAATTCTAAGAAGGAGCAAAGT
GTCCACACTTTGGACTTTGTTCTTCTTGAGTTTCATGTGTTTTGCAAGTT
GTATCTTGTATCTTGCGTATTCTAAGTTTCTGGGCTAATATCCACTTATC
AGTGAGTACTTATTGTGTGAGCACCTTTGTGATTGGTTTACCTCACTCAG
GATGATGCCTTCCCAGTTCCAACATTTGCCTAGTGATTTTCTAATTTCAT
TCTTTTTATAATCAAATTATTACTCTATTGTGTAAATGTACCTTATTTTC
TGGATTCCTTTCCTTCGTGTGAAGTGCAACCTGTGTTTTTTTCCACTTTT
TGTCTATAATCAAATTATTTTGTTTTGTATCTAATTTCAAAATTATTCCT
TTTTTATCCTGATTGTTATTCCTCTTTTTTATCTTATTCTTATTAAAATA
TTTTTTTTAATCCTCCTTATTACTTCTCTTCTCTATTTTTCTATTTACAC
TATCTATTTTTTTTTCTATATTATTTCTTAGCATCTTTTTTTTTTTCTAT
ACTATCTATT

TTTTTATAGAGTGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTATGTCTCCTGGATTGCCTATTCTGTTCTT
GCCTCTTGTCAGCACCCTGTGTGATTCTATAGAGAGTGATCACAAGCAGG
TGATTAGGATGTCTGTGCAGGCACCATGACGAGAAACGATTTCAGACAAT
GGGAAGCTCAGACGCCTGGAAGGGGCGGAGGAGGCACGAAGTCAGTGTCA
CAGATAAATGGGAATTGCATTTATTACCCGTCTATTGAGTGAGTCAGCTA
CACACCTCAAGCCTTTTTCTTATTTTGATTTTTAAATGGAATTTCAAATT
CTTTATATGGAAAGAAAAAGCAAGGTCAAATGCAGGTAATTCCATCTTCC
TGTCATACACCCACTTTTCAAACATAATTTTCTAGGTTTGCTGTCTGTTC
TCATATCCCCTCTTTTTCCTTCTCTGCCAAGTGACAGCCTGTTTCTGGGG
CAATGAAGATTCCAGAGAGGCAGCACTGTCTGCTGATGTCAACACTGTCT
TCCTCACCCACATGCACAGGAGTCTTCTAGAAGTCTGGGCTCTGGTGGTG
GTGTTGTGGCTGTGNCTGTTGTTGNTGTTGTTTNTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTT
TTTTTTTTTTTCCTCTTCTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTT
TTTTTCTTTTCTTTTTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTCTT
TTTTTTTTTCTTTTCTTTTTCTTTTTCTTTTTCTTCTTTTTTTATTTTTT
TTTTTTTTTTTTTTTCTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTATTTTTTTTTTTCTTTTTATTCCTTCTTTTTATATTTATTTTTT
TTTTTTTCTTTTTTTTTCTTTNTCTTTTTTCTTTTTTTTTCTTTTTATCT
TTCCTTTTCTACTTTTTCCTTTTTCTTTTCTCCTCCTTTTTTTTTCATCT
TTCTTATTCTCTTCTTTCTCTTTTCTTCTTCTTATCCTTCTTTATTCTCT
TCTCTTCATCTTTACTTTATTTCCTCTTCTANTTCTATCTTTCATTCTCT
TCTTANTTTAATCTATCCTCTTTCATCTTTTTATTCTACTCTCTTTATCT
TTCTTTTTATTCTCTATTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_d20.g1 MSMg01no048_d20.g1 CHROMAT_FILE:
MSMg01no048_d20.g1 PHD_FILE: MSMg01no048_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:57 2005
         (527 letters)



>mm_chr13_8263962_8264888
          Length = 927

 Score =  980 bits (507), Expect = 0.0
 Identities = 522/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctggattgcctattctgttcttgcctcttgtcagcaccctgtgtgattctatagag 60
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 727 tctcctggattgcctattctgttcttgcctctcgtcagcgccctgtgtgattctatagag 668

                                                                       
Query: 61  agtgatcacaagcaggtgattaggatgtctgtgcaggcaccatgacgagaaacgatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agtgatcacaagcaggtgattaggatgtctgtgcaggcaccatgacgagaaacgatttca 608

                                                                       
Query: 121 gacaatgggaagctcagacgcctggaaggggcggaggaggcacgaagtcagtgtcacaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 607 gacaatgggaagctcagacgcctggaaggggcggaggaggcacgaagtcagtatcacaga 548

                                                                       
Query: 181 taaatgggaattgcatttattacccgtctattgagtgagtcagctacacacctcaagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taaatgggaattgcatttattacccgtctattgagtgagtcagctacacacctcaagcct 488

                                                                       
Query: 241 ttttcttattttgatttttaaatggaatttcaaattctttatatggaaagaaaaagcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttttcttattttgatttttaaatggaatttcaaattctttatatggaaagaaaaagcaag 428

                                                                       
Query: 301 gtcaaatgcaggtaattccatcttcctgtcatacacccacttttcaaacataattttcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtcaaatgcaggtaattccatcttcctgtcatacacccacttttcaaacataattttcta 368

                                                                       
Query: 361 ggtttgctgtctgttctcatatcccctctttttccttctctgccaagtgacagcctgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggtttgctgtctgttctcatatcccctctttttccttctctgccaagtgacagcctgttt 308

                                                                       
Query: 421 ctggggcaatgaagattccagagaggcagcactgtctgctgatgtcaacactgtcttcct 480
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 307 ctggggcaatgaagattccagagaggcagcgctgtctgctgatgtcaaccctgtcttcct 248

                                                          
Query: 481 cacccacatgcacaggagtcttctagaagtctgggctctggtggtgg 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cacccacatgcacaggagtcttctagaagtctgggctctggtggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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