Query= MSMg01no048_f03.b1 MSMg01no048_f03.b1 CHROMAT_FILE:
MSMg01no048_f03.b1 PHD_FILE: MSMg01no048_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:07 2005
(740 letters)
>mm_chr13_39150296_39151436
Length = 1141
Score = 940 bits (486), Expect = 0.0
Identities = 529/554 (95%), Gaps = 19/554 (3%)
Strand = Plus / Minus
Query: 205 acagagcatgaataagaaacgtaagtatgggatcttacacctcccaaagtagaaactatc 264
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1141 acagagcatgaataagaaacgtaagtgtgggatcttacacctcccaaagtagaaactatc 1082
Query: 265 ttgacagtaccactgttccccctggactgcagcagacagctggctgcaggcatatacaaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ttgacagtaccactgttccccctggactgcagcagacagctggctgcaggcatatacaaa 1022
Query: 325 t----------------ttgccttcttgccttcttgccttcttgccttcttgccttcttg 368
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tttgccttcttgccttcttgccttcttgccttcttgccttcttgccttcttgccttcttg 962
Query: 369 ccttcttgccttcttgccttcttgctctctagcttcgagataaagcctaatgccaatgca 428
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 961 ccttcttgccttcttgccttcttgctctctagctttgagataaagcctaatgccaatgca 902
Query: 429 ctctgtcagcagattcgaaagagggagaagaataaaaagagaatttgtttcctcttaatc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ctctgtcagcagattcgaaagagggagaagaataaaaagagaatttgtttcctcttaatc 842
Query: 489 cactcccagtgaaatcaccatggtttctggtttcttccatgaagataacatctctggagc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cactcccagtgaaatcaccatggtttctggtttcttccatgaagataacatctctggagc 782
Query: 549 ctgacagtataactcagtggtagggatagtagcattcatgagattatcagattcattctc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctgacagtataactcagtggtagggatagtagcattcatgagattatcagattcattctc 722
Query: 609 aacaccagagaaaaggaag--aaaaaaaaacacagatcagagaggatagaaaagaaagcc 666
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aggaccagagaaaaggaattaaaaaaaaaacacagatcagagaggatagaaaagaaagcc 662
Query: 667 tacatttctttcccaacatagcccatccatagacatagttattctaggtaagtcatattt 726
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taaatttctt-cccaacatagcccatccatagacatagttattctaggtaagtcatattt 603
Query: 727 tatgaataagttca 740
||||||||||||||
Sbjct: 602 tatgaataagttca 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1141
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1131
Effective search space: 825630
Effective search space used: 825630
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_f03.g1 MSMg01no048_f03.g1 CHROMAT_FILE:
MSMg01no048_f03.g1 PHD_FILE: MSMg01no048_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:08 2005
(519 letters)
>mm_chr13_39050019_39050945
Length = 927
Score = 874 bits (452), Expect = 0.0
Identities = 499/524 (95%), Gaps = 20/524 (3%)
Strand = Plus / Plus
Query: 1 agagcacttgtgctaacaaggaaatggagcccctgtcactgctaacacgacatctcatta 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agagcacttgtgctaacaaggaaatggagccactgtcactgctaacacgacatctcatta 260
Query: 61 ccaccaaacctgccctgtaaaagtctggcattcagtgtgcagctttacactacactac-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaccaaacctgccctgtaaaagtctggcattcagtgtgcagctttacactacactactg 320
Query: 119 ---ag--tatcgctggtcagaaa-catgagtgaggaaggcctctgctactctcaaactcc 172
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcagaatatcgctggtcagaaagcatgagtgaggaaggcctctgctactctcaaactcc 380
Query: 173 gatctccgatgcttgcagtctcacttctgtttctattgttaataattgatattgttatct 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctccgatgcttgcagtctcacttctgtttctattgttaataattgatattgttatct 440
Query: 233 aaagaatcagagccaggcatggagagatggcgtggtggttaaaaatgtttattcctcttg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaatcagagccaggcatggagagatggcgtggtggttaaaaatgtttattcctcttg 500
Query: 293 cagaagtttggttcccagcacccgtccttgttagttttgcaattgactattactctaccc 352
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 cagaagtttggttcccagcacccgtccttgttaggtttgcaattgactattactctaccc 560
Query: 353 tcagattcccatcagaaccctctcatgcatatatccacaagtacattcatacacacacac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagattcccatcagaaccctctcatgcatatatccacaagtacattcatacacacacac 620
Query: 413 acagacacacagacacacacccacacacacacacacaaaacaaataaatcttatacaacc 472
||| ||||||||||| | |||||||||| | |||||||||||||||||| |
Sbjct: 621 aca------cagacacacac----agacacacacacta--caaataaatcttatacaaac 668
Query: 473 gaacaaacaaacagggacaaagtccttatggtacgggggggggg 516
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaacaaacaaacagggacaaagtccttatggtacgggggggggg 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 927
Length adjustment: 10
Effective length of query: 509
Effective length of database: 917
Effective search space: 466753
Effective search space used: 466753
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
