MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-049L10
Chromosome	13 (Build37)
Map Location	10,690,657 - 10,690,978
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Zmynd11, Chrm3, LOC100039604
Downstream gene	LOC100039648, Zp4, Ryr2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Zmynd11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66505 MGI:1913755
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chrm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12671 MGI:88398
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039604 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039604
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC100039648 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039648
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins pseudo : _no_value

name	Zp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664793 MGI:3690088
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Ryr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20191 MGI:99685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zmynd11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89337271 GeneID:66505 MGI:1913755
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, MYND domain containing 11 transcript_id : NM_144516.2

name	Chrm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227208 GeneID:12671 MGI:88398
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cholinergic receptor, muscarinic 3, cardiac transcript_id : NM_033269.3

name	Zp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263870 GeneID:664793 MGI:3690088
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : zona pellucida glycoprotein 4 transcript_id : XM_001481274.1

name	Ryr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430577 GeneID:20191 MGI:99685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ryanodine receptor 2, cardiac transcript_id : NM_023868.2

name	Zmynd11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89337272 GeneID:66505 MGI:1913755
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : zinc finger, MYND domain containing 11 protein_id : NP_653099.2

name	Chrm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15149489 CCDS:CCDS26238.1 GeneID:12671 MGI:88398
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0015464 - acetylcholine receptor activity [Evidence TAS]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007213 - acetylcholine receptor signaling, muscarinic pathway [Evidence TAS]; GO:0007586 - digestion [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007207 - muscarinic acetylcholine receptor, phospholipase C activating pathway [Evidence TAS]; GO:0007582 - physiological process [Evidence IMP]; GO:0045987 - positive regulation of smooth muscle contraction [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006939 - smooth muscle contraction [Evidence IMP]; GO:0007271 - synaptic transmission, cholinergic [Evidence TAS] codon_start : 1 note : AChR M3; muscarinic acetylcholine receptor 3 product : cholinergic receptor, muscarinic 3, cardiac protein_id : NP_150372.1

name	Zp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263871 GeneID:664793 MGI:3690088
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : zona pellucida glycoprotein 4 protein_id : XP_001481324.1 transl_except : (pos:11614445..11614447,aa:OTHER) transl_except : (pos:11614478..11614480,aa:OTHER) transl_except : (pos:11615001..11615003,aa:OTHER) transl_except : (pos:11615025..11615027,aa:OTHER) transl_except : (pos:11615987..11615989,aa:OTHER) transl_except : (pos:11618261..11618263,aa:OTHER) transl_except : (pos:11618802..11618804,aa:OTHER) transl_except : (pos:11620619..11620621,aa:OTHER) transl_except : (pos:11620640..11620642,aa:OTHER) transl_except : (pos:11620673..11620675,aa:OTHER) transl_except : (pos:11620682..11620684,aa:OTHER) transl_except : (pos:11620697..11620699,aa:OTHER)

name	Ryr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430578 GeneID:20191 MGI:99685
definition	GO_component : GO:0016021 - integral to membrane [Evidence IC]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005219 - ryanodine-sensitive calcium-release channel activity [Evidence IDA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IEA]; GO:0006816 - calcium ion transport [Evidence IDA]; GO:0006811 - ion transport [Evidence IEA]; GO:0031000 - response to caffeine [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ryanodine receptor type 2; calcium release channel product : ryanodine receptor 2, cardiac protein_id : NP_076357.2

name	LOC100039604 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039604
definition	number : 1 pseudo : _no_value

name	LOC100039648 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039648
definition	number : 1 pseudo : _no_value

name	LOC100039648 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039648
definition	number : 2 pseudo : _no_value

clone name	MSMg01-319O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-320H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254G09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-049L10.T7 (MSMg01no049_l10.b1)	MSMg01-049L10.TJ (MSMg01no049_l10.g1)
ACC	AG279063	AG279064
length	1,272	1,336
length of high quality (start - end)	325 (70 - 394)	283 (122 - 404)
definition	CHROMAT_FILE: MSMg01no049_l10.b1 PHD_FILE: MSMg01no049_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:01 2005	CHROMAT_FILE: MSMg01no049_l10.g1 PHD_FILE: MSMg01no049_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:01 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ATGCGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTTCCCCTA AATATCCCCTTTTCCCCCATTTCATTAACTGTGTTCCCATCCGCTGTGCC CTTTCCTGTAGCCATTATCGTTTCCCACTAACTACTCTTGCTACACATCC ACTCTGAGGTCCTGGAGTCACTTATCCGCAGGGGCCTTTTGTACCTTGCA GCTCTAATCACACCACTCCTGTGTTCTAAAACTTCAATCACTTCTGGGAG CTTTACAGACAAAATCTGGTCACTATCAATTGCTCTGGCAGCATGGTGTG CCATTATCCCCCCATCCCTTTATTCCTGACAGATAGCTCAACTCTCAGCT CCTTGAATAAACCATGCTCCCTCCTGCTGGAGAACTCTTTGATCTAACTA TCCCTTCTCCCCACAGTGCCCTTTCCAGATCTTTTGTCTGTAGAGACAAC TACCACCTCCTCCATTTCTCCAGGTTTGGCTTGAATACCACTGCCTCGGG GATGCCTTTCGGGACCTCTCTAGCTGATGCTTCCAACAGTCCCCACCCCA GTATATCTTCACCTTCCTGCCGGGTGGCCCTTTTGCGTGTGTGTGTTTCC TTCTCTTAATCATAAACACTCCACTCACTTGACGTCCACCCACTTGGTGA GTCCTCTGAGGCTACACACTGCACCTGCTTCGTCCTCCTTGTATTACCTA CTCAAGATAGTCCACTGACGGAAGATACCCTGCGCAATACTTGCTAACAC ATTGAATTAATTCATGTCTAAATGACTTAGGGAATACAACAAGTGTCCAC TCTCCCTTTTCCGCCTAGGAATAATTCTCACGACTTTAATCGTACTTTAA AAAGCAACTTTTCCTCCCCAAACTTAAATCCCTCTTGGGTATTGCATTAC CTTTTTTCCCCTCTTTAGTACACCCTCGGAACCTTATAACATAACCCTTC CTCCTAAACTCCCCTGAGGCAATTAACTAAGTGACCCCAAATTCACTTAT TTCCCTTCAAAATTCTTTGGTCCAAGCTTATCCCGTACTCTCCCCAATAA TTCTCCTTATTCTCTCTTAATCCCATATTATCACATAATATTTCTCCCCT ACTATTCANCTTTTCTCCTCTTTCAATATATTCTTATATCTATAACATAC TTATCCTATCTTTTATCTCATTATGTGTCAATTGCAAAGTCACTATCTCC TATTACTATCATATTTTATATATTTGTGTTCCTATAAACTCTTAAATCTT CTCTAAATATTACCATTGAATT	NNAAAGATTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXCTCTTTTATTACACTGAGTAGCTTTTTAAAAAATAT GGCTACTATAGATTTCCGCGCTCAAGATTATATTACCTGCAAAAAAATAT TTTTTTTTCTTTCCAATTTGGCTAGCATTTATTTCTCTTCCCTGGTGTGT GTGTGGGTGTGTGTGTGTGTATACTTCATTACCATGTTGAATAGTGGTGT TCTTCTCATCTTATTAATTTTTTCAAGAGAAATTCTTTCACTTTTTCTCA GATATTGTGATGATAGCTGTACATCTTTTTGTGGCCTTTATGTGATGGAA CACTTACATACAGATTGTGAATCTTTGTTCTCAGAAAAATGCTGAATTTT ATGATGCAGGGCAGTGGGCATGGGGGAATAAAGCGAGTGGGACAAAATTT TTTTCCCCCCACAGTTCGGTGCAAACATGCATACAAAAGAAAGACTGGTT TCCACATGGCCCTGGGTGGCTGTCTGGTTATGGAAAGCCACTGAACCCTA CCCGCCACTGTATATACAAGGTTCCAGTCCTAGGTCTCTTGCTGCCTCAC TGAAGCCAATGATAACACTTTCCCACTTCTCACATATCTCAAAATGTCGT ATGAATCCTTGAAAAAAATCCATAACAATATTGAATCTCCTCTACAATAT TACTCGCACCATCCTCACGCTCCGAATGTTATCTTAAAACCAAACCATAC AAAAAAACATCTGTTCAAACCCTCTCCTTTCTTCTCTAATCGCATTATTT TTCTATTTCTTTGTCCTCCTTTTATTATAAATATATTATATTCTCTTCTA TTTCATAATTTTAAAAACTATATTTTCTTTTTTTCAATATTTAATCTTCA ATCTACCTTCTTTACATTATCATCATCTCTTATAATCCATTAATAATTAT CCTATTCTCTAACCTCAAATCTCTTCATTTATAATTACTTCAACCTCTTG ATCCTGCATACTCTCTATACTCTATTTAATCTTTATTCCATCTCATCTTT CTACTTTATATCTATATTATTCCTTTATCTACACATTAAAACTCCTCTAT CATTCACTAATTCATTAACACATGTCTACTCATCAAACCGTCCTGTAACA AATCTTCTATCATATATCTTCTACATCATATACTATACATAGTATGTTTC ATTCCCCCCCCCCTTTTATTATATTATAACATTATATATATACCACTATT ACCACACCTATTCTACTTCAGATACTCAGTGCCTACATCTCTCTACATTA TACCTCTTACATACTACCTCAAGCTATACTCCTATC
quality values	Open. Hide. 6 8 6 6 8 15 10 10 13 8 6 6 8 6 8 8 8 8 8 8 8 19 21 33 33 33 33 33 39 39 39 39 39 31 34 40 40 47 47 47 57 57 59 59 48 48 48 32 19 12 10 10 22 22 23 22 15 10 10 10 10 10 10 11 11 20 19 17 17 17 23 23 30 36 36 36 36 38 35 35 29 29 28 34 35 36 35 36 36 33 33 33 31 28 24 22 10 10 10 10 15 20 22 27 36 33 29 21 19 14 10 13 10 10 12 20 26 43 47 57 50 50 50 50 57 50 40 40 40 42 36 36 40 42 42 47 54 54 54 41 41 42 42 41 47 48 48 57 57 57 57 57 57 57 57 57 48 48 48 57 57 57 57 54 54 47 50 50 48 48 47 57 57 57 57 57 57 59 59 59 59 59 59 48 48 57 59 57 57 57 57 57 57 57 57 57 57 57 57 54 57 57 57 57 57 68 57 57 59 54 52 57 52 52 52 52 52 57 57 57 57 57 57 57 57 57 57 57 52 57 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 57 57 57 57 57 57 52 52 57 57 52 52 57 57 57 57 57 57 59 57 57 54 57 57 57 57 57 57 54 54 54 57 57 57 52 52 43 42 35 43 43 52 52 52 43 42 43 42 33 43 36 43 43 50 46 57 57 59 34 32 20 17 17 32 34 47 32 29 14 14 14 28 29 43 57 57 57 57 32 32 16 16 16 32 32 43 43 47 47 43 43 39 39 43 47 47 47 43 48 48 59 59 57 57 57 57 57 46 43 43 43 43 43 54 43 47 43 43 48 59 57 57 57 48 48 48 48 43 43 39 39 39 39 30 24 24 31 31 31 29 19 13 8 8 6 6 8 16 21 23 22 15 20 20 32 34 48 57 57 48 48 48 48 43 34 32 23 23 28 32 32 43 43 37 36 36 36 36 42 57 59 59 59 59 47 43 37 37 37 40 28 28 16 18 9 11 11 10 10 8 8 8 8 10 12 26 21 23 12 13 13 27 25 43 43 26 27 12 13 12 27 26 59 44 37 37 43 39 39 35 35 35 42 42 47 26 21 11 10 10 17 17 44 39 43 43 36 30 22 17 19 24 29 21 21 13 13 13 23 11 11 9 16 16 16 23 16 28 26 36 28 30 24 16 16 16 30 30 41 41 40 39 47 43 19 9 8 11 11 17 10 16 19 15 15 14 24 24 39 32 28 28 28 37 37 39 48 47 40 37 19 13 10 10 12 22 23 26 12 9 9 21 18 23 23 13 17 11 10 11 11 23 23 33 28 16 16 10 10 17 28 23 22 19 16 14 14 14 23 30 35 21 19 15 18 16 18 14 10 9 15 15 10 10 13 25 13 11 8 8 8 8 9 9 22 22 26 17 15 18 15 19 19 15 12 13 10 12 10 9 14 9 16 19 26 25 18 18 17 22 19 26 18 13 14 9 9 9 23 16 18 18 19 24 28 24 19 19 24 28 22 12 11 11 11 17 17 10 10 8 8 8 8 11 15 24 24 23 22 19 10 10 10 8 8 8 8 8 8 12 15 11 11 11 11 11 16 16 25 15 23 24 13 13 11 9 13 10 8 8 8 10 10 15 13 13 12 12 14 17 18 13 10 10 10 10 10 10 16 11 11 18 13 10 8 8 8 8 10 13 11 10 10 10 10 14 19 14 18 11 15 12 8 8 8 10 8 8 12 10 8 8 8 10 10 12 8 8 6 6 8 8 10 9 10 10 10 10 10 10 8 8 8 8 10 8 9 9 9 8 8 13 8 8 8 10 10 9 9 10 10 14 17 12 9 9 8 8 8 8 11 11 11 11 11 10 10 10 13 10 13 10 9 9 12 9 8 8 8 13 10 8 8 8 8 10 6 6 6 6 8 8 13 10 10 10 9 10 13 10 9 8 9 9 9 8 8 8 8 8 10 10 12 14 18 15 16 16 15 15 10 9 14 10 10 10 10 8 8 8 8 10 10 8 8 8 8 8 10 10 11 9 9 9 8 8 8 8 8 9 15 8 10 9 9 8 8 8 8 10 13 10 10 10 10 9 9 9 9 9 9 9 9 8 10 10 11 8 8 8 10 8 8 8 8 8 10 6 6 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 12 12 11 10 6 8 6 6 8 8 10 10 11 11 8 8 8 8 8 8 15 15 12 8 8 8 8 8 8 8 6 6 8 8 6 6 8 8 10 10 12 21 16 15 8 8 8 12 6 6 8 8 8 8 6 6 8 8 10 9 9 9 9 9 10 11 11 11 10 8 8 8 8 8 10 8 9 10 10 10 10 10 8 8 6 6 8 8 13 8 6 6 8 8 8 9 9 8 8 8 8 8 10 9 10 8 8 8 8 9 9 8 8 8 8 8 8 9 9 9 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 10 10 10 8 9 9 9 9 10 3 0 3 8 8 8 8 8 8 8 6 6 6 6 6 8 8 8 8 8 8 6 8 8 11 11 9 9 8 8 8 8 7 6 8 6 6 8 8 6 6 8 8 10 11 11 8 8 6 6 8 10 7 9 12 10 10 10 10 10 8 6 6 8 8 10 10 11 10 8 10 6 6 8 10 7 8 8 8 8 8 8 8 8 10 11 11 9 10 10 10 10 8 8 6 6 8 8 8 10 8 8 8 6 6 8 8 10 11 8 10 6 6 8 8 8 8 7 7 8 9 8 6 7 6 6 8 10 9 9 10 10 8 8 8 7 7 8 10 10 8 8 8 8 10 10 10 8 8 6 6 6 11 8 8 8 8 8 8 8 7 8 8 8 7	Open. Hide. 0 0 3 6 6 6 6 6 7 7 9 9 6 13 8 6 6 7 6 11 10 11 8 7 8 3 0 3 13 14 13 10 10 10 19 19 26 11 16 19 21 17 10 9 11 23 19 28 28 24 31 39 39 48 48 48 48 48 48 37 23 18 11 11 11 12 12 12 15 21 23 34 17 14 9 9 10 17 22 30 28 28 28 28 28 36 47 57 23 24 12 10 10 24 29 57 53 50 44 44 26 21 11 10 10 10 9 9 9 11 9 9 9 15 19 29 12 10 9 9 9 13 18 34 37 46 37 37 37 37 47 47 48 53 42 42 42 43 39 39 47 47 43 43 48 57 57 50 50 54 54 68 68 68 68 59 57 57 57 57 54 41 48 41 41 41 41 48 46 42 37 35 35 36 23 21 11 12 12 15 14 26 32 44 57 57 47 47 46 47 47 32 24 24 19 40 36 40 40 37 37 33 32 21 21 14 15 15 26 26 37 43 43 43 43 43 38 43 43 57 57 57 57 57 57 57 54 57 54 57 57 57 54 52 57 52 57 52 50 50 43 43 33 43 38 38 29 29 27 43 43 43 57 52 45 45 52 52 52 57 52 52 52 52 52 52 57 57 57 57 57 57 57 52 57 52 52 52 52 52 57 57 57 57 57 57 57 57 57 52 52 57 57 57 59 59 57 38 36 20 20 27 41 43 57 57 43 57 52 47 44 52 43 43 39 23 21 21 13 13 15 24 32 43 43 52 57 57 57 52 43 42 43 35 35 35 43 43 52 43 47 43 35 35 32 36 20 23 32 43 43 52 43 43 43 43 31 27 32 30 30 14 24 21 43 43 24 24 28 23 24 11 11 12 28 32 43 43 43 43 30 30 14 14 14 15 15 19 32 32 39 37 27 23 14 19 19 36 36 43 32 23 12 11 11 22 23 24 24 17 13 12 10 10 13 15 15 14 14 28 28 24 13 13 13 18 15 30 29 39 26 15 10 9 9 10 9 9 9 12 12 13 25 22 18 12 12 10 13 15 13 19 15 21 22 28 25 18 13 12 11 11 11 16 21 32 32 23 22 22 17 17 11 10 10 10 10 10 8 6 6 6 8 10 10 10 8 8 8 8 8 8 8 8 11 10 8 8 8 15 15 13 13 8 8 10 10 10 12 18 24 28 28 15 13 10 8 8 8 8 8 8 9 10 19 13 13 15 12 15 12 8 8 8 8 8 10 8 8 11 8 8 8 10 10 13 8 12 8 8 8 12 16 20 20 20 20 16 16 8 8 6 6 10 8 8 8 8 8 8 8 8 8 8 13 11 11 8 8 6 6 8 8 10 10 9 9 12 14 11 10 9 9 9 9 8 12 9 9 12 10 8 8 8 8 8 10 11 11 11 11 12 20 16 12 13 13 13 12 12 10 10 8 8 6 8 8 6 8 8 10 10 14 15 19 12 10 7 6 6 6 9 10 11 11 9 9 8 8 8 8 8 8 8 10 9 9 8 8 8 8 8 8 8 8 8 12 7 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 10 9 9 9 8 8 10 13 10 12 7 7 8 6 9 9 10 10 11 10 10 9 9 9 9 10 13 9 8 8 10 8 8 9 9 8 8 8 8 8 10 8 8 8 8 7 6 8 8 9 9 10 10 11 10 8 8 6 7 8 8 8 8 8 11 11 10 10 10 8 8 6 6 8 8 8 8 8 8 6 6 8 6 6 8 8 8 8 6 6 7 7 10 8 9 8 8 7 6 8 8 10 10 11 8 8 8 8 8 8 9 9 12 12 15 10 8 8 6 6 8 8 8 10 10 8 8 6 6 8 8 10 10 8 8 8 6 6 8 8 8 8 8 8 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 10 11 11 8 10 6 6 8 8 8 8 8 8 8 10 15 13 10 10 9 8 8 8 8 8 10 6 6 8 8 10 6 6 6 6 8 8 8 8 8 8 8 8 6 7 6 6 8 8 8 8 10 11 11 11 11 9 9 9 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 10 8 8 6 6 6 6 8 8 8 8 6 6 8 8 9 10 16 13 10 10 8 8 8 8 8 8 10 13 10 10 10 8 8 6 6 8 8 6 6 8 8 8 8 6 6 8 6 6 8 8 9 9 9 9 9 9 9 9 6 6 8 8 8 8 9 9 8 8 8 8 8 8 8 8 8 8 8 6 7 8 8 8 8 8 11 8 8 9 9 8 8 10 10 11 11 11 12 11 8 8 6 6 6 6 10 12 10 8 8 8 10 10 11 6 9 9 7 10 10 10 8 10 10 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 9 8 8 8 6 6 8 8 9 8 8 8 8 8 8 8 8 8 8 14 8 8 8 8 8 8 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 8 9 8 8 6 6 8 6 6 8 8 11 12 10 9 9 9 9 9 12 12 10 8 9 9 14 10 10 8 10 8 8 8 10 13 21 10 10 10 10 10 8 8 8 8 8 8 9 9 9 8 8 13 8 8 8 8 8 8 8 13 10 9 8 8 8 12 12 24 21 19 15 9 8 8 6 6 8 8 10 15 10 12 10 10 9 6 6 6 6 8 8 8 8 8 8 8 8 8 7 6 8 8 8 8 8 8 8 8 11 10 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 6 6 8 8 8 8 10 8 7 7 9 9 9 9 10 10 8 8 6 6 8 8 8 8 6 6 8 8 8 8 8 6 6 8 8 10 9 9 12 10 8 8 8 8 8 8 8 8 8 6 6 8 6 7 8 8 8 9 9 10 10 8 8 8 13 15 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no049_l10.b1 MSMg01no049_l10.b1 CHROMAT_FILE:
MSMg01no049_l10.b1 PHD_FILE: MSMg01no049_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:01 2005
         (325 letters)



>mm_chr13_10690457_10691180
          Length = 724

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%), Gaps = 1/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcattaactgtgttcccatccgctgtgccctttcctgtagccattatcgtttcccact 60
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 522 tttcattaactgtgttcccatccgctgtggactttcctgtagccattatcgtttcccact 463

                                                                       
Query: 61  aactactcttgctacacatccactctgaggtcctggagtcacttatccgcaggggccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aactactcttgctacacatccactctgaggtcctggagtcacttatccgcaggggccttt 403

                                                                       
Query: 121 tgtaccttgcagctctaatcacaccactcctgtgttctaaaacttcaatcacttctggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgtaccttgcagctctaatcacaccactcctgtgttctaaaacttcaatcacttctggga 343

                                                                       
Query: 181 gctttacagacaaaatctggtcactatcaattgctctggcagcatggtgtgccattatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gctttacagacaaaatctggtcactatcaattgctctggcagcatggtgtgccattatcc 283

                                                                       
Query: 241 ccccatccctttattcctgacagatagctcaactctcagctccttgaataaaccatgctc 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctccatccctttattcctgacagatagctcaactctcagctccttgaataaaccatgctc 223

                                  
Query: 301 cctcctgctggagaactctttga 323
           ||||||||||||||||| |||||
Sbjct: 222 cctcctgctggagaact-tttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 724
Length adjustment: 9
Effective length of query: 316
Effective length of database: 715
Effective search space:   225940
Effective search space used:   225940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information