Query= MSMg01no050_a22.b1 MSMg01no050_a22.b1 CHROMAT_FILE:
MSMg01no050_a22.b1 PHD_FILE: MSMg01no050_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:51 2005
(821 letters)
>mm_chr13_16397470_16398689
Length = 1220
Score = 1520 bits (786), Expect = 0.0
Identities = 801/806 (99%), Gaps = 1/806 (0%)
Strand = Plus / Plus
Query: 15 gaattctacattaaccatttgagcggtaacaggggaagataagtgtttttcatttatttc 74
||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct: 215 gaattctacattaaccatttgagtgggaacaggggaagatgagtgtttttcatttatttc 274
Query: 75 tcaagtgcattcatgcctatctcctgctttgtccaactgagctagagtcagtagatcatt 134
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcaagtgcattcatgcctatttcctgctttgtccaactgagctagagtcagtagatcatt 334
Query: 135 actaccccatgtgctgttaacacctcatgaccagtgcatgggcctcacagactctctttg 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 actaccccatgtgctgttaacacctcatgaccagtgcatgggcctcacagactctctttg 394
Query: 195 catttgacctttctaaaagcatgcttatagacctatctattatgtccagagcatactaaa 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 catttgacctttctaaaagcatgcttatagacctatctattatgtccagagcatactaaa 454
Query: 255 tgatgtctctttgtagagcatgtacctggctgaaaactgctcacaaggacttttagctga 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgatgtctctttgtagagcatgtacctggctgaaaactgctcacaaggacttttagctga 514
Query: 315 attttaatgttgcataccttggctagctctaagtagcataccacacagaaggagattaag 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 attttaatgttgcataccttggctagctctaagtagcataccacacagaaggagattaag 574
Query: 375 aatgagggcaaccattatgcccaagtctagaaaaaacacagaaaacatatatgtttgatg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aatgagggcaaccattatgcccaagtctagaaaaaacacagaaaacatatatgtttgatg 634
Query: 435 ctttactcctcaaaccatcagctctataatctctcccttcaaaacatctgaaactcattt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctttactcctcaaaccatcagctctataatctctcccttcaaaacatctgaaactcattt 694
Query: 495 tgatgtttgtctacttggtggtaaccctagcctaatttttttttaacctactttagccac 554
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 695 tgatgtttgtctacttggtggtaaccctagcctaatttttttt-aacctactttagccac 753
Query: 555 tgctagctactatactaaaacatcacattctagaggcacaggacttttgttttccacagt 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgctagctactatactaaaacatcacattctagaggcacaggacttttgttttccacagt 813
Query: 615 tatctcaaaccatagattgtgtggttaaggtctgctgataccctcttctctaatgaccat 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tatctcaaaccatagattgtgtggttaaggtctgctgataccctcttctctaatgaccat 873
Query: 675 tatgagagcagtctgttttcatagtttaaccattctcagaatggctgtctcatagcatac 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tatgagagcagtctgttttcatagtttaaccattctcagaatggctgtctcatagcatac 933
Query: 735 tcatatgggaagtcgggaatttgaaaaacaaacttatggggaagatgtatgcaagcatcc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 tcatatgggaagtcgggaatttgaaaaacaaacttatggggaagatgtatgcaagcatcc 993
Query: 795 agtccaacatactgccatcatcactc 820
||||||||||||||||||||||||||
Sbjct: 994 agtccaacatactgccatcatcactc 1019
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 821
Length of database: 1220
Length adjustment: 10
Effective length of query: 811
Effective length of database: 1210
Effective search space: 981310
Effective search space used: 981310
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no050_a22.g1 MSMg01no050_a22.g1 CHROMAT_FILE:
MSMg01no050_a22.g1 PHD_FILE: MSMg01no050_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:51 2005
(720 letters)
>mm_chr13_16420441_16421560
Length = 1120
Score = 1292 bits (668), Expect = 0.0
Identities = 707/720 (98%), Gaps = 1/720 (0%)
Strand = Plus / Minus
Query: 1 attgaacttctgctttgtttatgtgttgtggggatttgacgtacagaagctgcccaccca 60
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 857 attgaacttctgctttgtttatgtgttgtggggatttgagggacagaagctgcccaccca 798
Query: 61 acttaaatgggtttgaatcttgggaaagcaaaacaatggctgagtgtttgactatacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 acttaaatgggtttgaatcttgggaaagcaaaacaatggctgagtgtttgactatacaga 738
Query: 121 tgggatgctgaggatgtgagctggggttcaagtacggtccacagtttgtagctcttcatg 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 737 tgggatgctgaggatgtgagctggggttcaagtacggtccacagtttggagctcttcatg 678
Query: 181 cctgcatgggagacctcagttaccttcgtgaaacttggaaccatacctctcagctcagga 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cctgcatgggagaccacagttaccttcgtgaaacttggaaccatacctctcagctcagga 618
Query: 241 atgctgtgggatggaccacctctttctgctgtgatgtctcatcattttgttatcactcat 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 attttgtgggatggaccacctctttctgctgtgatgtctcatcattttgttatcactcat 558
Query: 301 cacaccataagaggctttgctctcctgtccagcccttttgtgtgggaacaaactgaagtt 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cacgccataagaggctttgctctcctgtccagcccttttgtgtgggaacaaactgaagtt 498
Query: 361 tgacagatttccatgtagtggaacatggcccaatatcaaaagtgtaccccactcatcata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgacagatttccatgtagtggaacatggcccaatatcaaaagtgtaccccactcatcata 438
Query: 421 cctcttccctcttgaatagctcacatgcactctggcaatactttctgtcttcaaaacata 480
| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 437 cttcttccctcttgaatagctcacatgcactctggcaataatctctgtcttcaaaacata 378
Query: 481 tagaacctgctcatgttgctccttcaatcaagccactgcttactccatggctctagttcc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 377 tagaacctgctcatgttgctccttcaatcaagccactgcttactccatggctctagtttc 318
Query: 541 ctataccaccaccaccatcagctattttccacctgtttctttgctcactctccaattctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctataccaccaccaccatcagctattttccacctgtttctttgctcactctccaattctc 258
Query: 601 caatcataattcccacaatcctcccctttaccagatctcccttgagcttagagaggtttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caatcataattcccacaatcctcccctttaccagatctcccttgagcttagagaggtttt 198
Query: 661 ggttggtggtttggttggtttgcttgcttgcttgttttgttttttggtttgttgttgttg 720
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 197 ggttggtgg-ttggttggtttgcttgcttgcttgttttgttttttggttttttgttgttg 139
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space: 788100
Effective search space used: 788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
